Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:36 (3942739): wrapper (7.7.26015): starting
00:12:36 (3942739): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:12:36] Arguments: --nthreads 8
[2025-11-27 00:12:36] Threads: 8
[2025-11-27 00:12:36] Checking for CVMFS
[2025-11-27 00:12:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:12:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:12:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:12:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:12:39] 2.13.2.0 3557600 23852 233796 153347 0 827 38936259 40960000 42888 16776704 0 237093710 99.665 211966755 48527 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:12:39] CVMFS is ok
[2025-11-27 00:12:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:12:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:12:39] Further information can be found at the LHC@home message board.
[2025-11-27 00:12:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:12:39] Checking for apptainer binary...
[2025-11-27 00:12:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:12:39] Running /usr/bin/apptainer --version
[2025-11-27 00:12:39] apptainer version 1.4.4-1.el9
[2025-11-27 00:12:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:12:40] c-208-40.aglt2.org
[2025-11-27 00:12:40] apptainer works
[2025-11-27 00:12:40] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:12:40] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:12:40] Starting ATLAS job with PandaID=6898177498
[2025-11-27 00:12:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:06 (3942739): BOINC client no longer exists - exiting
00:20:06 (3942739): timer handler: client dead, exiting
00:21:34 (4056466): wrapper (7.7.26015): starting
00:21:34 (4056466): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:21:34] Arguments: --nthreads 8
[2025-11-27 00:21:34] Threads: 8
[2025-11-27 00:21:34] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:21:34] Checking for CVMFS
[2025-11-27 00:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:21:35] 2.13.2.0 3557600 23861 215404 153349 3 180 39029553 40960001 32191 16776704 0 237371418 99.664 211986254 48517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:21:35] CVMFS is ok
[2025-11-27 00:21:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:21:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:21:35] Further information can be found at the LHC@home message board.
[2025-11-27 00:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:21:35] Checking for apptainer binary...
[2025-11-27 00:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:21:35] Running /usr/bin/apptainer --version
[2025-11-27 00:21:35] apptainer version 1.4.4-1.el9
[2025-11-27 00:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:21:35] c-208-40.aglt2.org
[2025-11-27 00:21:35] apptainer works
[2025-11-27 00:21:35] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:21:35] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:21:35] Starting ATLAS job with PandaID=6898177498
[2025-11-27 00:21:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:47:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:47:44] 2025-11-27 13:38:36,287 | INFO     | time since job start (29809s) is within the limit (172800.0s)
[2025-11-27 20:47:44] 2025-11-27 13:38:36,761 | INFO     | monitor loop #1785: job 0:6898177498 is in state 'finished'
[2025-11-27 20:47:44] 2025-11-27 13:38:36,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,094 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:47:44] 2025-11-27 13:38:37,099 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9875
[2025-11-27 20:47:44] 2025-11-27 13:38:37,112 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898177498/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,112 | INFO     | extracted standard info from prmon json
[2025-11-27 20:47:44] 2025-11-27 13:38:37,112 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:47:44] 2025-11-27 13:38:37,112 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:47:44] 2025-11-27 13:38:37,117 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:47:44] 2025-11-27 13:38:37,118 | INFO     | sum of square deviations: 36037732620.393425
[2025-11-27 20:47:44] 2025-11-27 13:38:37,121 | INFO     | sum of deviations: 400832396991.4595
[2025-11-27 20:47:44] 2025-11-27 13:38:37,121 | INFO     | mean x: 1764235793.557377
[2025-11-27 20:47:44] 2025-11-27 13:38:37,121 | INFO     | mean y: 2886010.3586065574
[2025-11-27 20:47:44] 2025-11-27 13:38:37,121 | INFO     | intersect: -19619959562.050022
[2025-11-27 20:47:44] 2025-11-27 13:38:37,121 | INFO     | chi2: 3.9841151273556075
[2025-11-27 20:47:44] 2025-11-27 13:38:37,121 | INFO     | sum of square deviations: 34941534554.74534
[2025-11-27 20:47:44] 2025-11-27 13:38:37,124 | INFO     | sum of deviations: 516433645849.3475
[2025-11-27 20:47:44] 2025-11-27 13:38:37,124 | INFO     | mean x: 1764235641.068323
[2025-11-27 20:47:44] 2025-11-27 13:38:37,124 | INFO     | mean y: 2902054.565217391
[2025-11-27 20:47:44] 2025-11-27 13:38:37,124 | INFO     | intersect: -26072387879.44653
[2025-11-27 20:47:44] 2025-11-27 13:38:37,125 | INFO     | chi2: 2.118096641624592
[2025-11-27 20:47:44] 2025-11-27 13:38:37,125 | INFO     | current chi2=2.118096641624592 (change=46.83645994360497 %)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,125 | INFO     | sum of square deviations: 33867714004.937294
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | sum of deviations: 509049222687.0547
