Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:11 (746203): wrapper (7.7.26015): starting
00:13:11 (746203): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:13:11] Arguments: --nthreads 8
[2025-11-27 00:13:11] Threads: 8
[2025-11-27 00:13:11] Checking for CVMFS
[2025-11-27 00:13:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:13:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:13:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:13:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:13:12] 2.13.3.0 12763 31009 211424 153348 1 373 38259032 40960001 57307 16776704 0 275300216 99.746 169901874 35963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:13:12] CVMFS is ok
[2025-11-27 00:13:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:13:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:13:12] Further information can be found at the LHC@home message board.
[2025-11-27 00:13:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:13:12] Checking for apptainer binary...
[2025-11-27 00:13:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:13:12] Running /usr/bin/apptainer --version
[2025-11-27 00:13:12] apptainer version 1.4.4-1.el9
[2025-11-27 00:13:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:13:12] c7-2-17.aglt2.org
[2025-11-27 00:13:12] apptainer works
[2025-11-27 00:13:12] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:13:12] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:13:12] Starting ATLAS job with PandaID=6898175046
[2025-11-27 00:13:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:54:53]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:54:53] 2025-11-27 20:54:08,193 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 15:54:53] 2025-11-27 20:54:08,210 | INFO     | executing command: lscpu
[2025-11-27 15:54:53] 2025-11-27 20:54:08,383 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 15:54:53] 2025-11-27 20:54:10,010 | INFO     | time since job start (56418s) is within the limit (172800.0s)
[2025-11-27 15:54:53] 2025-11-27 20:54:10,471 | INFO     | monitor loop #3176: job 0:6898175046 is in state 'finished'
[2025-11-27 15:54:53] 2025-11-27 20:54:10,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:54:53] 2025-11-27 20:54:12,027 | INFO     | time since job start (56420s) is within the limit (172800.0s)
[2025-11-27 15:54:53] 2025-11-27 20:54:12,976 | INFO     | monitor loop #3177: job 0:6898175046 is in state 'finished'
[2025-11-27 15:54:53] 2025-11-27 20:54:12,976 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:54:53] 2025-11-27 20:54:15,341 | INFO     | PID=762483 has CPU usage=17.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:54:53] 2025-11-27 20:54:15,345 | INFO     | .. there are 81 such processes running
[2025-11-27 15:54:53] 2025-11-27 20:54:15,485 | INFO     | monitor loop #3178: job 0:6898175046 is in state 'finished'
[2025-11-27 15:54:53] 2025-11-27 20:54:15,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,348 | INFO     | time since job start (56424s) is within the limit (172800.0s)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,449 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 15:54:53] 2025-11-27 20:54:16,462 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3273.91371875
[2025-11-27 15:54:53] 2025-11-27 20:54:16,477 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6898175046/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,478 | INFO     | extracted standard info from prmon json
[2025-11-27 15:54:53] 2025-11-27 20:54:16,478 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:54:53] 2025-11-27 20:54:16,478 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:54:53] 2025-11-27 20:54:16,489 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:54:53] 2025-11-27 20:54:16,490 | INFO     | sum of square deviations: 243824338385.96088
[2025-11-27 15:54:53] 2025-11-27 20:54:16,512 | INFO     | sum of deviations: 1490015096102.0
[2025-11-27 15:54:53] 2025-11-27 20:54:16,512 | INFO     | mean x: 1764248655.8526545
[2025-11-27 15:54:53] 2025-11-27 20:54:16,512 | INFO     | mean y: 2890102.448537378
[2025-11-27 15:54:53] 2025-11-27 20:54:16,512 | INFO     | intersect: -10778466458.999136
[2025-11-27 15:54:53] 2025-11-27 20:54:16,513 | INFO     | chi2: 17.693848091920927
[2025-11-27 15:54:53] 2025-11-27 20:54:16,514 | INFO     | sum of square deviations: 239883471964.80615
[2025-11-27 15:54:53] 2025-11-27 20:54:16,530 | INFO     | sum of deviations: 1788205333971.4558
[2025-11-27 15:54:53] 2025-11-27 20:54:16,530 | INFO     | mean x: 1764248503.3572984
[2025-11-27 15:54:53] 2025-11-27 20:54:16,531 | INFO     | mean y: 2901641.3126361654
[2025-11-27 15:54:53] 2025-11-27 20:54:16,531 | INFO     | intersect: -13148644642.032522
[2025-11-27 15:54:53] 2025-11-27 20:54:16,532 | INFO     | chi2: 14.627134851346684
[2025-11-27 15:54:53] 2025-11-27 20:54:16,532 | INFO     | current chi2=14.627134851346684 (change=17.33208754049672 %)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,532 | INFO     | right removable region: 917
[2025-11-27 15:54:53] 2025-11-27 20:54:16,533 | INFO     | sum of square deviations: 239882991894.80606
[2025-11-27 15:54:53] 2025-11-27 20:54:16,552 | INFO     | sum of deviations: 1121169682789.1497
