Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:51 (411705): wrapper (7.7.26015): starting
00:03:51 (411705): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:03:51] Arguments: --nthreads 9
[2025-11-27 00:03:51] Threads: 9
[2025-11-27 00:03:51] Checking for CVMFS
[2025-11-27 00:03:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:53] 2.13.3.0 12468 31048 373420 153347 2 652 31465192 32947200 37194 16776704 0 122677712 99.423 180379812 34365 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:03:53] CVMFS is ok
[2025-11-27 00:03:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:53] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:53] Checking for apptainer binary...
[2025-11-27 00:03:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:53] Running /usr/bin/apptainer --version
[2025-11-27 00:03:54] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:54] c6-6-8-1.aglt2.org
[2025-11-27 00:03:54] apptainer works
[2025-11-27 00:03:54] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:03:54] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:03:54] Starting ATLAS job with PandaID=6898177888
[2025-11-27 00:03:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:08:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:08:40] 2025-11-27 23:07:30,821 | INFO     | time since job start (64956s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:32,828 | INFO     | time since job start (64958s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:32,983 | INFO     | monitor loop #3620: job 0:6898177888 is in state 'finished'
[2025-11-27 18:08:40] 2025-11-27 23:07:32,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:08:40] 2025-11-27 23:07:34,853 | INFO     | time since job start (64960s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:35,500 | INFO     | monitor loop #3621: job 0:6898177888 is in state 'finished'
[2025-11-27 18:08:40] 2025-11-27 23:07:35,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:08:40] 2025-11-27 23:07:36,861 | INFO     | time since job start (64962s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:38,005 | INFO     | monitor loop #3622: job 0:6898177888 is in state 'finished'
[2025-11-27 18:08:40] 2025-11-27 23:07:38,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:08:40] 2025-11-27 23:07:38,868 | INFO     | time since job start (64964s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:40,530 | INFO     | monitor loop #3623: job 0:6898177888 is in state 'finished'
[2025-11-27 18:08:40] 2025-11-27 23:07:40,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:08:40] 2025-11-27 23:07:40,905 | INFO     | time since job start (64966s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:42,912 | INFO     | time since job start (64968s) is within the limit (172800.0s)
[2025-11-27 18:08:40] 2025-11-27 23:07:43,052 | INFO     | monitor loop #3624: job 0:6898177888 is in state 'finished'
[2025-11-27 18:08:40] 2025-11-27 23:07:43,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:08:40] 2025-11-27 23:07:43,344 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:08:40] 2025-11-27 23:07:43,392 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2619.1853958333327
[2025-11-27 18:08:40] 2025-11-27 23:07:43,442 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6898177888/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:08:40] 2025-11-27 23:07:43,443 | INFO     | extracted standard info from prmon json
[2025-11-27 18:08:40] 2025-11-27 23:07:43,444 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:08:40] 2025-11-27 23:07:43,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:08:40] 2025-11-27 23:07:43,563 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:08:40] 2025-11-27 23:07:43,587 | INFO     | sum of square deviations: 372455861655.7046
