Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:44 (3124822): wrapper (7.7.26015): starting
00:04:44 (3124822): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:04:44] Arguments: --nthreads 9
[2025-11-27 00:04:44] Threads: 9
[2025-11-27 00:04:44] Checking for CVMFS
[2025-11-27 00:04:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:46] 2.13.3.0 12004 31000 382364 153347 0 533 29980774 32935936 40408 16776704 0 164100427 99.518 191226621 33060 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:04:46] CVMFS is ok
[2025-11-27 00:04:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:46] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:46] Checking for apptainer binary...
[2025-11-27 00:04:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:46] Running /usr/bin/apptainer --version
[2025-11-27 00:04:46] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:47] c6-12-29-4.aglt2.org
[2025-11-27 00:04:47] apptainer works
[2025-11-27 00:04:47] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:04:47] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:04:47] Starting ATLAS job with PandaID=6898177491
[2025-11-27 00:04:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:20:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:20:26] 2025-11-28 04:07:14,777 | INFO     | time since job start (82890s) is within the limit (172800.0s)
[2025-11-27 23:20:26] 2025-11-28 04:07:15,219 | INFO     | monitor loop #4329: job 0:6898177491 is in state 'finished'
[2025-11-27 23:20:26] 2025-11-28 04:07:15,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:20:26] 2025-11-28 04:07:17,766 | INFO     | monitor loop #4330: job 0:6898177491 is in state 'finished'
[2025-11-27 23:20:26] 2025-11-28 04:07:17,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:20:26] 2025-11-28 04:07:18,404 | INFO     | PID=3138531 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:20:26] 2025-11-28 04:07:18,404 | INFO     | .. there are 61 such processes running
[2025-11-27 23:20:26] 2025-11-28 04:07:19,404 | INFO     | time since job start (82895s) is within the limit (172800.0s)
[2025-11-27 23:20:26] 2025-11-28 04:07:20,273 | INFO     | monitor loop #4331: job 0:6898177491 is in state 'finished'
[2025-11-27 23:20:26] 2025-11-28 04:07:20,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:20:26] 2025-11-28 04:07:21,423 | INFO     | time since job start (82897s) is within the limit (172800.0s)
[2025-11-27 23:20:26] 2025-11-28 04:07:22,783 | INFO     | monitor loop #4332: job 0:6898177491 is in state 'finished'
[2025-11-27 23:20:26] 2025-11-28 04:07:22,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:20:26] 2025-11-28 04:07:23,441 | INFO     | time since job start (82899s) is within the limit (172800.0s)
[2025-11-27 23:20:26] 2025-11-28 04:07:25,299 | INFO     | monitor loop #4333: job 0:6898177491 is in state 'finished'
[2025-11-27 23:20:26] 2025-11-28 04:07:25,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:20:26] 2025-11-28 04:07:25,339 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:20:26] 2025-11-28 04:07:25,389 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2659.39040625
[2025-11-27 23:20:26] 2025-11-28 04:07:25,446 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6898177491/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:20:26] 2025-11-28 04:07:25,447 | INFO     | extracted standard info from prmon json
[2025-11-27 23:20:26] 2025-11-28 04:07:25,447 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:20:26] 2025-11-28 04:07:25,447 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:20:26] 2025-11-28 04:07:25,487 | INFO     | time since job start (82901s) is within the limit (172800.0s)
