Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:35 (3982410): wrapper (7.7.26015): starting
00:15:35 (3982410): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:15:35] Arguments: --nthreads 8
[2025-11-27 00:15:35] Threads: 8
[2025-11-27 00:15:35] Checking for CVMFS
[2025-11-27 00:15:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:15:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:15:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:15:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:15:37] 2.13.2.0 3557600 23855 211668 153348 1 349 39000985 40960000 44629 16776704 0 237193896 99.664 211984381 48517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:15:37] CVMFS is ok
[2025-11-27 00:15:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:15:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:15:37] Further information can be found at the LHC@home message board.
[2025-11-27 00:15:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:15:37] Checking for apptainer binary...
[2025-11-27 00:15:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:15:37] Running /usr/bin/apptainer --version
[2025-11-27 00:15:37] apptainer version 1.4.4-1.el9
[2025-11-27 00:15:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:15:38] c-208-40.aglt2.org
[2025-11-27 00:15:38] apptainer works
[2025-11-27 00:15:38] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:15:38] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:15:39] Starting ATLAS job with PandaID=6896255094
[2025-11-27 00:15:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:12 (3982410): BOINC client no longer exists - exiting
00:20:12 (3982410): timer handler: client dead, exiting
00:21:34 (4056477): wrapper (7.7.26015): starting
00:21:34 (4056477): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:21:34] Arguments: --nthreads 8
[2025-11-27 00:21:34] Threads: 8
[2025-11-27 00:21:34] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:21:34] Checking for CVMFS
[2025-11-27 00:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:21:35] 2.13.2.0 3557600 23861 215404 153349 3 180 39029553 40960001 32191 16776704 0 237371418 99.664 211986254 48517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:21:35] CVMFS is ok
[2025-11-27 00:21:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:21:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:21:35] Further information can be found at the LHC@home message board.
[2025-11-27 00:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:21:35] Checking for apptainer binary...
[2025-11-27 00:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:21:35] Running /usr/bin/apptainer --version
[2025-11-27 00:21:35] apptainer version 1.4.4-1.el9
[2025-11-27 00:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:21:35] c-208-40.aglt2.org
[2025-11-27 00:21:35] apptainer works
[2025-11-27 00:21:35] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:21:35] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:21:35] Starting ATLAS job with PandaID=6896255094
[2025-11-27 00:21:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:48:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:48:35] 2025-11-27 13:38:18,671 | INFO     | time since job start (29791s) is within the limit (172800.0s)
[2025-11-27 20:48:35] 2025-11-27 13:38:19,377 | INFO     | monitor loop #1779: job 0:6896255094 is in state 'finished'
[2025-11-27 20:48:35] 2025-11-27 13:38:19,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:48:35] 2025-11-27 13:38:19,957 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:48:35] 2025-11-27 13:38:19,963 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.8726015625007
[2025-11-27 20:48:35] 2025-11-27 13:38:19,976 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6896255094/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:48:35] 2025-11-27 13:38:19,977 | INFO     | extracted standard info from prmon json
[2025-11-27 20:48:35] 2025-11-27 13:38:19,977 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:48:35] 2025-11-27 13:38:19,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:48:35] 2025-11-27 13:38:19,982 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:48:35] 2025-11-27 13:38:19,983 | INFO     | sum of square deviations: 36037949983.10664
[2025-11-27 20:48:35] 2025-11-27 13:38:19,986 | INFO     | sum of deviations: 262084220272.3526
[2025-11-27 20:48:35] 2025-11-27 13:38:19,986 | INFO     | mean x: 1764235796.1188524
[2025-11-27 20:48:35] 2025-11-27 13:38:19,986 | INFO     | mean y: 2860586.700819672
[2025-11-27 20:48:35] 2025-11-27 13:38:19,986 | INFO     | intersect: -12827457542.358402
[2025-11-27 20:48:35] 2025-11-27 13:38:19,986 | INFO     | chi2: 6.425322124114258
[2025-11-27 20:48:35] 2025-11-27 13:38:19,987 | INFO     | sum of square deviations: 34942281905.33326
[2025-11-27 20:48:35] 2025-11-27 13:38:19,990 | INFO     | sum of deviations: 439854435205.66614
[2025-11-27 20:48:35] 2025-11-27 13:38:19,990 | INFO     | mean x: 1764235643.6666667
[2025-11-27 20:48:35] 2025-11-27 13:38:19,990 | INFO     | mean y: 2885336.0414078673
[2025-11-27 20:48:35] 2025-11-27 13:38:19,990 | INFO     | intersect: -22205362960.881184
[2025-11-27 20:48:35] 2025-11-27 13:38:19,991 | INFO     | chi2: 2.701959378365059
[2025-11-27 20:48:35] 2025-11-27 13:38:19,991 | INFO     | current chi2=2.701959378365059 (change=57.9482658429747 %)
[2025-11-27 20:48:35] 2025-11-27 13:38:19,991 | INFO     | sum of square deviations: 33868962030.495903
[2025-11-27 20:48:35] 2025-11-27 13:38:19,994 | INFO     | sum of deviations: 499808637807.89355
[2025-11-27 20:48:35] 2025-11-27 13:38:19,994 | INFO     | mean x: 1764235491.207113
[2025-11-27 20:48:35] 2025-11-27 13:38:19,994 | INFO     | mean y: 2893837.031380753
[2025-11-27 20:48:35] 2025-11-27 13:38:19,994 | INFO     | intersect: -26032156686.17641
[2025-11-27 20:48:35] 2025-11-27 13:38:19,995 | INFO     | chi2: 2.132358874158701
[2025-11-27 20:48:35] 2025-11-27 13:38:19,995 | INFO     | current chi2=2.132358874158701 (change=21.081016567725754 %)
[2025-11-27 20:48:35] 2025-11-27 13:38:19,995 | INFO     | right removable region: 477
[2025-11-27 20:48:35] 2025-11-27 13:38:19,995 | INFO     | sum of square deviations: 34941143303.86757
[2025-11-27 20:48:35] 2025-11-27 13:38:19,998 | INFO     | sum of deviations: 146173645138.93137
[2025-11-27 20:48:35] 2025-11-27 13:38:19,998 | INFO     | mean x: 1764235948.6501036
[2025-11-27 20:48:35] 2025-11-27 13:38:19,998 | INFO     | mean y: 2876653.366459627
[2025-11-27 20:48:35] 2025-11-27 13:38:19,999 | INFO     | intersect: -7377671752.179887
[2025-11-27 20:48:35] 2025-11-27 13:38:19,999 | INFO     | chi2: 4.5518141118778
[2025-11-27 20:48:35] 2025-11-27 13:38:19,999 | INFO     | current chi2=4.5518141118778 (change=29.15819590126347 %)
[2025-11-27 20:48:35] 2025-11-27 13:38:19,999 | INFO     | sum of square deviations: 33866863061.88503
[2025-11-27 20:48:35] 2025-11-27 13:38:20,002 | INFO     | sum of deviations: 111073491583.43921
[2025-11-27 20:48:35] 2025-11-27 13:38:20,002 | INFO     | mean x: 1764236101.1778243
[2025-11-27 20:48:35] 2025-11-27 13:38:20,002 | INFO     | mean y: 2881633.230125523
[2025-11-27 20:48:35] 2025-11-27 13:38:20,002 | INFO     | intersect: -5783301261.161262
[2025-11-27 20:48:35] 2025-11-27 13:38:20,003 | INFO     | chi2: 4.459971933179423
[2025-11-27 20:48:35] 2025-11-27 13:38:20,003 | INFO     | current chi2=4.459971933179423 (change=2.017704951059354 %)
[2025-11-27 20:48:35] 2025-11-27 13:38:20,003 | INFO     | left removable region: 20
[2025-11-27 20:48:35] 2025-11-27 13:38:20,003 | INFO     | sum of square deviations: 29597091598.678406
[2025-11-27 20:48:35] 2025-11-27 13:38:20,006 | INFO     | sum of deviations: 298641925628.9429
[2025-11-27 20:48:35] 2025-11-27 13:38:20,006 | INFO     | mean x: 1764236070.7789934
[2025-11-27 20:48:35] 2025-11-27 13:38:20,006 | INFO     | mean y: 2923848.702407002
[2025-11-27 20:48:35] 2025-11-27 13:38:20,006 | INFO     | intersect: -17798651542.07028
[2025-11-27 20:48:35] 2025-11-27 13:38:20,006 | INFO     | chi2: 0.0751552898344461
[2025-11-27 20:48:35] 2025-11-27 13:38:20,006 | INFO     | current memory leak: 10.09 B/s (using 457 data points, chi2=0.08)
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | could have reported an average CPU frequency of 3799 MHz (20 samples)
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | ..............................
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . Timing measurements:
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . get job = 0 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . initial setup = 0 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . payload setup = 6 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . stage-in = 0 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . payload execution = 29752 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . stage-out = 3 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | . log creation = 0 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,007 | INFO     | ..............................
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | 
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | job summary report
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | --------------------------------------------------
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | PanDA job id: 6896255094
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | task id: 47556149
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | errors: (none)
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | pilot state: finished 
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | transexitcode: 0
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | exeerrorcode: 0
[2025-11-27 20:48:35] 2025-11-27 13:38:20,314 | INFO     | exeerrordiag: 
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | exitcode: 0
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | exitmsg: OK
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | cpuconsumptiontime: 134829 s
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | nevents: 1000
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | neventsw: 0
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | pid: 1308
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | pgrp: 1308
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | corecount: 8
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | event service: False
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | sizes: {0: 2284032, 1: 2284287, 6: 2284549, 11: 2284577, 29763: 2323392, 29764: 2323391, 29768: 2332627, 29777: 2332817}
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | --------------------------------------------------
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | 
[2025-11-27 20:48:35] 2025-11-27 13:38:20,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,341 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | job 6896255094 has completed (purged errors)
[2025-11-27 20:48:35] 2025-11-27 13:38:20,344 | INFO     | overall cleanup function is called
[2025-11-27 20:48:35] 2025-11-27 13:38:21,360 | INFO     | --- collectZombieJob: --- 10, [1308]
[2025-11-27 20:48:35] 2025-11-27 13:38:21,360 | INFO     | zombie collector waiting for pid 1308
[2025-11-27 20:48:35] 2025-11-27 13:38:21,360 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:48:35] 2025-11-27 13:38:21,360 | INFO     | collected zombie processes
[2025-11-27 20:48:35] 2025-11-27 13:38:21,360 | INFO     | will attempt to kill all subprocesses of pid=1308
[2025-11-27 20:48:35] 2025-11-27 13:38:21,793 | INFO     | process IDs to be killed: [1308] (in reverse order)
[2025-11-27 20:48:35] 2025-11-27 13:38:21,981 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:48:35] 2025-11-27 13:38:21,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:48:35] 2025-11-27 13:38:22,005 | INFO     | did not find any defunct processes belonging to 1308
[2025-11-27 20:48:35] 2025-11-27 13:38:22,026 | INFO     | did not find any defunct processes belonging to 1308
[2025-11-27 20:48:35] 2025-11-27 13:38:22,027 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:48:35] 2025-11-27 13:38:22,027 | INFO     | ready for new job
[2025-11-27 20:48:35] 2025-11-27 13:38:22,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:48:35] 2025-11-27 13:38:22,030 | INFO     | ***************************************
[2025-11-27 20:48:35] 2025-11-27 13:38:22,030 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:48:35] 2025-11-27 13:38:22,030 | INFO     | ***************************************
[2025-11-27 20:48:35] 2025-11-27 13:38:22,030 | INFO     | 
[2025-11-27 20:48:35] 2025-11-27 13:38:22,034 | INFO     | architecture information:
[2025-11-27 20:48:35] 2025-11-27 13:38:22,035 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:48:35] 2025-11-27 13:38:22,052 | INFO     | cat /etc/os-release:
[2025-11-27 20:48:35] NAME="CentOS Linux"
[2025-11-27 20:48:35] VERSION="7 (Core)"
[2025-11-27 20:48:35] ID="centos"
[2025-11-27 20:48:35] ID_LIKE="rhel fedora"
[2025-11-27 20:48:35] VERSION_ID="7"
[2025-11-27 20:48:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:48:35] ANSI_COLOR="0;31"
[2025-11-27 20:48:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:48:35] HOME_URL="https://www.centos.org/"
[2025-11-27 20:48:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:48:35] 
[2025-11-27 20:48:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:48:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:48:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:48:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:48:35] 
[2025-11-27 20:48:35] 2025-11-27 13:38:22,052 | INFO     | ***************************************
[2025-11-27 20:48:35] 2025-11-27 13:38:22,555 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 20:48:35] 2025-11-27 13:38:22,595 | INFO     | sufficient remaining disk space (153882722304 B)
[2025-11-27 20:48:35] 2025-11-27 13:38:22,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:48:35] 2025-11-27 13:38:22,595 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:48:35] 2025-11-27 13:38:22,596 | INFO     | update_server=False
[2025-11-27 20:48:35] 2025-11-27 13:38:22,596 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:48:35] 2025-11-27 13:38:22,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:48:35] 2025-11-27 13:38:22,713 | INFO     | all payload control threads have been joined
[2025-11-27 20:48:35] 2025-11-27 13:38:22,713 | INFO     | all data control threads have been joined
[2025-11-27 20:48:35] 2025-11-27 13:38:22,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:48:35] 2025-11-27 13:38:22,888 | INFO     | aborting loop
[2025-11-27 20:48:35] 2025-11-27 13:38:23,602 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:23,664 | INFO     | all job control threads have been joined
[2025-11-27 20:48:35] 2025-11-27 13:38:23,718 | INFO     | [payload] control thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:23,719 | INFO     | [data] control thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:23,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:48:35] 2025-11-27 13:38:23,871 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:23,894 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:23,928 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:23,950 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:24,212 | INFO     | [job] validate thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:24,340 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:24,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:24,670 | INFO     | [job] control thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:24,816 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:25,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:48:35] 2025-11-27 13:38:25,192 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:25,785 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:26,081 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:26,603 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:48:35] 2025-11-27 13:38:38,985 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:48:35] 2025-11-27 13:38:39,992 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038487656256)>', '<ExcThread(monitor, started 140037861660416)>']
[2025-11-27 20:48:35] 2025-11-27 13:38:45,018 | INFO     | all workflow threads have been joined
[2025-11-27 20:48:35] 2025-11-27 13:38:45,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:48:35] 2025-11-27 13:38:45,018 | INFO     | traces error code: 0
[2025-11-27 20:48:35] 2025-11-27 13:38:45,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:48:35] 2025-11-27 13:38:52,334 | INFO     | PID=4108456 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:48:35] 2025-11-27 13:38:52,334 | INFO     | .. there are 51 such processes running
[2025-11-27 20:48:35] 2025-11-27 13:38:52,335 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:48:35] 2025-11-27 13:38:52,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:48:35] 2025-11-27 13:38:52,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:48:35] 2025-11-27 13:38:52,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:48:35] 2025-11-27 13:38:52,335 | INFO     | [monitor] control thread has ended
[2025-11-27 20:48:35] 2025-11-27 13:38:52,584 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:48:35] 2025-11-27 13:38:52,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:48:35] 2025-11-27 13:38:52,617 [wrapper] pilotpid: 4108456
[2025-11-27 20:48:35] 2025-11-27 13:38:52,627 [wrapper] Pilot exit status: 0
[2025-11-27 20:48:35] 2025-11-27 13:38:52,713 [wrapper] pandaids: 6896255094 6896255094
[2025-11-27 20:48:35] 2025-11-27 13:38:52,834 [wrapper] cleanup supervisor_pilot 2993816 4108462
[2025-11-27 20:48:35] 2025-11-27 13:38:52,837 [wrapper] Test setup, not cleaning
[2025-11-27 20:48:35] 2025-11-27 13:38:52,839 [wrapper] apfmon messages muted
[2025-11-27 20:48:35] 2025-11-27 13:38:52,842 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:48:35] 2025-11-27 13:38:52,851 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:48:35]  *** Error codes and diagnostics ***
[2025-11-27 20:48:35]     "exeErrorCode": 0,
[2025-11-27 20:48:35]     "exeErrorDiag": "",
[2025-11-27 20:48:35]     "pilotErrorCode": 0,
[2025-11-27 20:48:35]     "pilotErrorDiag": "",
[2025-11-27 20:48:35]  *** Listing of results directory ***
[2025-11-27 20:48:35] total 1720228
[2025-11-27 20:48:35] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 17:04 pilot3.tar.gz
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 17:51 queuedata.json
[2025-11-27 20:48:35] -rwx------. 1 boincer umatlas     36292 Nov 24 17:52 runpilot2-wrapper.sh
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:48:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:15 run_atlas
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:15 job.xml
[2025-11-27 20:48:35] -rw-r--r--. 3 boincer umatlas 411402819 Nov 27 00:15 EVNT.47483658._001441.pool.root.1
[2025-11-27 20:48:35] -rw-r--r--. 3 boincer umatlas 411402819 Nov 27 00:15 ATLAS.root_0
[2025-11-27 20:48:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:15 start_atlas.sh
[2025-11-27 20:48:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:15 shared
[2025-11-27 20:48:35] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:15 input.tar.gz
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:15 boinc_lockfile
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 00:21 pandaJob.out
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas        57 Nov 27 00:21 setup.sh.local
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas    991578 Nov 27 00:21 agis_schedconf.cvmfs.json
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas       530 Nov 27 08:27 boinc_task_state.xml
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas 923699195 Nov 27 08:37 HITS.47556149._004271.pool.root.1
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas      1065 Nov 27 08:38 memory_monitor_summary.json
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas   1742895 Nov 27 08:38 log.47556149._004271.job.log.tgz.1
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas      8609 Nov 27 08:38 heartbeat.json
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas       823 Nov 27 08:38 pilotlog.txt
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas        95 Nov 27 08:38 pilot_heartbeat.json
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas   3794803 Nov 27 08:38 log.47556149._004271.job.log.1
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas       353 Nov 27 08:38 output.list
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:38 runtime_log
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas   5560320 Nov 27 08:38 result.tar.gz
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas      9446 Nov 27 08:38 runtime_log.err
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas       790 Nov 27 08:38 bLoMDmpauh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVyLKDmivYkfm.diag
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 20:47 init_data.xml
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:48 boinc_mmap_file
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas        27 Nov 27 20:48 wrapper_checkpoint.txt
[2025-11-27 20:48:35] -rw-r--r--. 1 boincer umatlas     23602 Nov 27 20:48 stderr.txt
[2025-11-27 20:48:35] HITS file was successfully produced:
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas 923699195 Nov 27 08:37 shared/HITS.pool.root.1
[2025-11-27 20:48:35]  *** Contents of shared directory: ***
[2025-11-27 20:48:35] total 1309852
[2025-11-27 20:48:35] -rw-r--r--. 3 boincer umatlas 411402819 Nov 27 00:15 ATLAS.root_0
[2025-11-27 20:48:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:15 start_atlas.sh
[2025-11-27 20:48:35] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:15 input.tar.gz
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas 923699195 Nov 27 08:37 HITS.pool.root.1
[2025-11-27 20:48:35] -rw-------. 1 boincer umatlas   5560320 Nov 27 08:38 result.tar.gz
20:48:37 (4056477): run_atlas exited; CPU time 135309.990734
20:48:37 (4056477): called boinc_finish(0)

</stderr_txt>
]]>

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