[2025-11-27 15:54:53] 2025-11-27 20:54:16,552 | INFO     | mean x: 1764248808.3572984
[2025-11-27 15:54:53] 2025-11-27 20:54:16,552 | INFO     | mean y: 2904372.447712418
[2025-11-27 15:54:53] 2025-11-27 20:54:16,552 | INFO     | intersect: -8242875210.351946
[2025-11-27 15:54:53] 2025-11-27 20:54:16,553 | INFO     | chi2: 13.672170805790293
[2025-11-27 15:54:53] 2025-11-27 20:54:16,553 | INFO     | current chi2=13.672170805790293 (change=22.729240497814303 %)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,553 | INFO     | left removable region: 10
[2025-11-27 15:54:53] 2025-11-27 20:54:16,554 | INFO     | sum of square deviations: 231362576882.12363
[2025-11-27 15:54:53] 2025-11-27 20:54:16,584 | INFO     | sum of deviations: 1240886983906.2825
[2025-11-27 15:54:53] 2025-11-27 20:54:16,585 | INFO     | mean x: 1764248777.8676958
[2025-11-27 15:54:53] 2025-11-27 20:54:16,585 | INFO     | mean y: 2927850.9106945978
[2025-11-27 15:54:53] 2025-11-27 20:54:16,585 | INFO     | intersect: -9459420703.16846
[2025-11-27 15:54:53] 2025-11-27 20:54:16,586 | INFO     | chi2: 8.12775009785361
[2025-11-27 15:54:53] 2025-11-27 20:54:16,586 | INFO     | current memory leak: 5.36 B/s (using 907 data points, chi2=8.13)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | could have reported an average CPU frequency of 3352 MHz (34 samples)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | ..............................
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | . Timing measurements:
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | . get job = 0 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | . initial setup = 4 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | . payload setup = 25 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | . stage-in = 0 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,591 | INFO     | . payload execution = 56318 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,592 | INFO     | . stage-out = 5 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,592 | INFO     | . log creation = 1 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,592 | INFO     | ..............................
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | 
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | job summary report
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | --------------------------------------------------
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | PanDA job id: 6898175046
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | task id: 47556161
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | errors: (none)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | pilot state: finished 
[2025-11-27 15:54:53] 2025-11-27 20:54:16,830 | INFO     | transexitcode: 0
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | exeerrorcode: 0
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | exeerrordiag: 
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | exitcode: 0
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | exitmsg: OK
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | cpuconsumptiontime: 185766 s
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | nevents: 1000
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | neventsw: 0
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | pid: 797319
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | pgrp: 797319
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | corecount: 8
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | event service: False
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 25: 2284611, 34: 2284639, 56348: 2335671, 56349: 2335670, 56355: 2344722, 56356: 2344778, 56367: 2345024}
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | --------------------------------------------------
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | 
[2025-11-27 15:54:53] 2025-11-27 20:54:16,831 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 15:54:53] 2025-11-27 20:54:16,867 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,867 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,867 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,867 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,868 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:54:53] 2025-11-27 20:54:16,869 | INFO     | job 6898175046 has completed (purged errors)
[2025-11-27 15:54:53] 2025-11-27 20:54:16,869 | INFO     | overall cleanup function is called
[2025-11-27 15:54:53] 2025-11-27 20:54:17,887 | INFO     | --- collectZombieJob: --- 10, [797319]
[2025-11-27 15:54:53] 2025-11-27 20:54:17,887 | INFO     | zombie collector waiting for pid 797319
[2025-11-27 15:54:53] 2025-11-27 20:54:17,887 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:54:53] 2025-11-27 20:54:17,887 | INFO     | collected zombie processes
[2025-11-27 15:54:53] 2025-11-27 20:54:17,888 | INFO     | will attempt to kill all subprocesses of pid=797319
[2025-11-27 15:54:53] 2025-11-27 20:54:19,194 | INFO     | process IDs to be killed: [797319] (in reverse order)
[2025-11-27 15:54:53] 2025-11-27 20:54:19,446 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:54:53] 2025-11-27 20:54:19,459 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:54:53] 2025-11-27 20:54:19,648 | INFO     | did not find any defunct processes belonging to 797319
[2025-11-27 15:54:53] 2025-11-27 20:54:19,715 | INFO     | did not find any defunct processes belonging to 797319
[2025-11-27 15:54:53] 2025-11-27 20:54:19,716 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:54:53] 2025-11-27 20:54:19,716 | INFO     | ready for new job
[2025-11-27 15:54:53] 2025-11-27 20:54:19,716 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:54:53] 2025-11-27 20:54:19,724 | INFO     | ***************************************
[2025-11-27 15:54:53] 2025-11-27 20:54:19,724 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:54:53] 2025-11-27 20:54:19,724 | INFO     | ***************************************
[2025-11-27 15:54:53] 2025-11-27 20:54:19,724 | INFO     | 
[2025-11-27 15:54:53] 2025-11-27 20:54:19,733 | INFO     | architecture information:
[2025-11-27 15:54:53] 2025-11-27 20:54:19,740 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:54:53] 2025-11-27 20:54:19,778 | INFO     | cat /etc/os-release:
[2025-11-27 15:54:53] NAME="CentOS Linux"
[2025-11-27 15:54:53] VERSION="7 (Core)"
[2025-11-27 15:54:53] ID="centos"
[2025-11-27 15:54:53] ID_LIKE="rhel fedora"
[2025-11-27 15:54:53] VERSION_ID="7"
[2025-11-27 15:54:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:54:53] ANSI_COLOR="0;31"
[2025-11-27 15:54:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:54:53] HOME_URL="https://www.centos.org/"
[2025-11-27 15:54:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:54:53] 
[2025-11-27 15:54:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:54:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:54:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:54:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:54:53] 
[2025-11-27 15:54:53] 2025-11-27 20:54:19,778 | INFO     | ***************************************
[2025-11-27 15:54:53] 2025-11-27 20:54:20,282 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 15:54:53] 2025-11-27 20:54:20,527 | INFO     | sufficient remaining disk space (123580973056 B)
[2025-11-27 15:54:53] 2025-11-27 20:54:20,528 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:54:53] 2025-11-27 20:54:20,528 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:54:53] 2025-11-27 20:54:20,528 | INFO     | update_server=False
[2025-11-27 15:54:53] 2025-11-27 20:54:20,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:54:53] 2025-11-27 20:54:20,601 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:54:53] 2025-11-27 20:54:20,601 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:54:53] 2025-11-27 20:54:20,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:54:53] 2025-11-27 20:54:20,602 | INFO     | will abort loop
[2025-11-27 15:54:53] 2025-11-27 20:54:20,647 | INFO     | all job control threads have been joined
[2025-11-27 15:54:53] 2025-11-27 20:54:20,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:54:53] 2025-11-27 20:54:21,286 | INFO     | all payload control threads have been joined
[2025-11-27 15:54:53] 2025-11-27 20:54:21,534 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:21,539 | INFO     | all data control threads have been joined
[2025-11-27 15:54:53] 2025-11-27 20:54:21,607 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:21,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:54:53] 2025-11-27 20:54:21,652 | INFO     | [job] control thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:21,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:54:53] 2025-11-27 20:54:22,127 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,150 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,274 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,292 | INFO     | [payload] control thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,413 | INFO     | [job] validate thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,461 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,545 | INFO     | [data] control thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,729 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,881 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:22,906 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:23,003 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:23,004 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:25,678 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:54:53] 2025-11-27 20:54:31,748 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:54:53] 2025-11-27 20:54:32,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140261056923456)>', '<ExcThread(monitor, started 140260696626944)>']
[2025-11-27 15:54:53] 2025-11-27 20:54:37,997 | INFO     | all workflow threads have been joined
[2025-11-27 15:54:53] 2025-11-27 20:54:38,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:54:53] 2025-11-27 20:54:38,015 | INFO     | traces error code: 0
[2025-11-27 15:54:53] 2025-11-27 20:54:38,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:54:53] 2025-11-27 20:54:51,909 | INFO     | PID=762483 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:54:53] 2025-11-27 20:54:51,910 | INFO     | .. there are 81 such processes running
