Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:29:58 (2627039): wrapper (7.7.26015): starting
00:29:58 (2627039): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:29:58] Arguments: --nthreads 8
[2025-11-27 00:29:58] Threads: 8
[2025-11-27 00:29:58] Checking for CVMFS
[2025-11-27 00:29:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:29:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:29:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:29:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:29:58] 2.10.1.0 4440 252893 170292 153349 2 81 10875001 18432001 3769 130560 2 281503074 99.988 10227482 6506 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 00:29:58] CVMFS is ok
[2025-11-27 00:29:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:29:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:29:58] Further information can be found at the LHC@home message board.
[2025-11-27 00:29:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:29:58] Checking for apptainer binary...
[2025-11-27 00:29:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:29:58] Running /usr/bin/apptainer --version
[2025-11-27 00:29:58] apptainer version 1.1.9-1.el8
[2025-11-27 00:29:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:29:59] c-16-31.aglt2.org
[2025-11-27 00:29:59] apptainer works
[2025-11-27 00:29:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:29:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:29:59] Starting ATLAS job with PandaID=6897487110
[2025-11-27 00:29:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:45:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:45:01] 2025-11-27 22:44:16,866 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:45:01] 2025-11-27 22:44:16,867 | INFO     | job 6897487110 has state=finished
[2025-11-27 17:45:01] 2025-11-27 22:44:16,867 | INFO     | preparing for final server update for job 6897487110 in state='finished'
[2025-11-27 17:45:01] 2025-11-27 22:44:16,868 | INFO     | this job has now completed (state=finished)
[2025-11-27 17:45:01] 2025-11-27 22:44:16,868 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 17:45:01] 2025-11-27 22:44:16,868 | INFO     | log transfer has been attempted: DONE
[2025-11-27 17:45:01] 2025-11-27 22:44:16,869 | INFO     | job 6897487110 has finished - writing final server update
[2025-11-27 17:45:01] 2025-11-27 22:44:16,869 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 17:45:01] 2025-11-27 22:44:16,870 | INFO     | executing command: lscpu
[2025-11-27 17:45:01] 2025-11-27 22:44:16,933 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:45:01] 2025-11-27 22:44:17,011 | INFO     | PID=2634339 has CPU usage=19.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 17:45:01] 2025-11-27 22:44:17,011 | INFO     | .. there are 5 such processes running
[2025-11-27 17:45:01] 2025-11-27 22:44:18,012 | INFO     | time since job start (62048s) is within the limit (172800.0s)
[2025-11-27 17:45:01] 2025-11-27 22:44:19,173 | INFO     | monitor loop #4403: job 0:6897487110 is in state 'finished'
[2025-11-27 17:45:01] 2025-11-27 22:44:19,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:45:01] 2025-11-27 22:44:20,018 | INFO     | time since job start (62050s) is within the limit (172800.0s)
[2025-11-27 17:45:01] 2025-11-27 22:44:20,897 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 17:45:01] 2025-11-27 22:44:20,907 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2959.8615999999997
[2025-11-27 17:45:01] 2025-11-27 22:44:20,915 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897487110/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:45:01] 2025-11-27 22:44:20,916 | INFO     | extracted standard info from prmon json
[2025-11-27 17:45:01] 2025-11-27 22:44:20,916 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:45:01] 2025-11-27 22:44:20,916 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:45:01] 2025-11-27 22:44:20,944 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:45:01] 2025-11-27 22:44:20,945 | INFO     | sum of square deviations: 326168385618.3185
[2025-11-27 17:45:01] 2025-11-27 22:44:20,976 | INFO     | sum of deviations: 10861444559785.61
[2025-11-27 17:45:01] 2025-11-27 22:44:20,977 | INFO     | mean x: 1764252423.0678465
[2025-11-27 17:45:01] 2025-11-27 22:44:20,977 | INFO     | mean y: 3281240.4837758113
[2025-11-27 17:45:01] 2025-11-27 22:44:20,977 | INFO     | intersect: -58746526305.37249
[2025-11-27 17:45:01] 2025-11-27 22:44:20,979 | INFO     | chi2: 21.886840183603262
[2025-11-27 17:45:01] 2025-11-27 22:44:20,980 | INFO     | sum of square deviations: 321381284348.29517
[2025-11-27 17:45:01] 2025-11-27 22:44:21,012 | INFO     | sum of deviations: 11223226155079.092
[2025-11-27 17:45:01] 2025-11-27 22:44:21,012 | INFO     | mean x: 1764252270.5681818
[2025-11-27 17:45:01] 2025-11-27 22:44:21,013 | INFO     | mean y: 3292761.984189723
[2025-11-27 17:45:01] 2025-11-27 22:44:21,013 | INFO     | intersect: -61607644749.04928
[2025-11-27 17:45:01] 2025-11-27 22:44:21,014 | INFO     | chi2: 19.123075182947943
[2025-11-27 17:45:01] 2025-11-27 22:44:21,014 | INFO     | current chi2=19.123075182947943 (change=12.627519447625977 %)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,014 | INFO     | right removable region: 1011
[2025-11-27 17:45:01] 2025-11-27 22:44:21,016 | INFO     | sum of square deviations: 321381242258.2953
