Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:40 (3409186): wrapper (7.7.26015): starting
00:04:40 (3409186): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:04:40] Arguments: --nthreads 9
[2025-11-27 00:04:40] Threads: 9
[2025-11-27 00:04:40] Checking for CVMFS
[2025-11-27 00:04:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:42] 2.13.3.0 11830 30912 374888 153347 3 591 28495925 32935936 41437 16776704 0 172545902 99.562 183902321 32810 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:04:42] CVMFS is ok
[2025-11-27 00:04:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:42] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:42] Checking for apptainer binary...
[2025-11-27 00:04:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:42] Running /usr/bin/apptainer --version
[2025-11-27 00:04:42] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:43] c6-8-25-1.aglt2.org
[2025-11-27 00:04:43] apptainer works
[2025-11-27 00:04:43] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:04:43] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:04:43] Starting ATLAS job with PandaID=6898176687
[2025-11-27 00:04:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:04:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:04:51] 2025-11-28 00:03:41,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,340 | INFO     | PID=3425657 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 19:04:51] 2025-11-28 00:03:42,340 | INFO     | .. there are 49 such processes running
[2025-11-27 19:04:51] 2025-11-28 00:03:42,409 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:04:51] 2025-11-28 00:03:42,416 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2593.612124999999
[2025-11-27 19:04:51] 2025-11-28 00:03:42,438 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898176687/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,439 | INFO     | extracted standard info from prmon json
[2025-11-27 19:04:51] 2025-11-28 00:03:42,439 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:04:51] 2025-11-28 00:03:42,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:04:51] 2025-11-28 00:03:42,459 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:04:51] 2025-11-28 00:03:42,461 | INFO     | sum of square deviations: 432154224816.8954
[2025-11-27 19:04:51] 2025-11-28 00:03:42,494 | INFO     | sum of deviations: 3228306404237.779
[2025-11-27 19:04:51] 2025-11-28 00:03:42,494 | INFO     | mean x: 1764254118.1557744
[2025-11-27 19:04:51] 2025-11-28 00:03:42,494 | INFO     | mean y: 3060098.351835273
[2025-11-27 19:04:51] 2025-11-28 00:03:42,494 | INFO     | intersect: -13176384973.042244
[2025-11-27 19:04:51] 2025-11-28 00:03:42,496 | INFO     | chi2: 8.249826933694743
[2025-11-27 19:04:51] 2025-11-28 00:03:42,497 | INFO     | sum of square deviations: 426377585793.55426
[2025-11-27 19:04:51] 2025-11-28 00:03:42,522 | INFO     | sum of deviations: 3586640862224.3135
[2025-11-27 19:04:51] 2025-11-28 00:03:42,523 | INFO     | mean x: 1764253965.6654677
[2025-11-27 19:04:51] 2025-11-28 00:03:42,523 | INFO     | mean y: 3069555.737410072
[2025-11-27 19:04:51] 2025-11-28 00:03:42,523 | INFO     | intersect: -14837638716.53293
[2025-11-27 19:04:51] 2025-11-28 00:03:42,524 | INFO     | chi2: 5.595043114489649
[2025-11-27 19:04:51] 2025-11-28 00:03:42,524 | INFO     | current chi2=5.595043114489649 (change=32.17987286935885 %)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,526 | INFO     | sum of square deviations: 420652600841.3528
[2025-11-27 19:04:51] 2025-11-28 00:03:42,553 | INFO     | sum of deviations: 3753212521008.9414
[2025-11-27 19:04:51] 2025-11-28 00:03:42,554 | INFO     | mean x: 1764253813.174345
[2025-11-27 19:04:51] 2025-11-28 00:03:42,554 | INFO     | mean y: 3073988.948509485
[2025-11-27 19:04:51] 2025-11-28 00:03:42,554 | INFO     | intersect: -15738227713.690994
[2025-11-27 19:04:51] 2025-11-28 00:03:42,555 | INFO     | chi2: 4.842284713855855
[2025-11-27 19:04:51] 2025-11-28 00:03:42,556 | INFO     | current chi2=4.842284713855855 (change=13.454023235037345 %)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,556 | INFO     | right removable region: 1106
[2025-11-27 19:04:51] 2025-11-28 00:03:42,557 | INFO     | sum of square deviations: 426376116913.55457
[2025-11-27 19:04:51] 2025-11-28 00:03:42,581 | INFO     | sum of deviations: 2779538121342.3687
[2025-11-27 19:04:51] 2025-11-28 00:03:42,582 | INFO     | mean x: 1764254270.6654677
[2025-11-27 19:04:51] 2025-11-28 00:03:42,582 | INFO     | mean y: 3071940.525179856
[2025-11-27 19:04:51] 2025-11-28 00:03:42,582 | INFO     | intersect: -11498069438.014948
[2025-11-27 19:04:51] 2025-11-28 00:03:42,583 | INFO     | chi2: 4.578403838118856
[2025-11-27 19:04:51] 2025-11-28 00:03:42,584 | INFO     | current chi2=4.578403838118856 (change=44.50303170095248 %)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,585 | INFO     | sum of square deviations: 420650340554.08264