[2025-11-27 15:54:53] 2025-11-27 20:54:51,910 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:54:53] 2025-11-27 20:54:51,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:54:53] 2025-11-27 20:54:51,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:54:53] 2025-11-27 20:54:51,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:54:53] 2025-11-27 20:54:51,910 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 15:54:53] 2025-11-27 20:54:51,911 | INFO     | [monitor] control thread has ended
[2025-11-27 15:54:53] 2025-11-27 20:54:52,450 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:54:53] 2025-11-27 20:54:52,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:54:53] 2025-11-27 20:54:52,490 [wrapper] pilotpid: 762483
[2025-11-27 15:54:53] 2025-11-27 20:54:52,510 [wrapper] Pilot exit status: 0
[2025-11-27 15:54:53] 2025-11-27 20:54:52,694 [wrapper] pandaids: 6898175046
[2025-11-27 15:54:53] 2025-11-27 20:54:52,928 [wrapper] cleanup supervisor_pilot 2721855 762484
[2025-11-27 15:54:53] 2025-11-27 20:54:52,936 [wrapper] Test setup, not cleaning
[2025-11-27 15:54:53] 2025-11-27 20:54:52,956 [wrapper] apfmon messages muted
[2025-11-27 15:54:53] 2025-11-27 20:54:52,990 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:54:53] 2025-11-27 20:54:53,013 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:54:53]  *** Error codes and diagnostics ***
[2025-11-27 15:54:53]     "exeErrorCode": 0,
[2025-11-27 15:54:53]     "exeErrorDiag": "",
[2025-11-27 15:54:53]     "pilotErrorCode": 0,
[2025-11-27 15:54:53]     "pilotErrorDiag": "",
[2025-11-27 15:54:53]  *** Listing of results directory ***
[2025-11-27 15:54:53] total 1308536
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 15:54:53] -rwx------. 1 boincer umatlas     36292 Nov 25 22:47 runpilot2-wrapper.sh
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:54:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:13 run_atlas
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:13 job.xml
[2025-11-27 15:54:53] -rw-r--r--. 2 boincer umatlas 409606297 Nov 27 00:13 EVNT.47483658._002451.pool.root.1
[2025-11-27 15:54:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:13 start_atlas.sh
[2025-11-27 15:54:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:13 shared
[2025-11-27 15:54:53] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:13 input.tar.gz
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:13 boinc_lockfile
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:13 pandaJob.out
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas        57 Nov 27 00:13 setup.sh.local
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas    991570 Nov 27 00:13 agis_schedconf.cvmfs.json
[2025-11-27 15:54:53] drwx------. 5 boincer umatlas      4096 Nov 27 00:13 pilot3
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:31 boinc_task_state.xml
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 15:46 init_data.xml
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas 908557950 Nov 27 15:53 HITS.47556161._004338.pool.root.1
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas      1070 Nov 27 15:53 memory_monitor_summary.json
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas        95 Nov 27 15:54 pilot_heartbeat.json
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas   2064802 Nov 27 15:54 log.47556161._004338.job.log.tgz.1
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas      8630 Nov 27 15:54 heartbeat.json
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas       892 Nov 27 15:54 pilotlog.txt
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:54 boinc_mmap_file
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:54 wrapper_checkpoint.txt
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas   6861178 Nov 27 15:54 log.47556161._004338.job.log.1
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas       353 Nov 27 15:54 output.list
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:54 runtime_log
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas   8949760 Nov 27 15:54 result.tar.gz
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas      9356 Nov 27 15:54 runtime_log.err
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas       663 Nov 27 15:54 MhCODmrfLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQrMKDmmWCMCn.diag
[2025-11-27 15:54:53] -rw-r--r--. 1 boincer umatlas     21862 Nov 27 15:54 stderr.txt
[2025-11-27 15:54:53] HITS file was successfully produced:
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas 908557950 Nov 27 15:53 shared/HITS.pool.root.1
[2025-11-27 15:54:53]  *** Contents of shared directory: ***
[2025-11-27 15:54:53] total 1296616
[2025-11-27 15:54:53] -rw-r--r--. 2 boincer umatlas 409606297 Nov 27 00:13 ATLAS.root_0
[2025-11-27 15:54:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:13 start_atlas.sh
[2025-11-27 15:54:53] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:13 input.tar.gz
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas 908557950 Nov 27 15:53 HITS.pool.root.1
[2025-11-27 15:54:53] -rw-------. 1 boincer umatlas   8949760 Nov 27 15:54 result.tar.gz
15:55:14 (746203): run_atlas exited; CPU time 187296.109464
15:55:14 (746203): called boinc_finish(0)

</stderr_txt>
]]>

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