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | mean x: 1764235488.5732217
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | mean y: 2901002.769874477
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | intersect: -26514469020.02501
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | chi2: 2.110321933059656
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | current chi2=2.110321933059656 (change=0.36706108740027843 %)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | right removable region: 477
[2025-11-27 20:47:44] 2025-11-27 13:38:37,128 | INFO     | sum of square deviations: 34941426562.60055
[2025-11-27 20:47:44] 2025-11-27 13:38:37,131 | INFO     | sum of deviations: 283690343927.0519
[2025-11-27 20:47:44] 2025-11-27 13:38:37,131 | INFO     | mean x: 1764235946.0538301
[2025-11-27 20:47:44] 2025-11-27 13:38:37,131 | INFO     | mean y: 2902251.728778468
[2025-11-27 20:47:44] 2025-11-27 13:38:37,131 | INFO     | intersect: -14320974920.481012
[2025-11-27 20:47:44] 2025-11-27 13:38:37,132 | INFO     | chi2: 2.092451692420495
[2025-11-27 20:47:44] 2025-11-27 13:38:37,132 | INFO     | current chi2=2.092451692420495 (change=47.480139867109564 %)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,132 | INFO     | sum of square deviations: 33867677350.577473
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | sum of deviations: 246320121105.35553
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | mean x: 1764236098.5439332
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | mean y: 2907555.8640167364
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | intersect: -12828407829.4047
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | chi2: 2.000011506397304
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | current chi2=2.000011506397304 (change=4.417793077758391 %)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,135 | INFO     | left removable region: 20
[2025-11-27 20:47:44] 2025-11-27 13:38:37,136 | INFO     | sum of square deviations: 29597534199.159676
[2025-11-27 20:47:44] 2025-11-27 13:38:37,138 | INFO     | sum of deviations: 304499741353.66516
[2025-11-27 20:47:44] 2025-11-27 13:38:37,138 | INFO     | mean x: 1764236068.0634573
[2025-11-27 20:47:44] 2025-11-27 13:38:37,138 | INFO     | mean y: 2930672.90809628
[2025-11-27 20:47:44] 2025-11-27 13:38:37,138 | INFO     | intersect: -18147548444.6186
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | chi2: 0.06350739902995689
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | current memory leak: 10.29 B/s (using 457 data points, chi2=0.06)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | could have reported an average CPU frequency of 3799 MHz (20 samples)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | ..............................
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . Timing measurements:
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . get job = 0 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . initial setup = 0 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . payload setup = 6 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . stage-in = 0 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . payload execution = 29769 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,139 | INFO     | . stage-out = 3 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,140 | INFO     | . log creation = 0 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,140 | INFO     | ..............................
[2025-11-27 20:47:44] 2025-11-27 13:38:37,188 | INFO     | 
[2025-11-27 20:47:44] 2025-11-27 13:38:37,188 | INFO     | job summary report
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | --------------------------------------------------
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | PanDA job id: 6898177498
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | task id: 47556161
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | errors: (none)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | pilot state: finished 
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | transexitcode: 0
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | exeerrorcode: 0
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | exeerrordiag: 
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | exitcode: 0
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | exitmsg: OK
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | cpuconsumptiontime: 136591 s
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | nevents: 1000
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | neventsw: 0
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | pid: 1309
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | pgrp: 1309
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | corecount: 8
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | event service: False
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 11: 2284582, 29780: 2323398, 29785: 2332576, 29794: 2332766}
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | --------------------------------------------------
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | 
[2025-11-27 20:47:44] 2025-11-27 13:38:37,189 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:47:44] 2025-11-27 13:38:37,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | job 6898177498 has completed (purged errors)
[2025-11-27 20:47:44] 2025-11-27 13:38:37,216 | INFO     | overall cleanup function is called
