Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:11 (3949796): wrapper (7.7.26015): starting
00:13:11 (3949796): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:13:11] Arguments: --nthreads 8
[2025-11-27 00:13:11] Threads: 8
[2025-11-27 00:13:11] Checking for CVMFS
[2025-11-27 00:13:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:13:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:13:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:13:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:13:15] 2.13.2.0 3557600 23853 211308 153348 3 45 38939158 40960000 42885 16776704 0 237099861 99.665 211968055 48527 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:13:15] CVMFS is ok
[2025-11-27 00:13:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:13:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:13:15] Further information can be found at the LHC@home message board.
[2025-11-27 00:13:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:13:15] Checking for apptainer binary...
[2025-11-27 00:13:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:13:15] Running /usr/bin/apptainer --version
[2025-11-27 00:13:15] apptainer version 1.4.4-1.el9
[2025-11-27 00:13:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:13:16] c-208-40.aglt2.org
[2025-11-27 00:13:16] apptainer works
[2025-11-27 00:13:16] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:13:16] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:13:16] Starting ATLAS job with PandaID=6892544879
[2025-11-27 00:13:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:12 (3949796): BOINC client no longer exists - exiting
00:20:12 (3949796): timer handler: client dead, exiting
00:21:34 (4056473): wrapper (7.7.26015): starting
00:21:34 (4056473): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:21:34] Arguments: --nthreads 8
[2025-11-27 00:21:34] Threads: 8
[2025-11-27 00:21:34] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:21:34] Checking for CVMFS
[2025-11-27 00:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:21:35] 2.13.2.0 3557600 23861 215404 153349 3 180 39029553 40960001 32191 16776704 0 237371418 99.664 211986254 48517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:21:35] CVMFS is ok
[2025-11-27 00:21:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:21:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:21:35] Further information can be found at the LHC@home message board.
[2025-11-27 00:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:21:35] Checking for apptainer binary...
[2025-11-27 00:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:21:35] Running /usr/bin/apptainer --version
[2025-11-27 00:21:35] apptainer version 1.4.4-1.el9
[2025-11-27 00:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:21:35] c-208-40.aglt2.org
[2025-11-27 00:21:35] apptainer works
[2025-11-27 00:21:35] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:21:35] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:21:35] Starting ATLAS job with PandaID=6892544879
[2025-11-27 00:21:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:48:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:48:28] 2025-11-28 01:46:51,905 | INFO     | monitor loop #4636: job 0:6892544879 is in state 'finished'
[2025-11-27 20:48:28] 2025-11-28 01:46:51,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:48:28] 2025-11-28 01:46:53,563 | INFO     | time since job start (73506s) is within the limit (172800.0s)
[2025-11-27 20:48:28] 2025-11-28 01:46:53,990 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:48:28] 2025-11-28 01:46:53,995 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3798.904039062499
[2025-11-27 20:48:28] 2025-11-28 01:46:54,011 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6892544879/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,011 | INFO     | extracted standard info from prmon json
[2025-11-27 20:48:28] 2025-11-28 01:46:54,011 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:48:28] 2025-11-28 01:46:54,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:48:28] 2025-11-28 01:46:54,024 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:48:28] 2025-11-28 01:46:54,026 | INFO     | sum of square deviations: 542477503489.7977