[2025-11-27 19:04:51] 2025-11-28 00:03:42,606 | INFO     | sum of deviations: 2580835215464.642
[2025-11-27 19:04:51] 2025-11-28 00:03:42,606 | INFO     | mean x: 1764254423.1671183
[2025-11-27 19:04:51] 2025-11-28 00:03:42,607 | INFO     | mean y: 3077227.0505871726
[2025-11-27 19:04:51] 2025-11-28 00:03:42,607 | INFO     | intersect: -10821233382.923946
[2025-11-27 19:04:51] 2025-11-28 00:03:42,607 | INFO     | chi2: 3.8366544947488936
[2025-11-27 19:04:51] 2025-11-28 00:03:42,607 | INFO     | current chi2=3.8366544947488936 (change=16.201046687806535 %)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,607 | INFO     | left removable region: 20
[2025-11-27 19:04:51] 2025-11-28 00:03:42,608 | INFO     | sum of square deviations: 397163309778.4255
[2025-11-27 19:04:51] 2025-11-28 00:03:42,629 | INFO     | sum of deviations: 2920634157127.577
[2025-11-27 19:04:51] 2025-11-28 00:03:42,629 | INFO     | mean x: 1764254392.689687
[2025-11-27 19:04:51] 2025-11-28 00:03:42,629 | INFO     | mean y: 3097110.2569060773
[2025-11-27 19:04:51] 2025-11-28 00:03:42,629 | INFO     | intersect: -12970764055.384367
[2025-11-27 19:04:51] 2025-11-28 00:03:42,631 | INFO     | chi2: 0.21453242762703048
[2025-11-27 19:04:51] 2025-11-28 00:03:42,631 | INFO     | current memory leak: 7.35 B/s (using 1086 data points, chi2=0.21)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,632 | INFO     | could have reported an average CPU frequency of 2557 MHz (41 samples)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,632 | INFO     | ..............................
[2025-11-27 19:04:51] 2025-11-28 00:03:42,632 | INFO     | . Timing measurements:
[2025-11-27 19:04:51] 2025-11-28 00:03:42,632 | INFO     | . get job = 0 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | . initial setup = 4 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | . payload setup = 42 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | . stage-in = 0 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | . payload execution = 68158 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | . stage-out = 3 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | . log creation = 0 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,633 | INFO     | ..............................
[2025-11-27 19:04:51] 2025-11-28 00:03:42,747 | INFO     | 
[2025-11-27 19:04:51] 2025-11-28 00:03:42,747 | INFO     | job summary report
[2025-11-27 19:04:51] 2025-11-28 00:03:42,747 | INFO     | --------------------------------------------------
[2025-11-27 19:04:51] 2025-11-28 00:03:42,747 | INFO     | PanDA job id: 6898176687
[2025-11-27 19:04:51] 2025-11-28 00:03:42,747 | INFO     | task id: 47556173
[2025-11-27 19:04:51] 2025-11-28 00:03:42,747 | INFO     | errors: (none)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | pilot state: finished 
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | transexitcode: 0
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | exeerrorcode: 0
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | exeerrordiag: 
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | exitcode: 0
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | exitmsg: OK
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | cpuconsumptiontime: 267030 s
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | nevents: 1000
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | neventsw: 0
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | pid: 3467899
[2025-11-27 19:04:51] 2025-11-28 00:03:42,748 | INFO     | pgrp: 3467899
[2025-11-27 19:04:51] 2025-11-28 00:03:42,750 | INFO     | corecount: 9
[2025-11-27 19:04:51] 2025-11-28 00:03:42,750 | INFO     | event service: False
[2025-11-27 19:04:51] 2025-11-28 00:03:42,750 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 30: 2284666, 35: 2284822, 68205: 2340177, 68208: 2349171, 68210: 2349227, 68217: 2349569}
[2025-11-27 19:04:51] 2025-11-28 00:03:42,750 | INFO     | --------------------------------------------------
[2025-11-27 19:04:51] 2025-11-28 00:03:42,750 | INFO     | 
[2025-11-27 19:04:51] 2025-11-28 00:03:42,750 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 19:04:51] 2025-11-28 00:03:42,770 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | job 6898176687 has completed (purged errors)
[2025-11-27 19:04:51] 2025-11-28 00:03:42,772 | INFO     | overall cleanup function is called
[2025-11-27 19:04:51] 2025-11-28 00:03:43,788 | INFO     | --- collectZombieJob: --- 10, [3467899]
[2025-11-27 19:04:51] 2025-11-28 00:03:43,788 | INFO     | zombie collector waiting for pid 3467899
[2025-11-27 19:04:51] 2025-11-28 00:03:43,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:04:51] 2025-11-28 00:03:43,789 | INFO     | collected zombie processes
[2025-11-27 19:04:51] 2025-11-28 00:03:43,789 | INFO     | will attempt to kill all subprocesses of pid=3467899
[2025-11-27 19:04:51] 2025-11-28 00:03:44,306 | INFO     | process IDs to be killed: [3467899] (in reverse order)