[2025-11-27 20:47:44] 2025-11-27 13:38:38,259 | INFO     | --- collectZombieJob: --- 10, [1309]
[2025-11-27 20:47:44] 2025-11-27 13:38:38,259 | INFO     | zombie collector waiting for pid 1309
[2025-11-27 20:47:44] 2025-11-27 13:38:38,259 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:47:44] 2025-11-27 13:38:38,259 | INFO     | collected zombie processes
[2025-11-27 20:47:44] 2025-11-27 13:38:38,259 | INFO     | will attempt to kill all subprocesses of pid=1309
[2025-11-27 20:47:44] 2025-11-27 13:38:38,846 | INFO     | process IDs to be killed: [1309] (in reverse order)
[2025-11-27 20:47:44] 2025-11-27 13:38:39,032 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:47:44] 2025-11-27 13:38:39,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:47:44] 2025-11-27 13:38:39,057 | INFO     | did not find any defunct processes belonging to 1309
[2025-11-27 20:47:44] 2025-11-27 13:38:39,082 | INFO     | did not find any defunct processes belonging to 1309
[2025-11-27 20:47:44] 2025-11-27 13:38:39,082 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:47:44] 2025-11-27 13:38:39,083 | INFO     | ready for new job
[2025-11-27 20:47:44] 2025-11-27 13:38:39,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:47:44] 2025-11-27 13:38:39,085 | INFO     | ***************************************
[2025-11-27 20:47:44] 2025-11-27 13:38:39,085 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:47:44] 2025-11-27 13:38:39,085 | INFO     | ***************************************
[2025-11-27 20:47:44] 2025-11-27 13:38:39,085 | INFO     | 
[2025-11-27 20:47:44] 2025-11-27 13:38:39,090 | INFO     | architecture information:
[2025-11-27 20:47:44] 2025-11-27 13:38:39,091 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:47:44] 2025-11-27 13:38:39,112 | INFO     | cat /etc/os-release:
[2025-11-27 20:47:44] NAME="CentOS Linux"
[2025-11-27 20:47:44] VERSION="7 (Core)"
[2025-11-27 20:47:44] ID="centos"
[2025-11-27 20:47:44] ID_LIKE="rhel fedora"
[2025-11-27 20:47:44] VERSION_ID="7"
[2025-11-27 20:47:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:47:44] ANSI_COLOR="0;31"
[2025-11-27 20:47:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:47:44] HOME_URL="https://www.centos.org/"
[2025-11-27 20:47:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:47:44] 
[2025-11-27 20:47:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:47:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:47:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:47:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:47:44] 
[2025-11-27 20:47:44] 2025-11-27 13:38:39,112 | INFO     | ***************************************
[2025-11-27 20:47:44] 2025-11-27 13:38:39,615 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:47:44] 2025-11-27 13:38:39,637 | INFO     | sufficient remaining disk space (154829586432 B)
[2025-11-27 20:47:44] 2025-11-27 13:38:39,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:47:44] 2025-11-27 13:38:39,638 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:47:44] 2025-11-27 13:38:39,638 | INFO     | update_server=False
[2025-11-27 20:47:44] 2025-11-27 13:38:39,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:47:44] 2025-11-27 13:38:39,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:47:44] 2025-11-27 13:38:39,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:47:44] 2025-11-27 13:38:40,194 | INFO     | all job control threads have been joined
[2025-11-27 20:47:44] 2025-11-27 13:38:40,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:47:44] 2025-11-27 13:38:40,281 | INFO     | aborting loop
[2025-11-27 20:47:44] 2025-11-27 13:38:40,352 | INFO     | all data control threads have been joined
[2025-11-27 20:47:44] 2025-11-27 13:38:40,553 | INFO     | all payload control threads have been joined
[2025-11-27 20:47:44] 2025-11-27 13:38:40,644 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:40,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:40,930 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,199 | INFO     | [job] control thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,287 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,358 | INFO     | [data] control thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,558 | INFO     | [payload] control thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,563 | INFO     | [job] validate thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,599 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,652 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,707 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,801 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,819 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:41,990 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:42,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:47:44] 2025-11-27 13:38:43,209 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:38:43,654 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:47:44] 2025-11-27 13:39:10,002 | INFO     | PID=4108634 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:47:44] 2025-11-27 13:39:10,002 | INFO     | .. there are 49 such processes running
[2025-11-27 20:47:44] 2025-11-27 13:39:10,003 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:47:44] 2025-11-27 13:39:10,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:47:44] 2025-11-27 13:39:10,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:47:44] 2025-11-27 13:39:39,434 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:47:44] 2025-11-27 13:39:41,170 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955456345920)>', '<ExcThread(monitor, started 139954386626304)>']