[2025-11-27 17:45:01] 2025-11-27 22:44:21,047 | INFO     | sum of deviations: 10532237063739.932
[2025-11-27 17:45:01] 2025-11-27 22:44:21,047 | INFO     | mean x: 1764252575.5681818
[2025-11-27 17:45:01] 2025-11-27 22:44:21,048 | INFO     | mean y: 3291716.5444664033
[2025-11-27 17:45:01] 2025-11-27 22:44:21,048 | INFO     | intersect: -57814414866.541664
[2025-11-27 17:45:01] 2025-11-27 22:44:21,049 | INFO     | chi2: 19.76758920779499
[2025-11-27 17:45:01] 2025-11-27 22:44:21,049 | INFO     | current chi2=19.76758920779499 (change=9.682763514652645 %)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,050 | INFO     | left removable region: 10
[2025-11-27 17:45:01] 2025-11-27 22:44:21,051 | INFO     | sum of square deviations: 311014938614.24396
[2025-11-27 17:45:01] 2025-11-27 22:44:21,082 | INFO     | sum of deviations: 10806997425207.248
[2025-11-27 17:45:01] 2025-11-27 22:44:21,082 | INFO     | mean x: 1764252545.068931
[2025-11-27 17:45:01] 2025-11-27 22:44:21,082 | INFO     | mean y: 3308400.2427572426
[2025-11-27 17:45:01] 2025-11-27 22:44:21,082 | INFO     | intersect: -61300090069.70479
[2025-11-27 17:45:01] 2025-11-27 22:44:21,084 | INFO     | chi2: 16.766757976037237
[2025-11-27 17:45:01] 2025-11-27 22:44:21,084 | INFO     | current memory leak: 34.75 B/s (using 1001 data points, chi2=16.77)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,085 | INFO     | could have reported an average CPU frequency of 2907 MHz (37 samples)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,085 | INFO     | ..............................
[2025-11-27 17:45:01] 2025-11-27 22:44:21,086 | INFO     | . Timing measurements:
[2025-11-27 17:45:01] 2025-11-27 22:44:21,086 | INFO     | . get job = 0 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,086 | INFO     | . initial setup = 2 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,086 | INFO     | . payload setup = 5 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,086 | INFO     | . stage-in = 0 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,086 | INFO     | . payload execution = 62013 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,087 | INFO     | . stage-out = 3 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,087 | INFO     | . log creation = 0 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,087 | INFO     | ..............................
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | 
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | job summary report
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | --------------------------------------------------
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | PanDA job id: 6897487110
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | task id: 47556161
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | errors: (none)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,236 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | pilot state: finished 
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | transexitcode: 0
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | exeerrorcode: 0
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | exeerrordiag: 
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | exitcode: 0
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | exitmsg: OK
[2025-11-27 17:45:01] 2025-11-27 22:44:21,237 | INFO     | cpuconsumptiontime: 484681 s
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | nevents: 1000
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | neventsw: 0
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | pid: 2652247
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | pgrp: 2652247
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | corecount: 8
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | event service: False
[2025-11-27 17:45:01] 2025-11-27 22:44:21,238 | INFO     | sizes: {0: 2284094, 1: 2284293, 2: 2284293, 4: 2284583, 12: 2284611, 62023: 2337537, 62026: 2346531, 62030: 2346615, 62036: 2346861}
[2025-11-27 17:45:01] 2025-11-27 22:44:21,239 | INFO     | --------------------------------------------------
[2025-11-27 17:45:01] 2025-11-27 22:44:21,239 | INFO     | 
[2025-11-27 17:45:01] 2025-11-27 22:44:21,239 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 17:45:01] 2025-11-27 22:44:21,260 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,260 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,260 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,260 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,260 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,263 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:45:01] 2025-11-27 22:44:21,263 | INFO     | job 6897487110 has completed (purged errors)
[2025-11-27 17:45:01] 2025-11-27 22:44:21,263 | INFO     | overall cleanup function is called
[2025-11-27 17:45:01] 2025-11-27 22:44:22,282 | INFO     | --- collectZombieJob: --- 10, [2652247]
[2025-11-27 17:45:01] 2025-11-27 22:44:22,282 | INFO     | zombie collector waiting for pid 2652247
[2025-11-27 17:45:01] 2025-11-27 22:44:22,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:45:01] 2025-11-27 22:44:22,283 | INFO     | collected zombie processes
[2025-11-27 17:45:01] 2025-11-27 22:44:22,283 | INFO     | will attempt to kill all subprocesses of pid=2652247