[2025-11-27 19:04:51] 2025-11-28 00:03:44,480 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:04:51] 2025-11-28 00:03:44,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:04:51] 2025-11-28 00:03:44,502 | INFO     | did not find any defunct processes belonging to 3467899
[2025-11-27 19:04:51] 2025-11-28 00:03:44,524 | INFO     | did not find any defunct processes belonging to 3467899
[2025-11-27 19:04:51] 2025-11-28 00:03:44,525 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:04:51] 2025-11-28 00:03:44,525 | INFO     | ready for new job
[2025-11-27 19:04:51] 2025-11-28 00:03:44,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:04:51] 2025-11-28 00:03:44,530 | INFO     | ***************************************
[2025-11-27 19:04:51] 2025-11-28 00:03:44,530 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:04:51] 2025-11-28 00:03:44,530 | INFO     | ***************************************
[2025-11-27 19:04:51] 2025-11-28 00:03:44,530 | INFO     | 
[2025-11-27 19:04:51] 2025-11-28 00:03:44,535 | INFO     | architecture information:
[2025-11-27 19:04:51] 2025-11-28 00:03:44,536 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:04:51] 2025-11-28 00:03:44,557 | INFO     | cat /etc/os-release:
[2025-11-27 19:04:51] NAME="CentOS Linux"
[2025-11-27 19:04:51] VERSION="7 (Core)"
[2025-11-27 19:04:51] ID="centos"
[2025-11-27 19:04:51] ID_LIKE="rhel fedora"
[2025-11-27 19:04:51] VERSION_ID="7"
[2025-11-27 19:04:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:04:51] ANSI_COLOR="0;31"
[2025-11-27 19:04:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:04:51] HOME_URL="https://www.centos.org/"
[2025-11-27 19:04:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:04:51] 
[2025-11-27 19:04:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:04:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:04:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:04:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:04:51] 
[2025-11-27 19:04:51] 2025-11-28 00:03:44,558 | INFO     | ***************************************
[2025-11-27 19:04:51] 2025-11-28 00:03:45,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 19:04:51] 2025-11-28 00:03:45,086 | INFO     | sufficient remaining disk space (67773661184 B)
[2025-11-27 19:04:51] 2025-11-28 00:03:45,087 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:04:51] 2025-11-28 00:03:45,087 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:04:51] 2025-11-28 00:03:45,087 | INFO     | update_server=False
[2025-11-27 19:04:51] 2025-11-28 00:03:45,087 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:04:51] 2025-11-28 00:03:45,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:04:51] 2025-11-28 00:03:45,088 | INFO     | aborting loop
[2025-11-27 19:04:51] 2025-11-28 00:03:45,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:04:51] 2025-11-28 00:03:45,327 | INFO     | all data control threads have been joined
[2025-11-27 19:04:51] 2025-11-28 00:03:45,625 | INFO     | all job control threads have been joined
[2025-11-27 19:04:51] 2025-11-28 00:03:45,657 | INFO     | all payload control threads have been joined
[2025-11-27 19:04:51] 2025-11-28 00:03:46,093 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,094 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:04:51] 2025-11-28 00:03:46,179 | INFO     | [job] validate thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,288 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,332 | INFO     | [data] control thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,555 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,564 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,630 | INFO     | [job] control thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,663 | INFO     | [payload] control thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,766 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:46,995 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:47,101 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:47,253 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:47,648 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:47,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:04:51] 2025-11-28 00:03:48,758 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:03:50,188 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:04:51] 2025-11-28 00:04:15,049 | INFO     | PID=3425657 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:04:51] 2025-11-28 00:04:15,049 | INFO     | .. there are 50 such processes running
[2025-11-27 19:04:51] 2025-11-28 00:04:15,049 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:04:51] 2025-11-28 00:04:15,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:04:51] 2025-11-28 00:04:15,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:04:51] 2025-11-28 00:04:44,251 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:04:51] 2025-11-28 00:04:45,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245302925120)>', '<ExcThread(monitor, started 140244808611584)>']