[2025-11-27 23:20:26] 2025-11-28 04:07:25,587 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:20:26] 2025-11-28 04:07:25,598 | INFO     | sum of square deviations: 774830230126.2655
[2025-11-27 23:20:26] 2025-11-28 04:07:25,877 | INFO     | sum of deviations: 4344964287990.768
[2025-11-27 23:20:26] 2025-11-28 04:07:25,878 | INFO     | mean x: 1764261402.229919
[2025-11-27 23:20:26] 2025-11-28 04:07:25,878 | INFO     | mean y: 2990782.2026529107
[2025-11-27 23:20:26] 2025-11-28 04:07:25,878 | INFO     | intersect: -9890341317.29523
[2025-11-27 23:20:26] 2025-11-28 04:07:25,880 | INFO     | chi2: 26.995809180616394
[2025-11-27 23:20:26] 2025-11-28 04:07:25,907 | INFO     | sum of square deviations: 766298048748.911
[2025-11-27 23:20:26] 2025-11-28 04:07:26,205 | INFO     | sum of deviations: 4831453120669.548
[2025-11-27 23:20:26] 2025-11-28 04:07:26,205 | INFO     | mean x: 1764261249.741864
[2025-11-27 23:20:26] 2025-11-28 04:07:26,205 | INFO     | mean y: 2999474.7551775146
[2025-11-27 23:20:26] 2025-11-28 04:07:26,205 | INFO     | intersect: -11120538598.528736
[2025-11-27 23:20:26] 2025-11-28 04:07:26,207 | INFO     | chi2: 23.460229281219643
[2025-11-27 23:20:26] 2025-11-28 04:07:26,207 | INFO     | current chi2=23.460229281219643 (change=13.096773190763914 %)
[2025-11-27 23:20:26] 2025-11-28 04:07:26,250 | INFO     | right removable region: 1351
[2025-11-27 23:20:26] 2025-11-28 04:07:26,252 | INFO     | sum of square deviations: 766295375118.9106
[2025-11-27 23:20:26] 2025-11-28 04:07:26,639 | INFO     | sum of deviations: 3779444785711.4507
[2025-11-27 23:20:26] 2025-11-28 04:07:26,639 | INFO     | mean x: 1764261554.741864
[2025-11-27 23:20:26] 2025-11-28 04:07:26,639 | INFO     | mean y: 3000886.926775148
[2025-11-27 23:20:26] 2025-11-28 04:07:26,640 | INFO     | intersect: -8698512067.74245
[2025-11-27 23:20:26] 2025-11-28 04:07:26,651 | INFO     | chi2: 22.89080456113113
[2025-11-27 23:20:26] 2025-11-28 04:07:26,652 | INFO     | current chi2=22.89080456113113 (change=15.20608103287658 %)
[2025-11-27 23:20:26] 2025-11-28 04:07:26,652 | INFO     | left removable region: 10
[2025-11-27 23:20:26] 2025-11-28 04:07:26,654 | INFO     | sum of square deviations: 747742929857.3539
[2025-11-27 23:20:26] 2025-11-28 04:07:26,778 | INFO     | sum of deviations: 3877538502390.479
[2025-11-27 23:20:26] 2025-11-28 04:07:26,778 | INFO     | mean x: 1764261524.2684565
[2025-11-27 23:20:26] 2025-11-28 04:07:26,779 | INFO     | mean y: 3019860.1319910516
[2025-11-27 23:20:26] 2025-11-28 04:07:26,779 | INFO     | intersect: -9145835602.723543
[2025-11-27 23:20:26] 2025-11-28 04:07:26,780 | INFO     | chi2: 15.957869698989413
[2025-11-27 23:20:26] 2025-11-28 04:07:26,781 | INFO     | current memory leak: 5.19 B/s (using 1341 data points, chi2=15.96)
[2025-11-27 23:20:26] 2025-11-28 04:07:26,802 | INFO     | could have reported an average CPU frequency of 2666 MHz (48 samples)
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | ..............................
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . Timing measurements:
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . get job = 0 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . initial setup = 5 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . payload setup = 33 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . stage-in = 0 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . payload execution = 82773 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . stage-out = 10 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | . log creation = 3 s
[2025-11-27 23:20:26] 2025-11-28 04:07:26,803 | INFO     | ..............................
[2025-11-27 23:20:26] 2025-11-28 04:07:27,092 | INFO     | 
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | job summary report
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | --------------------------------------------------
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | PanDA job id: 6898177491
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | task id: 47556161
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | errors: (none)
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | pilot state: finished 
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | transexitcode: 0
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | exeerrorcode: 0
[2025-11-27 23:20:26] 2025-11-28 04:07:27,093 | INFO     | exeerrordiag: 
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | exitcode: 0
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | exitmsg: OK
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | cpuconsumptiontime: 254952 s
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | nevents: 1000
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | neventsw: 0
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | pid: 3187834
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | pgrp: 3187834
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | corecount: 9
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | event service: False
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284610, 82811: 2346994, 82823: 2355988, 82824: 2356172, 82857: 2356418}
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | --------------------------------------------------
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | 
[2025-11-27 23:20:26] 2025-11-28 04:07:27,094 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 23:20:26] 2025-11-28 04:07:27,255 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,255 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,255 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,255 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | job 6898177491 has completed (purged errors)
[2025-11-27 23:20:26] 2025-11-28 04:07:27,265 | INFO     | overall cleanup function is called
[2025-11-27 23:20:26] 2025-11-28 04:07:28,351 | INFO     | --- collectZombieJob: --- 10, [3187834]
[2025-11-27 23:20:26] 2025-11-28 04:07:28,351 | INFO     | zombie collector waiting for pid 3187834
[2025-11-27 23:20:26] 2025-11-28 04:07:28,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:20:26] 2025-11-28 04:07:28,352 | INFO     | collected zombie processes
[2025-11-27 23:20:26] 2025-11-28 04:07:28,352 | INFO     | will attempt to kill all subprocesses of pid=3187834
[2025-11-27 23:20:26] 2025-11-28 04:07:29,873 | INFO     | process IDs to be killed: [3187834] (in reverse order)
[2025-11-27 23:20:26] 2025-11-28 04:07:30,429 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:20:26] 2025-11-28 04:07:30,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:20:26] 2025-11-28 04:07:30,484 | INFO     | did not find any defunct processes belonging to 3187834
[2025-11-27 23:20:26] 2025-11-28 04:07:30,512 | INFO     | did not find any defunct processes belonging to 3187834
[2025-11-27 23:20:26] 2025-11-28 04:07:30,514 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:20:26] 2025-11-28 04:07:30,514 | INFO     | ready for new job
[2025-11-27 23:20:26] 2025-11-28 04:07:30,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:20:26] 2025-11-28 04:07:30,520 | INFO     | ***************************************
[2025-11-27 23:20:26] 2025-11-28 04:07:30,520 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:20:26] 2025-11-28 04:07:30,520 | INFO     | ***************************************
[2025-11-27 23:20:26] 2025-11-28 04:07:30,520 | INFO     | 
[2025-11-27 23:20:26] 2025-11-28 04:07:30,527 | INFO     | architecture information:
[2025-11-27 23:20:26] 2025-11-28 04:07:30,541 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:20:26] 2025-11-28 04:07:30,742 | INFO     | cat /etc/os-release:
[2025-11-27 23:20:26] NAME="CentOS Linux"
[2025-11-27 23:20:26] VERSION="7 (Core)"
[2025-11-27 23:20:26] ID="centos"
[2025-11-27 23:20:26] ID_LIKE="rhel fedora"
[2025-11-27 23:20:26] VERSION_ID="7"
[2025-11-27 23:20:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:20:26] ANSI_COLOR="0;31"
[2025-11-27 23:20:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:20:26] HOME_URL="https://www.centos.org/"
[2025-11-27 23:20:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:20:26] 
[2025-11-27 23:20:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:20:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:20:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:20:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:20:26] 
[2025-11-27 23:20:26] 2025-11-28 04:07:30,742 | INFO     | ***************************************
[2025-11-27 23:20:26] 2025-11-28 04:07:31,245 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 23:20:26] 2025-11-28 04:07:31,362 | INFO     | sufficient remaining disk space (86391128064 B)
[2025-11-27 23:20:26] 2025-11-28 04:07:31,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:20:26] 2025-11-28 04:07:31,362 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:20:26] 2025-11-28 04:07:31,362 | INFO     | update_server=False
[2025-11-27 23:20:26] 2025-11-28 04:07:31,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:20:26] 2025-11-28 04:07:31,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:20:26] 2025-11-28 04:07:31,418 | INFO     | aborting loop
[2025-11-27 23:20:26] 2025-11-28 04:07:31,491 | INFO     | all job control threads have been joined
[2025-11-27 23:20:26] 2025-11-28 04:07:31,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:20:26] 2025-11-28 04:07:31,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:20:26] 2025-11-28 04:07:31,792 | INFO     | all payload control threads have been joined
[2025-11-27 23:20:26] 2025-11-28 04:07:32,033 | INFO     | all data control threads have been joined
[2025-11-27 23:20:26] 2025-11-28 04:07:32,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:20:26] 2025-11-28 04:07:32,381 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:32,423 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:32,497 | INFO     | [job] control thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:32,791 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:32,809 | INFO     | [payload] control thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:32,818 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,038 | INFO     | [data] control thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,152 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,298 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,299 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,302 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,532 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,687 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:33,691 | INFO     | [job] validate thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:07:35,648 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:20:26] 2025-11-28 04:08:00,978 | INFO     | PID=3138531 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:20:26] 2025-11-28 04:08:00,978 | INFO     | .. there are 61 such processes running
[2025-11-27 23:20:26] 2025-11-28 04:08:00,978 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:20:26] 2025-11-28 04:08:00,978 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:20:26] 2025-11-28 04:08:00,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:20:26] 2025-11-28 04:08:18,172 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:20:26] 2025-11-28 04:08:18,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663301654336)>', '<ExcThread(monitor, started 140662578075392)>']
[2025-11-27 23:20:26] 2025-11-28 04:08:19,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:20:26] 2025-11-28 04:08:19,094 | INFO     | [monitor] control thread has ended
[2025-11-27 23:20:26] 2025-11-28 04:08:23,363 | INFO     | all workflow threads have been joined
[2025-11-27 23:20:26] 2025-11-28 04:08:23,364 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:20:26] 2025-11-28 04:08:23,364 | INFO     | traces error code: 0
[2025-11-27 23:20:26] 2025-11-28 04:08:23,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:20:26] 2025-11-28 04:08:23,762 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:20:26] 2025-11-28 04:08:23,778 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:20:26] 2025-11-28 04:08:23,795 [wrapper] pilotpid: 3138531
[2025-11-27 23:20:26] 2025-11-28 04:08:23,814 [wrapper] Pilot exit status: 0
[2025-11-27 23:20:26] 2025-11-28 04:08:23,895 [wrapper] pandaids: 6898177491
[2025-11-27 23:20:26] 2025-11-28 04:08:24,242 [wrapper] cleanup supervisor_pilot 1854196 3138532
[2025-11-27 23:20:26] 2025-11-28 04:08:24,252 [wrapper] Test setup, not cleaning
[2025-11-27 23:20:26] 2025-11-28 04:08:24,291 [wrapper] apfmon messages muted
[2025-11-27 23:20:26] 2025-11-28 04:08:24,330 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:20:26] 2025-11-28 04:08:24,342 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:20:26]  *** Error codes and diagnostics ***
[2025-11-27 23:20:26]     "exeErrorCode": 0,
[2025-11-27 23:20:26]     "exeErrorDiag": "",
[2025-11-27 23:20:26]     "pilotErrorCode": 0,
[2025-11-27 23:20:26]     "pilotErrorDiag": "",
[2025-11-27 23:20:26]  *** Listing of results directory ***
[2025-11-27 23:20:27] total 1316884
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 23:20:27] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:20:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 23:20:27] -rw-r--r--. 2 boincer umatlas 410578874 Nov 27 00:04 EVNT.47483658._002468.pool.root.1
[2025-11-27 23:20:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 23:20:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 23:20:27] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:04 input.tar.gz
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:04 pandaJob.out
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 23:20:27] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:27 boinc_task_state.xml
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas 909622237 Nov 27 23:04 HITS.47556161._004503.pool.root.1
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas      1059 Nov 27 23:06 memory_monitor_summary.json
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas   2485079 Nov 27 23:06 log.47556161._004503.job.log.tgz.1
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas        95 Nov 27 23:07 pilot_heartbeat.json
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas      8630 Nov 27 23:07 heartbeat.json
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas      4824 Nov 27 23:08 pilotlog.txt
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas   9699022 Nov 27 23:08 log.47556161._004503.job.log.1
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas       353 Nov 27 23:08 output.list
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:08 runtime_log
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas  12206080 Nov 27 23:08 result.tar.gz
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 23:08 runtime_log.err
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas       662 Nov 27 23:08 8YoKDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvuMKDmdy2Nbm.diag
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:20 wrapper_checkpoint.txt
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 23:20 init_data.xml
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:20 boinc_mmap_file
[2025-11-27 23:20:27] -rw-r--r--. 1 boincer umatlas     21849 Nov 27 23:20 stderr.txt
[2025-11-27 23:20:27] HITS file was successfully produced:
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas 909622237 Nov 27 23:04 shared/HITS.pool.root.1
[2025-11-27 23:20:27]  *** Contents of shared directory: ***
[2025-11-27 23:20:27] total 1301784
[2025-11-27 23:20:27] -rw-r--r--. 2 boincer umatlas 410578874 Nov 27 00:04 ATLAS.root_0
[2025-11-27 23:20:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 23:20:27] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:04 input.tar.gz
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas 909622237 Nov 27 23:04 HITS.pool.root.1
[2025-11-27 23:20:27] -rw-------. 1 boincer umatlas  12206080 Nov 27 23:08 result.tar.gz
23:20:28 (3124822): run_atlas exited; CPU time 258363.917908
23:20:28 (3124822): called boinc_finish(0)

</stderr_txt>
]]>

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