Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:40 (3398794): wrapper (7.7.26015): starting
00:09:40 (3398794): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:09:40] Arguments: --nthreads 9
[2025-11-27 00:09:40] Threads: 9
[2025-11-27 00:09:40] Checking for CVMFS
[2025-11-27 00:09:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:09:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:09:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:09:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:09:42] 2.13.3.0 11285 31006 343396 153347 1 678 23821847 32935937 56739 16776704 0 227916407 99.609 240306728 37840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:09:42] CVMFS is ok
[2025-11-27 00:09:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:09:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:09:42] Further information can be found at the LHC@home message board.
[2025-11-27 00:09:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:09:42] Checking for apptainer binary...
[2025-11-27 00:09:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:09:42] Running /usr/bin/apptainer --version
[2025-11-27 00:09:42] apptainer version 1.4.4-1.el9
[2025-11-27 00:09:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:09:42] c7-3-29.aglt2.org
[2025-11-27 00:09:42] apptainer works
[2025-11-27 00:09:42] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:09:42] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:09:42] Starting ATLAS job with PandaID=6898176673
[2025-11-27 00:09:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:56:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:56:45] 2025-11-28 02:55:30,225 | INFO     | executing command: lscpu
[2025-11-27 21:56:45] 2025-11-28 02:55:30,331 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 21:56:45] 2025-11-28 02:55:31,138 | INFO     | time since job start (78317s) is within the limit (172800.0s)
[2025-11-27 21:56:45] 2025-11-28 02:55:32,631 | INFO     | monitor loop #4355: job 0:6898176673 is in state 'finished'
[2025-11-27 21:56:45] 2025-11-28 02:55:32,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:45] 2025-11-28 02:55:33,150 | INFO     | time since job start (78319s) is within the limit (172800.0s)
[2025-11-27 21:56:45] 2025-11-28 02:55:35,141 | INFO     | monitor loop #4356: job 0:6898176673 is in state 'finished'
[2025-11-27 21:56:45] 2025-11-28 02:55:35,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:45] 2025-11-28 02:55:37,868 | INFO     | monitor loop #4357: job 0:6898176673 is in state 'finished'
[2025-11-27 21:56:45] 2025-11-28 02:55:37,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:45] 2025-11-28 02:55:40,413 | INFO     | monitor loop #4358: job 0:6898176673 is in state 'finished'
[2025-11-27 21:56:45] 2025-11-28 02:55:40,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:45] 2025-11-28 02:55:42,174 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:56:45] 2025-11-28 02:55:42,179 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3151.7087708333324
[2025-11-27 21:56:45] 2025-11-28 02:55:42,342 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6898176673/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:56:45] 2025-11-28 02:55:42,343 | INFO     | extracted standard info from prmon json
[2025-11-27 21:56:45] 2025-11-28 02:55:42,343 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:56:45] 2025-11-28 02:55:42,343 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:56:45] 2025-11-28 02:55:42,650 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:56:45] 2025-11-28 02:55:42,651 | INFO     | sum of square deviations: 654872709433.5583
[2025-11-27 21:56:45] 2025-11-28 02:55:42,814 | INFO     | PID=3414085 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:56:45] 2025-11-28 02:55:42,815 | INFO     | .. there are 75 such processes running
[2025-11-27 21:56:45] 2025-11-28 02:55:42,915 | INFO     | sum of deviations: 4165375941771.924
[2025-11-27 21:56:45] 2025-11-28 02:55:42,915 | INFO     | mean x: 1764259377.0335152
[2025-11-27 21:56:45] 2025-11-28 02:55:42,915 | INFO     | mean y: 2975135.0015588463
[2025-11-27 21:56:45] 2025-11-28 02:55:42,915 | INFO     | intersect: -11218753085.277128
[2025-11-27 21:56:45] 2025-11-28 02:55:42,916 | INFO     | chi2: 17.16739819535034
[2025-11-27 21:56:45] 2025-11-28 02:55:42,917 | INFO     | sum of square deviations: 647246542955.6976
[2025-11-27 21:56:45] 2025-11-28 02:55:42,984 | INFO     | monitor loop #4359: job 0:6898176673 is in state 'finished'
[2025-11-27 21:56:45] 2025-11-28 02:55:42,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:56:45] 2025-11-28 02:55:43,093 | INFO     | sum of deviations: 4632625070623.181
[2025-11-27 21:56:45] 2025-11-28 02:55:43,094 | INFO     | mean x: 1764259224.5375588
[2025-11-27 21:56:45] 2025-11-28 02:55:43,094 | INFO     | mean y: 2984477.7566510173
[2025-11-27 21:56:45] 2025-11-28 02:55:43,094 | INFO     | intersect: -12624586273.486956
[2025-11-27 21:56:45] 2025-11-28 02:55:43,095 | INFO     | chi2: 13.583089959306326
[2025-11-27 21:56:45] 2025-11-28 02:55:43,095 | INFO     | current chi2=13.583089959306326 (change=20.878575747225327 %)
[2025-11-27 21:56:45] 2025-11-28 02:55:43,095 | INFO     | right removable region: 1277