[2025-11-27 17:45:01] 2025-11-27 22:44:22,596 | INFO     | process IDs to be killed: [2652247] (in reverse order)
[2025-11-27 17:45:01] 2025-11-27 22:44:22,697 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:45:01] 2025-11-27 22:44:22,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:45:01] 2025-11-27 22:44:22,716 | INFO     | did not find any defunct processes belonging to 2652247
[2025-11-27 17:45:01] 2025-11-27 22:44:22,729 | INFO     | did not find any defunct processes belonging to 2652247
[2025-11-27 17:45:01] 2025-11-27 22:44:22,731 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:45:01] 2025-11-27 22:44:22,731 | INFO     | ready for new job
[2025-11-27 17:45:01] 2025-11-27 22:44:22,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:45:01] 2025-11-27 22:44:22,737 | INFO     | ***************************************
[2025-11-27 17:45:01] 2025-11-27 22:44:22,737 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:45:01] 2025-11-27 22:44:22,737 | INFO     | ***************************************
[2025-11-27 17:45:01] 2025-11-27 22:44:22,737 | INFO     | 
[2025-11-27 17:45:01] 2025-11-27 22:44:22,751 | INFO     | architecture information:
[2025-11-27 17:45:01] 2025-11-27 22:44:22,751 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:45:01] 2025-11-27 22:44:22,769 | INFO     | cat /etc/os-release:
[2025-11-27 17:45:01] NAME="CentOS Linux"
[2025-11-27 17:45:01] VERSION="7 (Core)"
[2025-11-27 17:45:01] ID="centos"
[2025-11-27 17:45:01] ID_LIKE="rhel fedora"
[2025-11-27 17:45:01] VERSION_ID="7"
[2025-11-27 17:45:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:45:01] ANSI_COLOR="0;31"
[2025-11-27 17:45:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:45:01] HOME_URL="https://www.centos.org/"
[2025-11-27 17:45:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:45:01] 
[2025-11-27 17:45:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:45:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:45:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:45:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:45:01] 
[2025-11-27 17:45:01] 2025-11-27 22:44:22,769 | INFO     | ***************************************
[2025-11-27 17:45:01] 2025-11-27 22:44:23,274 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 17:45:01] 2025-11-27 22:44:23,290 | INFO     | sufficient remaining disk space (99784589312 B)
[2025-11-27 17:45:01] 2025-11-27 22:44:23,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:45:01] 2025-11-27 22:44:23,291 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:45:01] 2025-11-27 22:44:23,291 | INFO     | update_server=False
[2025-11-27 17:45:01] 2025-11-27 22:44:23,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:45:01] 2025-11-27 22:44:23,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:45:01] 2025-11-27 22:44:23,292 | INFO     | aborting loop
[2025-11-27 17:45:01] 2025-11-27 22:44:24,216 | INFO     | all payload control threads have been joined
[2025-11-27 17:45:01] 2025-11-27 22:44:24,296 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:24,297 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:24,328 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:24,335 | INFO     | all data control threads have been joined
[2025-11-27 17:45:01] 2025-11-27 22:44:24,348 | INFO     | [job] validate thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:24,416 | INFO     | all job control threads have been joined
[2025-11-27 17:45:01] 2025-11-27 22:44:24,657 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:45:01] 2025-11-27 22:44:24,955 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,223 | INFO     | [payload] control thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,261 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,293 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,340 | INFO     | [data] control thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,421 | INFO     | [job] control thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,443 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:25,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:45:01] 2025-11-27 22:44:25,682 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:26,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:45:01] 2025-11-27 22:44:26,662 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:27,253 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:29,508 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:34,043 | INFO     | job.realtimelogging is not enabled
[2025-11-27 17:45:01] 2025-11-27 22:44:35,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:45:01] 2025-11-27 22:44:53,490 | INFO     | PID=2634339 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:45:01] 2025-11-27 22:44:53,490 | INFO     | .. there are 5 such processes running
[2025-11-27 17:45:01] 2025-11-27 22:44:53,491 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:45:01] 2025-11-27 22:44:53,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:45:01] 2025-11-27 22:44:53,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:45:01] 2025-11-27 22:44:54,986 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:45:01] 2025-11-27 22:44:55,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340664866624)>', '<ExcThread(monitor, started 140340002551552)>']
[2025-11-27 17:45:01] 2025-11-27 22:44:56,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:45:01] 2025-11-27 22:44:56,507 | INFO     | [monitor] control thread has ended