[2025-11-27 18:08:40] 2025-11-27 23:07:43,732 | INFO     | sum of deviations: 2230686511924.37
[2025-11-27 18:08:40] 2025-11-27 23:07:43,732 | INFO     | mean x: 1764252414.3697083
[2025-11-27 18:08:40] 2025-11-27 23:07:43,732 | INFO     | mean y: 3056745.5766698024
[2025-11-27 18:08:40] 2025-11-27 23:07:43,733 | INFO     | intersect: -10563280019.455784
[2025-11-27 18:08:40] 2025-11-27 23:07:43,752 | INFO     | chi2: 16.310372559765725
[2025-11-27 18:08:40] 2025-11-27 23:07:43,754 | INFO     | sum of square deviations: 367225545794.99475
[2025-11-27 18:08:40] 2025-11-27 23:07:43,929 | INFO     | sum of deviations: 2608491804035.727
[2025-11-27 18:08:40] 2025-11-27 23:07:43,929 | INFO     | mean x: 1764252261.8809073
[2025-11-27 18:08:40] 2025-11-27 23:07:43,929 | INFO     | mean y: 3067757.823251418
[2025-11-27 18:08:40] 2025-11-27 23:07:43,930 | INFO     | intersect: -12528842448.491608
[2025-11-27 18:08:40] 2025-11-27 23:07:43,931 | INFO     | chi2: 12.984739352291705
[2025-11-27 18:08:40] 2025-11-27 23:07:43,931 | INFO     | current chi2=12.984739352291705 (change=20.38968267149005 %)
[2025-11-27 18:08:40] 2025-11-27 23:07:43,932 | INFO     | right removable region: 1057
[2025-11-27 18:08:40] 2025-11-27 23:07:43,938 | INFO     | sum of square deviations: 367224009204.99445
[2025-11-27 18:08:40] 2025-11-27 23:07:44,122 | INFO     | sum of deviations: 1798565179683.2
[2025-11-27 18:08:40] 2025-11-27 23:07:44,127 | INFO     | mean x: 1764252566.8809073
[2025-11-27 18:08:40] 2025-11-27 23:07:44,130 | INFO     | mean y: 3069338.668241966
[2025-11-27 18:08:40] 2025-11-27 23:07:44,130 | INFO     | intersect: -8637768829.370445
[2025-11-27 18:08:40] 2025-11-27 23:07:44,145 | INFO     | chi2: 12.631780874825521
[2025-11-27 18:08:40] 2025-11-27 23:07:44,146 | INFO     | current chi2=12.631780874825521 (change=22.553695027264546 %)
[2025-11-27 18:08:40] 2025-11-27 23:07:44,146 | INFO     | left removable region: 10
[2025-11-27 18:08:40] 2025-11-27 23:07:44,153 | INFO     | sum of square deviations: 355889183656.91693
[2025-11-27 18:08:40] 2025-11-27 23:07:44,273 | INFO     | sum of deviations: 2100550817999.8955
[2025-11-27 18:08:40] 2025-11-27 23:07:44,274 | INFO     | mean x: 1764252536.3982809
[2025-11-27 18:08:40] 2025-11-27 23:07:44,274 | INFO     | mean y: 3086892.4966571154
[2025-11-27 18:08:40] 2025-11-27 23:07:44,274 | INFO     | intersect: -10409991893.461475
[2025-11-27 18:08:40] 2025-11-27 23:07:44,275 | INFO     | chi2: 8.288875216442726
[2025-11-27 18:08:40] 2025-11-27 23:07:44,276 | INFO     | current memory leak: 5.90 B/s (using 1047 data points, chi2=8.29)
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | could have reported an average CPU frequency of 2611 MHz (39 samples)
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | ..............................
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | . Timing measurements:
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | . get job = 0 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | . initial setup = 5 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | . payload setup = 37 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | . stage-in = 0 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,277 | INFO     | . payload execution = 64819 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,278 | INFO     | . stage-out = 12 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,278 | INFO     | . log creation = 3 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,278 | INFO     | ..............................