[2025-11-27 20:48:28] 2025-11-28 01:46:54,043 | INFO     | sum of deviations: 3217784317114.856
[2025-11-27 20:48:28] 2025-11-28 01:46:54,043 | INFO     | mean x: 1764257661.753527
[2025-11-27 20:48:28] 2025-11-28 01:46:54,043 | INFO     | mean y: 2884181.8580912864
[2025-11-27 20:48:28] 2025-11-28 01:46:54,044 | INFO     | intersect: -10462067081.22593
[2025-11-27 20:48:28] 2025-11-28 01:46:54,044 | INFO     | chi2: 6.439842739533062
[2025-11-27 20:48:28] 2025-11-28 01:46:54,045 | INFO     | sum of square deviations: 535752403229.35876
[2025-11-27 20:48:28] 2025-11-28 01:46:54,061 | INFO     | sum of deviations: 3667931429491.3706
[2025-11-27 20:48:28] 2025-11-28 01:46:54,061 | INFO     | mean x: 1764257509.2608333
[2025-11-27 20:48:28] 2025-11-28 01:46:54,061 | INFO     | mean y: 2894389.51
[2025-11-27 20:48:28] 2025-11-28 01:46:54,061 | INFO     | intersect: -12075773907.501118
[2025-11-27 20:48:28] 2025-11-28 01:46:54,062 | INFO     | chi2: 2.635447514672496
[2025-11-27 20:48:28] 2025-11-28 01:46:54,062 | INFO     | current chi2=2.635447514672496 (change=59.07590260715612 %)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,063 | INFO     | sum of square deviations: 529083044649.3272
[2025-11-27 20:48:28] 2025-11-28 01:46:54,078 | INFO     | sum of deviations: 3772899971899.633
[2025-11-27 20:48:28] 2025-11-28 01:46:54,079 | INFO     | mean x: 1764257356.767364
[2025-11-27 20:48:28] 2025-11-28 01:46:54,079 | INFO     | mean y: 2896786.2828451884
[2025-11-27 20:48:28] 2025-11-28 01:46:54,079 | INFO     | intersect: -12578051703.917034
[2025-11-27 20:48:28] 2025-11-28 01:46:54,080 | INFO     | chi2: 2.2294994133535972
[2025-11-27 20:48:28] 2025-11-28 01:46:54,080 | INFO     | current chi2=2.2294994133535972 (change=15.403384019557882 %)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,080 | INFO     | right removable region: 1194
[2025-11-27 20:48:28] 2025-11-28 01:46:54,080 | INFO     | sum of square deviations: 535751187562.8801
[2025-11-27 20:48:28] 2025-11-28 01:46:54,096 | INFO     | sum of deviations: 2927212500939.5176
[2025-11-27 20:48:28] 2025-11-28 01:46:54,096 | INFO     | mean x: 1764257814.26
[2025-11-27 20:48:28] 2025-11-28 01:46:54,097 | INFO     | mean y: 2890761.54
[2025-11-27 20:48:28] 2025-11-28 01:46:54,097 | INFO     | intersect: -9636579292.226273
[2025-11-27 20:48:28] 2025-11-28 01:46:54,097 | INFO     | chi2: 4.60018438999946
[2025-11-27 20:48:28] 2025-11-28 01:46:54,097 | INFO     | current chi2=4.60018438999946 (change=28.566821022511355 %)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,098 | INFO     | sum of square deviations: 529080979809.9803
[2025-11-27 20:48:28] 2025-11-28 01:46:54,114 | INFO     | sum of deviations: 2829956224585.8145
[2025-11-27 20:48:28] 2025-11-28 01:46:54,114 | INFO     | mean x: 1764257966.76318
[2025-11-27 20:48:28] 2025-11-28 01:46:54,114 | INFO     | mean y: 2892984.8368200837
[2025-11-27 20:48:28] 2025-11-28 01:46:54,114 | INFO     | intersect: -9433796303.464058
[2025-11-27 20:48:28] 2025-11-28 01:46:54,115 | INFO     | chi2: 4.531859150499887
[2025-11-27 20:48:28] 2025-11-28 01:46:54,115 | INFO     | current chi2=4.531859150499887 (change=1.4852717566736675 %)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,115 | INFO     | left removable region: 20
[2025-11-27 20:48:28] 2025-11-28 01:46:54,116 | INFO     | sum of square deviations: 501673603291.40436
[2025-11-27 20:48:28] 2025-11-28 01:46:54,131 | INFO     | sum of deviations: 3220710948671.2026
[2025-11-27 20:48:28] 2025-11-28 01:46:54,131 | INFO     | mean x: 1764257936.2700171
[2025-11-27 20:48:28] 2025-11-28 01:46:54,131 | INFO     | mean y: 2909206.3211243614
[2025-11-27 20:48:28] 2025-11-28 01:46:54,131 | INFO     | intersect: -11323508636.565334
[2025-11-27 20:48:28] 2025-11-28 01:46:54,132 | INFO     | chi2: 0.2541921140354584
[2025-11-27 20:48:28] 2025-11-28 01:46:54,132 | INFO     | current memory leak: 6.42 B/s (using 1174 data points, chi2=0.25)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,133 | INFO     | could have reported an average CPU frequency of 3796 MHz (44 samples)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | ..............................