[2025-11-27 21:56:45] 2025-11-28 02:55:43,100 | INFO     | sum of square deviations: 647245734095.6964
[2025-11-27 21:56:45] 2025-11-28 02:55:43,160 | INFO     | sum of deviations: 3656360770948.11
[2025-11-27 21:56:45] 2025-11-28 02:55:43,160 | INFO     | mean x: 1764259529.5375588
[2025-11-27 21:56:45] 2025-11-28 02:55:43,160 | INFO     | mean y: 2985311.633020344
[2025-11-27 21:56:45] 2025-11-28 02:55:43,160 | INFO     | intersect: -9963506537.996908
[2025-11-27 21:56:45] 2025-11-28 02:55:43,165 | INFO     | chi2: 13.440496963222163
[2025-11-27 21:56:45] 2025-11-28 02:55:43,165 | INFO     | current chi2=13.440496963222163 (change=21.70917916459572 %)
[2025-11-27 21:56:45] 2025-11-28 02:55:43,165 | INFO     | left removable region: 10
[2025-11-27 21:56:45] 2025-11-28 02:55:43,166 | INFO     | sum of square deviations: 630676270808.2527
[2025-11-27 21:56:45] 2025-11-28 02:55:43,259 | INFO     | sum of deviations: 3837976753572.4604
[2025-11-27 21:56:45] 2025-11-28 02:55:43,259 | INFO     | mean x: 1764259499.0465667
[2025-11-27 21:56:45] 2025-11-28 02:55:43,259 | INFO     | mean y: 3004671.90765588
[2025-11-27 21:56:45] 2025-11-28 02:55:43,259 | INFO     | intersect: -10733386180.299929
[2025-11-27 21:56:45] 2025-11-28 02:55:43,260 | INFO     | chi2: 6.987803566349312
[2025-11-27 21:56:45] 2025-11-28 02:55:43,260 | INFO     | current memory leak: 6.09 B/s (using 1267 data points, chi2=6.99)
[2025-11-27 21:56:45] 2025-11-28 02:55:43,292 | INFO     | could have reported an average CPU frequency of 3185 MHz (46 samples)
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | ..............................
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . Timing measurements:
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . get job = 0 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . initial setup = 3 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . payload setup = 16 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . stage-in = 0 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . payload execution = 78232 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . stage-out = 22 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | . log creation = 8 s
[2025-11-27 21:56:45] 2025-11-28 02:55:43,293 | INFO     | ..............................
[2025-11-27 21:56:45] 2025-11-28 02:55:43,830 | INFO     | time since job start (78329s) is within the limit (172800.0s)
[2025-11-27 21:56:45] 2025-11-28 02:55:44,289 | INFO     | 
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | job summary report
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | --------------------------------------------------
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | PanDA job id: 6898176673
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | task id: 47556161
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | errors: (none)
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | pilot state: finished 
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | transexitcode: 0
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | exeerrorcode: 0
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | exeerrordiag: 
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | exitcode: 0
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | exitmsg: OK
[2025-11-27 21:56:45] 2025-11-28 02:55:44,294 | INFO     | cpuconsumptiontime: 207066 s
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | nevents: 1000
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | neventsw: 0
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | pid: 3437866
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | pgrp: 3437866
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | corecount: 9
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | event service: False
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | sizes: {0: 2284093, 1: 2284292, 2: 2284320, 13: 2284320, 18: 2284638, 23: 2284666, 78254: 2343990, 78255: 2343989, 78278: 2353095, 78295: 2353285}
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | --------------------------------------------------
[2025-11-27 21:56:45] 2025-11-28 02:55:44,295 | INFO     | 
[2025-11-27 21:56:45] 2025-11-28 02:55:44,308 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 21:56:45] 2025-11-28 02:55:44,355 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,356 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:56:45] 2025-11-28 02:55:44,358 | INFO     | job 6898176673 has completed (purged errors)
[2025-11-27 21:56:45] 2025-11-28 02:55:44,358 | INFO     | overall cleanup function is called
[2025-11-27 21:56:45] 2025-11-28 02:55:45,378 | INFO     | --- collectZombieJob: --- 10, [3437866]
[2025-11-27 21:56:45] 2025-11-28 02:55:45,379 | INFO     | zombie collector waiting for pid 3437866
[2025-11-27 21:56:45] 2025-11-28 02:55:45,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:56:45] 2025-11-28 02:55:45,379 | INFO     | collected zombie processes
[2025-11-27 21:56:45] 2025-11-28 02:55:45,379 | INFO     | will attempt to kill all subprocesses of pid=3437866
[2025-11-27 21:56:45] 2025-11-28 02:55:50,497 | INFO     | process IDs to be killed: [3437866] (in reverse order)