[2025-11-27 19:04:51] 2025-11-28 00:04:46,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:04:51] 2025-11-28 00:04:46,236 | INFO     | [monitor] control thread has ended
[2025-11-27 19:04:51] 2025-11-28 00:04:50,353 | INFO     | all workflow threads have been joined
[2025-11-27 19:04:51] 2025-11-28 00:04:50,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:04:51] 2025-11-28 00:04:50,354 | INFO     | traces error code: 0
[2025-11-27 19:04:51] 2025-11-28 00:04:50,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:04:51] 2025-11-28 00:04:50,543 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:04:51] 2025-11-28 00:04:50,546 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:04:51] 2025-11-28 00:04:50,548 [wrapper] pilotpid: 3425657
[2025-11-27 19:04:51] 2025-11-28 00:04:50,550 [wrapper] Pilot exit status: 0
[2025-11-27 19:04:51] 2025-11-28 00:04:50,601 [wrapper] pandaids: 6898176687
[2025-11-27 19:04:51] 2025-11-28 00:04:50,707 [wrapper] cleanup supervisor_pilot  193892 3425658
[2025-11-27 19:04:51] 2025-11-28 00:04:50,709 [wrapper] Test setup, not cleaning
[2025-11-27 19:04:51] 2025-11-28 00:04:50,712 [wrapper] apfmon messages muted
[2025-11-27 19:04:51] 2025-11-28 00:04:50,729 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:04:51] 2025-11-28 00:04:50,753 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:04:51]  *** Error codes and diagnostics ***
[2025-11-27 19:04:51]     "exeErrorCode": 0,
[2025-11-27 19:04:51]     "exeErrorDiag": "",
[2025-11-27 19:04:51]     "pilotErrorCode": 0,
[2025-11-27 19:04:51]     "pilotErrorDiag": "",
[2025-11-27 19:04:51]  *** Listing of results directory ***
[2025-11-27 19:04:51] total 1327548
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 19:04:51] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:04:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 19:04:51] -rw-r--r--. 2 boincer umatlas 412277866 Nov 27 00:04 EVNT.47483658._003170.pool.root.1
[2025-11-27 19:04:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 19:04:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 19:04:51] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:04 input.tar.gz
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:04 pandaJob.out
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 19:04:51] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:48 boinc_task_state.xml
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas 922217887 Nov 27 19:02 HITS.47556173._001265.pool.root.1
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas      1071 Nov 27 19:03 memory_monitor_summary.json
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas   2323648 Nov 27 19:03 log.47556173._001265.job.log.tgz.1
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas      6877 Nov 27 19:03 init_data.xml
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas        95 Nov 27 19:03 pilot_heartbeat.json
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas      8620 Nov 27 19:03 heartbeat.json
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:04 boinc_mmap_file
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas      4824 Nov 27 19:04 pilotlog.txt
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:04 wrapper_checkpoint.txt
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas   8168366 Nov 27 19:04 log.47556173._001265.job.log.1
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas       353 Nov 27 19:04 output.list
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:04 runtime_log
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas  10516480 Nov 27 19:04 result.tar.gz
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas       661 Nov 27 19:04 tjWMDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxvMKDm2lsGQo.diag
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 19:04 runtime_log.err
[2025-11-27 19:04:51] -rw-r--r--. 1 boincer umatlas     21467 Nov 27 19:04 stderr.txt
[2025-11-27 19:04:51] HITS file was successfully produced:
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas 922217887 Nov 27 19:02 shared/HITS.pool.root.1
[2025-11-27 19:04:51]  *** Contents of shared directory: ***
[2025-11-27 19:04:51] total 1314096
[2025-11-27 19:04:51] -rw-r--r--. 2 boincer umatlas 412277866 Nov 27 00:04 ATLAS.root_0
[2025-11-27 19:04:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 19:04:51] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:04 input.tar.gz
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas 922217887 Nov 27 19:02 HITS.pool.root.1
[2025-11-27 19:04:51] -rw-------. 1 boincer umatlas  10516480 Nov 27 19:04 result.tar.gz
19:04:52 (3409186): run_atlas exited; CPU time 269958.509426
19:04:52 (3409186): called boinc_finish(0)

</stderr_txt>
]]>

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