[2025-11-27 20:47:44] 2025-11-27 13:39:41,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:47:44] 2025-11-27 13:39:41,225 | INFO     | [monitor] control thread has ended
[2025-11-27 20:47:44] 2025-11-27 13:39:46,196 | INFO     | all workflow threads have been joined
[2025-11-27 20:47:44] 2025-11-27 13:39:46,196 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:47:44] 2025-11-27 13:39:46,196 | INFO     | traces error code: 0
[2025-11-27 20:47:44] 2025-11-27 13:39:46,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:47:44] 2025-11-27 13:39:46,349 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:47:44] 2025-11-27 13:39:46,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:47:44] 2025-11-27 13:39:46,366 [wrapper] pilotpid: 4108634
[2025-11-27 20:47:44] 2025-11-27 13:39:46,383 [wrapper] Pilot exit status: 0
[2025-11-27 20:47:44] 2025-11-27 13:39:46,514 [wrapper] pandaids: 6898177498 6898177498
[2025-11-27 20:47:44] 2025-11-27 13:39:46,701 [wrapper] cleanup supervisor_pilot 2993828 4108635
[2025-11-27 20:47:44] 2025-11-27 13:39:46,704 [wrapper] Test setup, not cleaning
[2025-11-27 20:47:44] 2025-11-27 13:39:46,707 [wrapper] apfmon messages muted
[2025-11-27 20:47:44] 2025-11-27 13:39:46,710 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:47:44] 2025-11-27 13:39:46,712 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:47:44]  *** Error codes and diagnostics ***
[2025-11-27 20:47:44]     "exeErrorCode": 0,
[2025-11-27 20:47:44]     "exeErrorDiag": "",
[2025-11-27 20:47:44]     "pilotErrorCode": 0,
[2025-11-27 20:47:44]     "pilotErrorDiag": "",
[2025-11-27 20:47:44]  *** Listing of results directory ***
[2025-11-27 20:47:44] total 1720688
[2025-11-27 20:47:44] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 20:47:44] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:47:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:12 run_atlas
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:12 job.xml
[2025-11-27 20:47:44] -rw-r--r--. 3 boincer umatlas 410578874 Nov 27 00:12 EVNT.47483658._002468.pool.root.1
[2025-11-27 20:47:44] -rw-r--r--. 3 boincer umatlas 410578874 Nov 27 00:12 ATLAS.root_0
[2025-11-27 20:47:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:12 start_atlas.sh
[2025-11-27 20:47:44] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:12 shared
[2025-11-27 20:47:44] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:12 input.tar.gz
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:12 boinc_lockfile
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:21 pandaJob.out
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas        57 Nov 27 00:21 setup.sh.local
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas    991578 Nov 27 00:21 agis_schedconf.cvmfs.json
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas       532 Nov 27 08:32 boinc_task_state.xml
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas 925816022 Nov 27 08:37 HITS.47556161._004510.pool.root.1
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas      1077 Nov 27 08:38 memory_monitor_summary.json
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas   1745242 Nov 27 08:38 log.47556161._004510.job.log.tgz.1
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas        95 Nov 27 08:38 pilot_heartbeat.json
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas      8614 Nov 27 08:38 heartbeat.json
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas      4825 Nov 27 08:39 pilotlog.txt
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas   3795058 Nov 27 08:39 log.47556161._004510.job.log.1
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas       353 Nov 27 08:39 output.list
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:39 runtime_log
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas   5560320 Nov 27 08:39 result.tar.gz
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 08:39 runtime_log.err
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas       790 Nov 27 08:39 PywKDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2uMKDma4EzRn.diag
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 20:39 init_data.xml
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:47 boinc_mmap_file
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas     23578 Nov 27 20:47 stderr.txt
[2025-11-27 20:47:44] -rw-r--r--. 1 boincer umatlas        28 Nov 27 20:47 wrapper_checkpoint.txt
[2025-11-27 20:47:44] HITS file was successfully produced:
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas 925816022 Nov 27 08:37 shared/HITS.pool.root.1
[2025-11-27 20:47:44]  *** Contents of shared directory: ***
[2025-11-27 20:47:44] total 1311112
[2025-11-27 20:47:44] -rw-r--r--. 3 boincer umatlas 410578874 Nov 27 00:12 ATLAS.root_0
[2025-11-27 20:47:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:12 start_atlas.sh
[2025-11-27 20:47:44] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:12 input.tar.gz
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas 925816022 Nov 27 08:37 HITS.pool.root.1
[2025-11-27 20:47:44] -rw-------. 1 boincer umatlas   5560320 Nov 27 08:39 result.tar.gz
20:47:46 (4056466): run_atlas exited; CPU time 136969.142020
20:47:46 (4056466): called boinc_finish(0)

</stderr_txt>
]]>

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