[2025-11-27 21:56:45] 2025-11-28 02:55:50,808 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:56:45] 2025-11-28 02:55:50,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:56:45] 2025-11-28 02:55:50,882 | INFO     | did not find any defunct processes belonging to 3437866
[2025-11-27 21:56:45] 2025-11-28 02:55:51,049 | INFO     | did not find any defunct processes belonging to 3437866
[2025-11-27 21:56:45] 2025-11-28 02:55:51,077 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:56:45] 2025-11-28 02:55:51,078 | INFO     | ready for new job
[2025-11-27 21:56:45] 2025-11-28 02:55:51,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:56:45] 2025-11-28 02:55:51,104 | INFO     | ***************************************
[2025-11-27 21:56:45] 2025-11-28 02:55:51,104 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:56:45] 2025-11-28 02:55:51,105 | INFO     | ***************************************
[2025-11-27 21:56:45] 2025-11-28 02:55:51,105 | INFO     | 
[2025-11-27 21:56:45] 2025-11-28 02:55:51,132 | INFO     | architecture information:
[2025-11-27 21:56:45] 2025-11-28 02:55:51,158 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:56:45] 2025-11-28 02:55:51,266 | INFO     | cat /etc/os-release:
[2025-11-27 21:56:45] NAME="CentOS Linux"
[2025-11-27 21:56:45] VERSION="7 (Core)"
[2025-11-27 21:56:45] ID="centos"
[2025-11-27 21:56:45] ID_LIKE="rhel fedora"
[2025-11-27 21:56:45] VERSION_ID="7"
[2025-11-27 21:56:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:56:45] ANSI_COLOR="0;31"
[2025-11-27 21:56:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:56:45] HOME_URL="https://www.centos.org/"
[2025-11-27 21:56:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:56:45] 
[2025-11-27 21:56:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:56:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:56:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:56:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:56:45] 
[2025-11-27 21:56:45] 2025-11-28 02:55:51,266 | INFO     | ***************************************
[2025-11-27 21:56:45] 2025-11-28 02:55:51,769 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 21:56:45] 2025-11-28 02:55:51,969 | INFO     | sufficient remaining disk space (66559410176 B)
[2025-11-27 21:56:45] 2025-11-28 02:55:51,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:56:45] 2025-11-28 02:55:51,970 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:56:45] 2025-11-28 02:55:51,970 | INFO     | update_server=False
[2025-11-27 21:56:45] 2025-11-28 02:55:51,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:56:45] 2025-11-28 02:55:51,971 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:56:45] 2025-11-28 02:55:51,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:56:45] 2025-11-28 02:55:51,993 | INFO     | aborting loop
[2025-11-27 21:56:45] 2025-11-28 02:55:52,825 | INFO     | all payload control threads have been joined
[2025-11-27 21:56:45] 2025-11-28 02:55:52,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:56:45] 2025-11-28 02:55:52,928 | INFO     | all data control threads have been joined
[2025-11-27 21:56:45] 2025-11-28 02:55:52,929 | INFO     | all job control threads have been joined
[2025-11-27 21:56:45] 2025-11-28 02:55:52,976 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,003 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,006 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,070 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:56:45] 2025-11-28 02:55:53,830 | INFO     | [payload] control thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,881 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,891 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,892 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,954 | INFO     | [data] control thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,955 | INFO     | [job] control thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:53,990 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:54,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:54,151 | INFO     | [job] validate thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:54,471 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:54,929 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:55:55,997 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:56:45] 2025-11-28 02:56:30,058 | INFO     | PID=3414085 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:56:45] 2025-11-28 02:56:30,058 | INFO     | .. there are 75 such processes running
[2025-11-27 21:56:45] 2025-11-28 02:56:30,062 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:56:45] 2025-11-28 02:56:30,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:56:45] 2025-11-28 02:56:30,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:56:45] 2025-11-28 02:56:34,910 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:56:45] 2025-11-28 02:56:35,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208783275840)>', '<ExcThread(monitor, started 140208435607296)>']
[2025-11-27 21:56:45] 2025-11-28 02:56:36,134 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:56:45] 2025-11-28 02:56:36,135 | INFO     | [monitor] control thread has ended
[2025-11-27 21:56:45] 2025-11-28 02:56:40,614 | INFO     | all workflow threads have been joined
[2025-11-27 21:56:45] 2025-11-28 02:56:40,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:56:45] 2025-11-28 02:56:40,615 | INFO     | traces error code: 0
[2025-11-27 21:56:45] 2025-11-28 02:56:40,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:56:45] 2025-11-28 02:56:45,071 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:56:45] 2025-11-28 02:56:45,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:56:45] 2025-11-28 02:56:45,102 [wrapper] pilotpid: 3414085
[2025-11-27 21:56:45] 2025-11-28 02:56:45,110 [wrapper] Pilot exit status: 0
[2025-11-27 21:56:45] 2025-11-28 02:56:45,298 [wrapper] pandaids: 6898176673
[2025-11-27 21:56:45] 2025-11-28 02:56:45,581 [wrapper] cleanup supervisor_pilot 2380386 3414088
[2025-11-27 21:56:45] 2025-11-28 02:56:45,586 [wrapper] Test setup, not cleaning
[2025-11-27 21:56:45] 2025-11-28 02:56:45,588 [wrapper] apfmon messages muted
[2025-11-27 21:56:45] 2025-11-28 02:56:45,593 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:56:45] 2025-11-28 02:56:45,595 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:56:45]  *** Error codes and diagnostics ***
[2025-11-27 21:56:45]     "exeErrorCode": 0,
[2025-11-27 21:56:45]     "exeErrorDiag": "",
[2025-11-27 21:56:45]     "pilotErrorCode": 0,
[2025-11-27 21:56:45]     "pilotErrorDiag": "",
[2025-11-27 21:56:45]  *** Listing of results directory ***
[2025-11-27 21:56:45] total 1328976
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 21:56:45] -rwx------. 1 boincer umatlas     36292 Nov 25 23:00 runpilot2-wrapper.sh
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:56:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:09 run_atlas
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:09 job.xml
[2025-11-27 21:56:45] -rw-r--r--. 2 boincer umatlas 411636083 Nov 27 00:09 EVNT.47483658._002464.pool.root.1
[2025-11-27 21:56:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:09 start_atlas.sh
[2025-11-27 21:56:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:09 shared
[2025-11-27 21:56:45] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:09 input.tar.gz
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:09 boinc_lockfile
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:09 pandaJob.out
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas        57 Nov 27 00:09 setup.sh.local
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas    991570 Nov 27 00:10 agis_schedconf.cvmfs.json
[2025-11-27 21:56:45] drwx------. 5 boincer umatlas      4096 Nov 27 00:10 pilot3
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas       532 Nov 27 21:06 boinc_task_state.xml
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas      6945 Nov 27 21:48 init_data.xml
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas 921424826 Nov 27 21:54 HITS.47556161._004469.pool.root.1
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas      1084 Nov 27 21:54 memory_monitor_summary.json
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas   2458941 Nov 27 21:55 log.47556161._004469.job.log.tgz.1
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas      7936 Nov 27 21:55 heartbeat.json
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas        95 Nov 27 21:56 pilot_heartbeat.json
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas      4824 Nov 27 21:56 pilotlog.txt
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:56 boinc_mmap_file
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:56 wrapper_checkpoint.txt
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas   9487236 Nov 27 21:56 log.47556161._004469.job.log.1
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas       353 Nov 27 21:56 output.list
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:56 runtime_log
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas  11960320 Nov 27 21:56 result.tar.gz
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 21:56 runtime_log.err
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas       665 Nov 27 21:56 De8MDmssLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGuMKDmZlBChm.diag
[2025-11-27 21:56:45] -rw-r--r--. 1 boincer umatlas     21945 Nov 27 21:56 stderr.txt
[2025-11-27 21:56:45] HITS file was successfully produced:
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas 921424826 Nov 27 21:54 shared/HITS.pool.root.1
[2025-11-27 21:56:45]  *** Contents of shared directory: ***
[2025-11-27 21:56:45] total 1314108
[2025-11-27 21:56:45] -rw-r--r--. 2 boincer umatlas 411636083 Nov 27 00:09 ATLAS.root_0
[2025-11-27 21:56:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:09 start_atlas.sh
[2025-11-27 21:56:45] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:09 input.tar.gz
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas 921424826 Nov 27 21:54 HITS.pool.root.1
[2025-11-27 21:56:45] -rw-------. 1 boincer umatlas  11960320 Nov 27 21:56 result.tar.gz
21:56:47 (3398794): run_atlas exited; CPU time 208983.353765
21:56:47 (3398794): called boinc_finish(0)

</stderr_txt>
]]>

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