[2025-11-27 17:45:01] 2025-11-27 22:45:00,896 | INFO     | all workflow threads have been joined
[2025-11-27 17:45:01] 2025-11-27 22:45:00,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:45:01] 2025-11-27 22:45:00,897 | INFO     | traces error code: 0
[2025-11-27 17:45:01] 2025-11-27 22:45:00,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:45:01] 2025-11-27 22:45:01,026 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:45:01] 2025-11-27 22:45:01,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:45:01] 2025-11-27 22:45:01,031 [wrapper] pilotpid: 2634339
[2025-11-27 17:45:01] 2025-11-27 22:45:01,034 [wrapper] Pilot exit status: 0
[2025-11-27 17:45:01] 2025-11-27 22:45:01,044 [wrapper] pandaids: 6897487110
[2025-11-27 17:45:01] 2025-11-27 22:45:01,105 [wrapper] cleanup supervisor_pilot 3263929 2634340
[2025-11-27 17:45:01] 2025-11-27 22:45:01,108 [wrapper] Test setup, not cleaning
[2025-11-27 17:45:01] 2025-11-27 22:45:01,112 [wrapper] apfmon messages muted
[2025-11-27 17:45:01] 2025-11-27 22:45:01,114 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:45:01] 2025-11-27 22:45:01,117 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:45:01]  *** Error codes and diagnostics ***
[2025-11-27 17:45:01]     "exeErrorCode": 0,
[2025-11-27 17:45:01]     "exeErrorDiag": "",
[2025-11-27 17:45:01]     "pilotErrorCode": 0,
[2025-11-27 17:45:01]     "pilotErrorDiag": "",
[2025-11-27 17:45:01]  *** Listing of results directory ***
[2025-11-27 17:45:01] total 1328264
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 17:45:01] -rwx------ 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas       100 Nov 27 00:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:45:01] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 00:29 run_atlas
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas       105 Nov 27 00:29 job.xml
[2025-11-27 17:45:01] -rw-r--r-- 2 boincer umatlas 410537816 Nov 27 00:29 EVNT.47483658._002245.pool.root.1
[2025-11-27 17:45:01] -rw-r--r-- 2 boincer umatlas    590108 Nov 27 00:29 input.tar.gz
[2025-11-27 17:45:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:29 start_atlas.sh
[2025-11-27 17:45:01] drwxrwx--x 2 boincer umatlas      4096 Nov 27 00:29 shared
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas         0 Nov 27 00:29 boinc_lockfile
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 00:29 pandaJob.out
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas        57 Nov 27 00:29 setup.sh.local
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas    991578 Nov 27 00:30 agis_schedconf.cvmfs.json
[2025-11-27 17:45:01] drwx------ 5 boincer umatlas      4096 Nov 27 00:30 pilot3
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas       533 Nov 27 17:35 boinc_task_state.xml
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas      6014 Nov 27 17:40 init_data.xml
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas 924137048 Nov 27 17:43 HITS.47556161._002289.pool.root.1
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas      1065 Nov 27 17:44 memory_monitor_summary.json
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas   1516240 Nov 27 17:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas   2212289 Nov 27 17:44 log.47556161._002289.job.log.tgz.1
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas      8643 Nov 27 17:44 heartbeat.json
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas        95 Nov 27 17:44 pilot_heartbeat.json
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas      4895 Nov 27 17:45 pilotlog.txt
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas   8560469 Nov 27 17:45 log.47556161._002289.job.log.1
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas       353 Nov 27 17:45 output.list
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas       620 Nov 27 17:45 runtime_log
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas  10792960 Nov 27 17:45 result.tar.gz
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas       665 Nov 27 17:45 sSCLDmGXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBbJKDmoF9WWm.diag
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 17:45 runtime_log.err
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas        29 Nov 27 17:45 wrapper_checkpoint.txt
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 17:45 boinc_mmap_file
[2025-11-27 17:45:01] -rw-r--r-- 1 boincer umatlas     21874 Nov 27 17:45 stderr.txt
[2025-11-27 17:45:01] HITS file was successfully produced:
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas 924137048 Nov 27 17:43 shared/HITS.pool.root.1
[2025-11-27 17:45:01]  *** Contents of shared directory: ***
[2025-11-27 17:45:01] total 1314540
[2025-11-27 17:45:01] -rw-r--r-- 2 boincer umatlas 410537816 Nov 27 00:29 ATLAS.root_0
[2025-11-27 17:45:01] -rw-r--r-- 2 boincer umatlas    590108 Nov 27 00:29 input.tar.gz
[2025-11-27 17:45:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:29 start_atlas.sh
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas 924137048 Nov 27 17:43 HITS.pool.root.1
[2025-11-27 17:45:01] -rw------- 1 boincer umatlas  10792960 Nov 27 17:45 result.tar.gz
17:45:03 (2627039): run_atlas exited; CPU time 486206.319144
17:45:03 (2627039): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN