Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:25 (3827277): wrapper (7.7.26015): starting
00:05:25 (3827277): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:05:25] Arguments: --nthreads 8
[2025-11-27 00:05:25] Threads: 8
[2025-11-27 00:05:25] Checking for CVMFS
[2025-11-27 00:05:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:05:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:05:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:05:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:05:28] 2.13.3.0 22787 30996 261000 153347 0 910 35537844 40960000 67703 16776704 0 450477138 99.749 274508717 47815 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:05:28] CVMFS is ok
[2025-11-27 00:05:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:05:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:05:28] Further information can be found at the LHC@home message board.
[2025-11-27 00:05:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:05:28] Checking for apptainer binary...
[2025-11-27 00:05:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:05:28] Running /usr/bin/apptainer --version
[2025-11-27 00:05:28] apptainer version 1.4.4-1.el9
[2025-11-27 00:05:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:05:28] c8-6-11.aglt2.org
[2025-11-27 00:05:28] apptainer works
[2025-11-27 00:05:28] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:05:28] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:05:28] Starting ATLAS job with PandaID=6898177899
[2025-11-27 00:05:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:10:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:10:29] 2025-11-27 16:09:17,005 | INFO     | time since job start (39669s) is within the limit (172800.0s)
[2025-11-27 11:10:29] 2025-11-27 16:09:17,368 | INFO     | monitor loop #2283: job 0:6898177899 is in state 'finished'
[2025-11-27 11:10:29] 2025-11-27 16:09:17,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:10:29] 2025-11-27 16:09:19,012 | INFO     | time since job start (39671s) is within the limit (172800.0s)
[2025-11-27 11:10:29] 2025-11-27 16:09:19,873 | INFO     | monitor loop #2284: job 0:6898177899 is in state 'finished'
[2025-11-27 11:10:29] 2025-11-27 16:09:19,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:10:29] 2025-11-27 16:09:21,019 | INFO     | time since job start (39673s) is within the limit (172800.0s)
[2025-11-27 11:10:29] 2025-11-27 16:09:22,398 | INFO     | monitor loop #2285: job 0:6898177899 is in state 'finished'
[2025-11-27 11:10:29] 2025-11-27 16:09:22,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:10:29] 2025-11-27 16:09:23,815 | INFO     | PID=3890694 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:10:29] 2025-11-27 16:09:23,818 | INFO     | .. there are 88 such processes running
[2025-11-27 11:10:29] 2025-11-27 16:09:24,819 | INFO     | time since job start (39676s) is within the limit (172800.0s)
[2025-11-27 11:10:29] 2025-11-27 16:09:24,911 | INFO     | monitor loop #2286: job 0:6898177899 is in state 'finished'
[2025-11-27 11:10:29] 2025-11-27 16:09:24,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:10:29] 2025-11-27 16:09:26,826 | INFO     | time since job start (39678s) is within the limit (172800.0s)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,416 | INFO     | monitor loop #2287: job 0:6898177899 is in state 'finished'
[2025-11-27 11:10:29] 2025-11-27 16:09:27,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,428 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:10:29] 2025-11-27 16:09:27,454 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1159921875014
[2025-11-27 11:10:29] 2025-11-27 16:09:27,479 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6898177899/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,484 | INFO     | extracted standard info from prmon json
[2025-11-27 11:10:29] 2025-11-27 16:09:27,484 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:10:29] 2025-11-27 16:09:27,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:10:29] 2025-11-27 16:09:27,493 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:10:29] 2025-11-27 16:09:27,494 | INFO     | sum of square deviations: 83598857192.53227
[2025-11-27 11:10:29] 2025-11-27 16:09:27,503 | INFO     | sum of deviations: 544166380264.14716
[2025-11-27 11:10:29] 2025-11-27 16:09:27,503 | INFO     | mean x: 1764240053.4613004
[2025-11-27 11:10:29] 2025-11-27 16:09:27,503 | INFO     | mean y: 2758757.4659442725
[2025-11-27 11:10:29] 2025-11-27 16:09:27,503 | INFO     | intersect: -11481131765.080814
[2025-11-27 11:10:29] 2025-11-27 16:09:27,503 | INFO     | chi2: 26.131154442566054
[2025-11-27 11:10:29] 2025-11-27 16:09:27,508 | INFO     | sum of square deviations: 81672991875.3761
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | sum of deviations: 775158260693.135
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | mean x: 1764239900.9687986
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | mean y: 2777048.6567862714
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | intersect: -16741621579.070175
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | chi2: 21.933336845259568
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | current chi2=21.933336845259568 (change=16.064416926289706 %)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,513 | INFO     | right removable region: 640
[2025-11-27 11:10:29] 2025-11-27 16:09:27,518 | INFO     | sum of square deviations: 81672613065.37598
[2025-11-27 11:10:29] 2025-11-27 16:09:27,531 | INFO     | sum of deviations: 288593322109.1704
[2025-11-27 11:10:29] 2025-11-27 16:09:27,531 | INFO     | mean x: 1764240205.9687986
[2025-11-27 11:10:29] 2025-11-27 16:09:27,531 | INFO     | mean y: 2778989.55850234
[2025-11-27 11:10:29] 2025-11-27 16:09:27,531 | INFO     | intersect: -6231231689.535947
[2025-11-27 11:10:29] 2025-11-27 16:09:27,532 | INFO     | chi2: 21.662214125591753
[2025-11-27 11:10:29] 2025-11-27 16:09:27,532 | INFO     | current chi2=21.662214125591753 (change=17.10196281911935 %)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,532 | INFO     | left removable region: 10
[2025-11-27 11:10:29] 2025-11-27 16:09:27,532 | INFO     | sum of square deviations: 77539950193.37138
[2025-11-27 11:10:29] 2025-11-27 16:09:27,567 | INFO     | sum of deviations: 342071684628.57227
[2025-11-27 11:10:29] 2025-11-27 16:09:27,567 | INFO     | mean x: 1764240175.4857142
[2025-11-27 11:10:29] 2025-11-27 16:09:27,567 | INFO     | mean y: 2819921.3412698414
[2025-11-27 11:10:29] 2025-11-27 16:09:27,567 | INFO     | intersect: -7780221045.447963
[2025-11-27 11:10:29] 2025-11-27 16:09:27,568 | INFO     | chi2: 13.138803118171758
[2025-11-27 11:10:29] 2025-11-27 16:09:27,568 | INFO     | current memory leak: 4.41 B/s (using 630 data points, chi2=13.14)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | ..............................
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . Timing measurements:
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . get job = 0 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . initial setup = 8 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . payload setup = 80 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . stage-in = 0 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . payload execution = 39414 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . stage-out = 4 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | . log creation = 0 s
[2025-11-27 11:10:29] 2025-11-27 16:09:27,569 | INFO     | ..............................
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | 
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | job summary report
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | --------------------------------------------------
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | PanDA job id: 6898177899
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | task id: 47556161
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | errors: (none)
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | pilot state: finished 
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | transexitcode: 0
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | exeerrorcode: 0
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | exeerrordiag: 
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | exitcode: 0
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | exitmsg: OK
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | cpuconsumptiontime: 138383 s
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | nevents: 1000
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | neventsw: 0
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | pid: 4009816
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | pgrp: 4009816
[2025-11-27 11:10:29] 2025-11-27 16:09:28,149 | INFO     | corecount: 8
[2025-11-27 11:10:29] 2025-11-27 16:09:28,150 | INFO     | event service: False
[2025-11-27 11:10:29] 2025-11-27 16:09:28,150 | INFO     | sizes: {0: 2284265, 1: 2284293, 12: 2284293, 23: 2284321, 33: 2284349, 44: 2284405, 55: 2284561, 66: 2284589, 70: 2284879, 77: 2284907, 39498: 2328250, 39504: 2337
[2025-11-27 11:10:29] 2025-11-27 16:09:28,150 | INFO     | --------------------------------------------------
[2025-11-27 11:10:29] 2025-11-27 16:09:28,150 | INFO     | 
[2025-11-27 11:10:29] 2025-11-27 16:09:28,150 | INFO     | executing command: ls -lF /tmp/boinchome/slots/13
[2025-11-27 11:10:29] 2025-11-27 16:09:28,404 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,404 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,404 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,404 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | job 6898177899 has completed (purged errors)
[2025-11-27 11:10:29] 2025-11-27 16:09:28,405 | INFO     | overall cleanup function is called
[2025-11-27 11:10:29] 2025-11-27 16:09:29,506 | INFO     | --- collectZombieJob: --- 10, [4009816]
[2025-11-27 11:10:29] 2025-11-27 16:09:29,506 | INFO     | zombie collector waiting for pid 4009816
[2025-11-27 11:10:29] 2025-11-27 16:09:29,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:10:29] 2025-11-27 16:09:29,506 | INFO     | collected zombie processes
[2025-11-27 11:10:29] 2025-11-27 16:09:29,506 | INFO     | will attempt to kill all subprocesses of pid=4009816
[2025-11-27 11:10:29] 2025-11-27 16:09:32,289 | INFO     | process IDs to be killed: [4009816] (in reverse order)
[2025-11-27 11:10:29] 2025-11-27 16:09:32,661 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:10:29] 2025-11-27 16:09:32,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:10:29] 2025-11-27 16:09:32,698 | INFO     | did not find any defunct processes belonging to 4009816
[2025-11-27 11:10:29] 2025-11-27 16:09:32,734 | INFO     | did not find any defunct processes belonging to 4009816
[2025-11-27 11:10:29] 2025-11-27 16:09:32,786 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:10:29] 2025-11-27 16:09:32,786 | INFO     | ready for new job
[2025-11-27 11:10:29] 2025-11-27 16:09:32,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:10:29] 2025-11-27 16:09:32,793 | INFO     | ***************************************
[2025-11-27 11:10:29] 2025-11-27 16:09:32,794 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:10:29] 2025-11-27 16:09:32,794 | INFO     | ***************************************
[2025-11-27 11:10:29] 2025-11-27 16:09:32,794 | INFO     | 
[2025-11-27 11:10:29] 2025-11-27 16:09:32,800 | INFO     | architecture information:
[2025-11-27 11:10:29] 2025-11-27 16:09:32,810 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:10:29] 2025-11-27 16:09:32,856 | INFO     | cat /etc/os-release:
[2025-11-27 11:10:29] NAME="CentOS Linux"
[2025-11-27 11:10:29] VERSION="7 (Core)"
[2025-11-27 11:10:29] ID="centos"
[2025-11-27 11:10:29] ID_LIKE="rhel fedora"
[2025-11-27 11:10:29] VERSION_ID="7"
[2025-11-27 11:10:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:10:29] ANSI_COLOR="0;31"
[2025-11-27 11:10:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:10:29] HOME_URL="https://www.centos.org/"
[2025-11-27 11:10:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:10:29] 
[2025-11-27 11:10:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:10:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:10:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:10:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:10:29] 
[2025-11-27 11:10:29] 2025-11-27 16:09:32,856 | INFO     | ***************************************
[2025-11-27 11:10:29] 2025-11-27 16:09:33,359 | INFO     | executing command: df -mP /tmp/boinchome/slots/13
[2025-11-27 11:10:29] 2025-11-27 16:09:33,441 | INFO     | sufficient remaining disk space (158569857024 B)
[2025-11-27 11:10:29] 2025-11-27 16:09:33,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:10:29] 2025-11-27 16:09:33,442 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:10:29] 2025-11-27 16:09:33,442 | INFO     | update_server=False
[2025-11-27 11:10:29] 2025-11-27 16:09:33,442 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:10:29] 2025-11-27 16:09:33,442 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:10:29] 2025-11-27 16:09:33,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:10:29] 2025-11-27 16:09:33,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:10:29] 2025-11-27 16:09:33,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:10:29] 2025-11-27 16:09:33,463 | INFO     | aborting loop
[2025-11-27 11:10:29] 2025-11-27 16:09:33,808 | INFO     | all data control threads have been joined
[2025-11-27 11:10:29] 2025-11-27 16:09:34,448 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:34,449 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:34,469 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:34,524 | INFO     | all job control threads have been joined
[2025-11-27 11:10:29] 2025-11-27 16:09:34,617 | INFO     | all payload control threads have been joined
[2025-11-27 11:10:29] 2025-11-27 16:09:34,817 | INFO     | [data] control thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:34,901 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,026 | INFO     | [job] validate thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,111 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,156 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,156 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,195 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,324 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,451 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,530 | INFO     | [job] control thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,623 | INFO     | [payload] control thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:35,725 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:09:37,459 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:10:29] 2025-11-27 16:10:00,883 | INFO     | PID=3890694 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:10:29] 2025-11-27 16:10:00,884 | INFO     | .. there are 88 such processes running
[2025-11-27 11:10:29] 2025-11-27 16:10:00,885 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:10:29] 2025-11-27 16:10:00,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:10:29] 2025-11-27 16:10:00,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:10:29] 2025-11-27 16:10:20,598 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:10:29] 2025-11-27 16:10:22,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328528070464)>', '<ExcThread(monitor, started 140328031995648)>']
[2025-11-27 11:10:29] 2025-11-27 16:10:23,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:10:29] 2025-11-27 16:10:23,025 | INFO     | [monitor] control thread has ended
[2025-11-27 11:10:29] 2025-11-27 16:10:27,693 | INFO     | all workflow threads have been joined
[2025-11-27 11:10:29] 2025-11-27 16:10:27,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:10:29] 2025-11-27 16:10:27,695 | INFO     | traces error code: 0
[2025-11-27 11:10:29] 2025-11-27 16:10:27,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:10:29] 2025-11-27 16:10:27,993 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:10:29] 2025-11-27 16:10:28,017 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:10:29] 2025-11-27 16:10:28,046 [wrapper] pilotpid: 3890694
[2025-11-27 11:10:29] 2025-11-27 16:10:28,063 [wrapper] Pilot exit status: 0
[2025-11-27 11:10:29] 2025-11-27 16:10:28,148 [wrapper] pandaids: 6898177899
[2025-11-27 11:10:29] 2025-11-27 16:10:28,363 [wrapper] cleanup supervisor_pilot  743933 3890696
[2025-11-27 11:10:29] 2025-11-27 16:10:28,382 [wrapper] Test setup, not cleaning
[2025-11-27 11:10:29] 2025-11-27 16:10:28,421 [wrapper] apfmon messages muted
[2025-11-27 11:10:29] 2025-11-27 16:10:28,452 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:10:29] 2025-11-27 16:10:28,466 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:10:29]  *** Error codes and diagnostics ***
[2025-11-27 11:10:29]     "exeErrorCode": 0,
[2025-11-27 11:10:29]     "exeErrorDiag": "",
[2025-11-27 11:10:29]     "pilotErrorCode": 0,
[2025-11-27 11:10:29]     "pilotErrorDiag": "",
[2025-11-27 11:10:29]  *** Listing of results directory ***
[2025-11-27 11:10:29] total 1304536
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 11:10:29] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:10:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:05 run_atlas
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:05 job.xml
[2025-11-27 11:10:29] -rw-r--r--. 2 boincer umatlas 407110954 Nov 27 00:05 EVNT.47483658._002470.pool.root.1
[2025-11-27 11:10:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:05 start_atlas.sh
[2025-11-27 11:10:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:05 shared
[2025-11-27 11:10:29] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:05 input.tar.gz
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:05 boinc_lockfile
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:05 pandaJob.out
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas        57 Nov 27 00:05 setup.sh.local
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas    991570 Nov 27 00:08 agis_schedconf.cvmfs.json
[2025-11-27 11:10:29] drwx------. 5 boincer umatlas      4096 Nov 27 00:08 pilot3
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:46 boinc_task_state.xml
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 11:03 init_data.xml
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas 911327431 Nov 27 11:08 HITS.47556161._004526.pool.root.1
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas      1066 Nov 27 11:08 memory_monitor_summary.json
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas   1854609 Nov 27 11:08 log.47556161._004526.job.log.tgz.1
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas        95 Nov 27 11:09 pilot_heartbeat.json
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas      8618 Nov 27 11:09 heartbeat.json
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:10 boinc_mmap_file
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:10 wrapper_checkpoint.txt
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas      4826 Nov 27 11:10 pilotlog.txt
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas   4888443 Nov 27 11:10 log.47556161._004526.job.log.1
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas       353 Nov 27 11:10 output.list
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:10 runtime_log
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas   6758400 Nov 27 11:10 result.tar.gz
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas      9356 Nov 27 11:10 runtime_log.err
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas       664 Nov 27 11:10 LDILDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFvMKDmDgyaEm.diag
[2025-11-27 11:10:29] -rw-r--r--. 1 boincer umatlas     21902 Nov 27 11:10 stderr.txt
[2025-11-27 11:10:29] HITS file was successfully produced:
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas 911327431 Nov 27 11:08 shared/HITS.pool.root.1
[2025-11-27 11:10:29]  *** Contents of shared directory: ***
[2025-11-27 11:10:29] total 1294748
[2025-11-27 11:10:29] -rw-r--r--. 2 boincer umatlas 407110954 Nov 27 00:05 ATLAS.root_0
[2025-11-27 11:10:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:05 start_atlas.sh
[2025-11-27 11:10:29] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:05 input.tar.gz
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas 911327431 Nov 27 11:08 HITS.pool.root.1
[2025-11-27 11:10:29] -rw-------. 1 boincer umatlas   6758400 Nov 27 11:10 result.tar.gz
11:10:30 (3827277): run_atlas exited; CPU time 139265.928201
11:10:30 (3827277): called boinc_finish(0)

</stderr_txt>
]]>

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