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . Timing measurements:
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . get job = 0 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . initial setup = 0 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . payload setup = 6 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . stage-in = 0 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . payload execution = 73468 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . stage-out = 3 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | . log creation = 0 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,134 | INFO     | ..............................
[2025-11-27 20:48:28] 2025-11-28 01:46:54,660 | INFO     | 
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | job summary report
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | --------------------------------------------------
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | PanDA job id: 6892544879
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | task id: 47493029
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | errors: (none)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | pilot state: finished 
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | transexitcode: 0
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | exeerrorcode: 0
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | exeerrordiag: 
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | exitcode: 0
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | exitmsg: OK
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | cpuconsumptiontime: 143435 s
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | nevents: 1000
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | neventsw: 0
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | pid: 1348
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | pgrp: 1348
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | corecount: 8
[2025-11-27 20:48:28] 2025-11-28 01:46:54,661 | INFO     | event service: False
[2025-11-27 20:48:28] 2025-11-28 01:46:54,662 | INFO     | sizes: {0: 2284127, 1: 2284326, 6: 2284588, 11: 2284616, 73479: 2344250, 73484: 2353244, 73486: 2353428, 73491: 2353674}
[2025-11-27 20:48:28] 2025-11-28 01:46:54,662 | INFO     | --------------------------------------------------
[2025-11-27 20:48:28] 2025-11-28 01:46:54,662 | INFO     | 
[2025-11-27 20:48:28] 2025-11-28 01:46:54,662 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 20:48:28] 2025-11-28 01:46:54,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:48:28] 2025-11-28 01:46:54,688 | INFO     | job 6892544879 has completed (purged errors)
[2025-11-27 20:48:28] 2025-11-28 01:46:54,688 | INFO     | overall cleanup function is called
[2025-11-27 20:48:28] 2025-11-28 01:46:55,738 | INFO     | --- collectZombieJob: --- 10, [1348]
[2025-11-27 20:48:28] 2025-11-28 01:46:55,738 | INFO     | zombie collector waiting for pid 1348
[2025-11-27 20:48:28] 2025-11-28 01:46:55,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:48:28] 2025-11-28 01:46:55,738 | INFO     | collected zombie processes
[2025-11-27 20:48:28] 2025-11-28 01:46:55,738 | INFO     | will attempt to kill all subprocesses of pid=1348
[2025-11-27 20:48:28] 2025-11-28 01:46:56,233 | INFO     | process IDs to be killed: [1348] (in reverse order)
[2025-11-27 20:48:28] 2025-11-28 01:46:56,391 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:48:28] 2025-11-28 01:46:56,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:48:28] 2025-11-28 01:46:56,417 | INFO     | did not find any defunct processes belonging to 1348
[2025-11-27 20:48:28] 2025-11-28 01:46:56,443 | INFO     | did not find any defunct processes belonging to 1348
[2025-11-27 20:48:28] 2025-11-28 01:46:56,444 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:48:28] 2025-11-28 01:46:56,444 | INFO     | ready for new job
[2025-11-27 20:48:28] 2025-11-28 01:46:56,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:48:28] 2025-11-28 01:46:56,448 | INFO     | ***************************************
[2025-11-27 20:48:28] 2025-11-28 01:46:56,448 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:48:28] 2025-11-28 01:46:56,448 | INFO     | ***************************************
[2025-11-27 20:48:28] 2025-11-28 01:46:56,448 | INFO     | 
[2025-11-27 20:48:28] 2025-11-28 01:46:56,453 | INFO     | architecture information:
[2025-11-27 20:48:28] 2025-11-28 01:46:56,454 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:48:28] 2025-11-28 01:46:56,472 | INFO     | cat /etc/os-release:
[2025-11-27 20:48:28] NAME="CentOS Linux"
[2025-11-27 20:48:28] VERSION="7 (Core)"
[2025-11-27 20:48:28] ID="centos"
[2025-11-27 20:48:28] ID_LIKE="rhel fedora"
[2025-11-27 20:48:28] VERSION_ID="7"
[2025-11-27 20:48:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:48:28] ANSI_COLOR="0;31"
[2025-11-27 20:48:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:48:28] HOME_URL="https://www.centos.org/"
[2025-11-27 20:48:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:48:28] 
[2025-11-27 20:48:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:48:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:48:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:48:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:48:28] 
[2025-11-27 20:48:28] 2025-11-28 01:46:56,473 | INFO     | ***************************************
[2025-11-27 20:48:28] 2025-11-28 01:46:56,976 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 20:48:28] 2025-11-28 01:46:57,006 | INFO     | sufficient remaining disk space (151293788160 B)
[2025-11-27 20:48:28] 2025-11-28 01:46:57,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:48:28] 2025-11-28 01:46:57,007 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:48:28] 2025-11-28 01:46:57,007 | INFO     | update_server=False
[2025-11-27 20:48:28] 2025-11-28 01:46:57,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:48:28] 2025-11-28 01:46:57,131 | INFO     | all job control threads have been joined
[2025-11-27 20:48:28] 2025-11-28 01:46:57,447 | INFO     | all payload control threads have been joined
[2025-11-27 20:48:28] 2025-11-28 01:46:57,519 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:48:28] 2025-11-28 01:46:57,632 | INFO     | all data control threads have been joined
[2025-11-27 20:48:28] 2025-11-28 01:46:57,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:48:28] 2025-11-28 01:46:57,922 | INFO     | aborting loop
[2025-11-27 20:48:28] 2025-11-28 01:46:58,012 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,136 | INFO     | [job] control thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,186 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,276 | INFO     | [job] validate thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,417 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,418 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,434 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,452 | INFO     | [payload] control thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,638 | INFO     | [data] control thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:58,927 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:59,126 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:59,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:48:28] 2025-11-28 01:46:59,357 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:59,423 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:59,525 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:46:59,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:48:28] 2025-11-28 01:47:00,243 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:47:03,654 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:48:28] 2025-11-28 01:47:27,135 | INFO     | PID=4108484 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:48:28] 2025-11-28 01:47:27,137 | INFO     | .. there are 42 such processes running
[2025-11-27 20:48:28] 2025-11-28 01:47:27,137 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:48:28] 2025-11-28 01:47:27,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:48:28] 2025-11-28 01:47:27,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:48:28] 2025-11-28 01:47:53,048 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:48:28] 2025-11-28 01:47:54,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139868257810240)>', '<ExcThread(monitor, started 139867405145856)>']
[2025-11-27 20:48:28] 2025-11-28 01:47:55,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:48:28] 2025-11-28 01:47:55,285 | INFO     | [monitor] control thread has ended
[2025-11-27 20:48:28] 2025-11-28 01:47:59,551 | INFO     | all workflow threads have been joined
[2025-11-27 20:48:28] 2025-11-28 01:47:59,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:48:28] 2025-11-28 01:47:59,552 | INFO     | traces error code: 0
[2025-11-27 20:48:28] 2025-11-28 01:47:59,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:48:28] 2025-11-28 01:47:59,825 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:48:28] 2025-11-28 01:47:59,829 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:48:28] 2025-11-28 01:47:59,832 [wrapper] pilotpid: 4108484
[2025-11-27 20:48:28] 2025-11-28 01:47:59,838 [wrapper] Pilot exit status: 0
[2025-11-27 20:48:28] 2025-11-28 01:47:59,854 [wrapper] pandaids: 6892544879 6892544879
[2025-11-27 20:48:28] 2025-11-28 01:47:59,965 [wrapper] cleanup supervisor_pilot 2493777 4108486
[2025-11-27 20:48:28] 2025-11-28 01:47:59,968 [wrapper] Test setup, not cleaning
[2025-11-27 20:48:28] 2025-11-28 01:47:59,972 [wrapper] apfmon messages muted
[2025-11-27 20:48:28] 2025-11-28 01:47:59,975 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:48:28] 2025-11-28 01:47:59,978 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:48:28]  *** Error codes and diagnostics ***
[2025-11-27 20:48:28]     "exeErrorCode": 0,
[2025-11-27 20:48:28]     "exeErrorDiag": "",
[2025-11-27 20:48:28]     "pilotErrorCode": 0,
[2025-11-27 20:48:28]     "pilotErrorDiag": "",
[2025-11-27 20:48:28]  *** Listing of results directory ***
[2025-11-27 20:48:28] total 1723988
[2025-11-27 20:48:28] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:11 pilot3.tar.gz
[2025-11-27 20:48:28] -rwx------. 1 boincer umatlas     36292 Nov 19 03:15 runpilot2-wrapper.sh
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:15 queuedata.json
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:48:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:13 run_atlas
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:13 job.xml
[2025-11-27 20:48:28] -rw-r--r--. 3 boincer umatlas 410461064 Nov 27 00:13 EVNT.47493027._000289.pool.root.1
[2025-11-27 20:48:28] -rw-r--r--. 3 boincer umatlas 410461064 Nov 27 00:13 ATLAS.root_0
[2025-11-27 20:48:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:13 start_atlas.sh
[2025-11-27 20:48:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:13 shared
[2025-11-27 20:48:28] -rw-r--r--. 2 boincer umatlas    590091 Nov 27 00:13 input.tar.gz
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:13 boinc_lockfile
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas      2770 Nov 27 00:21 pandaJob.out
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas    991578 Nov 27 00:21 agis_schedconf.cvmfs.json
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas       530 Nov 27 20:37 boinc_task_state.xml
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas 916854135 Nov 27 20:46 HITS.47493029._002841.pool.root.1
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas      1079 Nov 27 20:46 memory_monitor_summary.json
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas   2298039 Nov 27 20:46 log.47493029._002841.job.log.tgz.1
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas        95 Nov 27 20:46 pilot_heartbeat.json
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas      8632 Nov 27 20:46 heartbeat.json
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 20:47 init_data.xml
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas      4825 Nov 27 20:47 pilotlog.txt
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas   9527768 Nov 27 20:47 log.47493029._002841.job.log.1
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas       353 Nov 27 20:48 output.list
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:48 runtime_log
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas  11847680 Nov 27 20:48 result.tar.gz
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas      8789 Nov 27 20:48 runtime_log.err
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas       791 Nov 27 20:48 d0GODmOWsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR0GKDmeyiWon.diag
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas        27 Nov 27 20:48 wrapper_checkpoint.txt
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:48 boinc_mmap_file
[2025-11-27 20:48:28] -rw-r--r--. 1 boincer umatlas     23585 Nov 27 20:48 stderr.txt
[2025-11-27 20:48:28] HITS file was successfully produced:
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas 916854135 Nov 27 20:46 shared/HITS.pool.root.1
[2025-11-27 20:48:28]  *** Contents of shared directory: ***
[2025-11-27 20:48:28] total 1308388
[2025-11-27 20:48:28] -rw-r--r--. 3 boincer umatlas 410461064 Nov 27 00:13 ATLAS.root_0
[2025-11-27 20:48:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:13 start_atlas.sh
[2025-11-27 20:48:28] -rw-r--r--. 2 boincer umatlas    590091 Nov 27 00:13 input.tar.gz
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas 916854135 Nov 27 20:46 HITS.pool.root.1
[2025-11-27 20:48:28] -rw-------. 1 boincer umatlas  11847680 Nov 27 20:48 result.tar.gz
20:48:30 (4056473): run_atlas exited; CPU time 144587.543307
20:48:30 (4056473): called boinc_finish(0)

</stderr_txt>
]]>

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