[2025-11-27 18:08:40] 2025-11-27 23:07:44,447 | INFO     | 
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | job summary report
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | --------------------------------------------------
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | PanDA job id: 6898177888
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | task id: 47556173
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | errors: (none)
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:08:40] 2025-11-27 23:07:44,448 | INFO     | pilot state: finished 
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | transexitcode: 0
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | exeerrorcode: 0
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | exeerrordiag: 
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | exitcode: 0
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | exitmsg: OK
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | cpuconsumptiontime: 281729 s
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | nevents: 1000
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | neventsw: 0
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | pid: 438597
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | pgrp: 438597
[2025-11-27 18:08:40] 2025-11-27 23:07:44,449 | INFO     | corecount: 9
[2025-11-27 18:08:40] 2025-11-27 23:07:44,450 | INFO     | event service: False
[2025-11-27 18:08:40] 2025-11-27 23:07:44,450 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 29: 2284610, 33: 2284638, 64861: 2339091, 64874: 2348085, 64877: 2348141, 64908: 2348387}
[2025-11-27 18:08:40] 2025-11-27 23:07:44,450 | INFO     | --------------------------------------------------
[2025-11-27 18:08:40] 2025-11-27 23:07:44,450 | INFO     | 
[2025-11-27 18:08:40] 2025-11-27 23:07:44,450 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 18:08:40] 2025-11-27 23:07:44,606 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,606 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,606 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,606 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | job 6898177888 has completed (purged errors)
[2025-11-27 18:08:40] 2025-11-27 23:07:44,608 | INFO     | overall cleanup function is called
[2025-11-27 18:08:40] 2025-11-27 23:07:45,715 | INFO     | --- collectZombieJob: --- 10, [438597]
[2025-11-27 18:08:40] 2025-11-27 23:07:45,715 | INFO     | zombie collector waiting for pid 438597
[2025-11-27 18:08:40] 2025-11-27 23:07:45,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:08:40] 2025-11-27 23:07:45,716 | INFO     | collected zombie processes
[2025-11-27 18:08:40] 2025-11-27 23:07:45,716 | INFO     | will attempt to kill all subprocesses of pid=438597
[2025-11-27 18:08:40] 2025-11-27 23:07:47,480 | INFO     | process IDs to be killed: [438597] (in reverse order)
[2025-11-27 18:08:40] 2025-11-27 23:07:47,856 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:08:40] 2025-11-27 23:07:47,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:08:40] 2025-11-27 23:07:47,925 | INFO     | did not find any defunct processes belonging to 438597
[2025-11-27 18:08:40] 2025-11-27 23:07:48,035 | INFO     | did not find any defunct processes belonging to 438597
[2025-11-27 18:08:40] 2025-11-27 23:07:48,062 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:08:40] 2025-11-27 23:07:48,062 | INFO     | ready for new job
[2025-11-27 18:08:40] 2025-11-27 23:07:48,062 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:08:40] 2025-11-27 23:07:48,103 | INFO     | ***************************************
[2025-11-27 18:08:40] 2025-11-27 23:07:48,109 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:08:40] 2025-11-27 23:07:48,112 | INFO     | ***************************************
[2025-11-27 18:08:40] 2025-11-27 23:07:48,113 | INFO     | 
[2025-11-27 18:08:40] 2025-11-27 23:07:48,160 | INFO     | architecture information:
[2025-11-27 18:08:40] 2025-11-27 23:07:48,180 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:08:40] 2025-11-27 23:07:48,297 | INFO     | cat /etc/os-release:
[2025-11-27 18:08:40] NAME="CentOS Linux"
[2025-11-27 18:08:40] VERSION="7 (Core)"
[2025-11-27 18:08:40] ID="centos"
[2025-11-27 18:08:40] ID_LIKE="rhel fedora"
[2025-11-27 18:08:40] VERSION_ID="7"
[2025-11-27 18:08:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:08:40] ANSI_COLOR="0;31"
[2025-11-27 18:08:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:08:40] HOME_URL="https://www.centos.org/"
[2025-11-27 18:08:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:08:40] 
[2025-11-27 18:08:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:08:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:08:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:08:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:08:40] 
[2025-11-27 18:08:40] 2025-11-27 23:07:48,298 | INFO     | ***************************************
[2025-11-27 18:08:40] 2025-11-27 23:07:48,801 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 18:08:40] 2025-11-27 23:07:48,896 | INFO     | sufficient remaining disk space (67720183808 B)
[2025-11-27 18:08:40] 2025-11-27 23:07:48,896 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:08:40] 2025-11-27 23:07:48,897 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:08:40] 2025-11-27 23:07:48,897 | INFO     | update_server=False
[2025-11-27 18:08:40] 2025-11-27 23:07:48,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:08:40] 2025-11-27 23:07:48,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:08:40] 2025-11-27 23:07:48,905 | INFO     | all job control threads have been joined
[2025-11-27 18:08:40] 2025-11-27 23:07:49,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:08:40] 2025-11-27 23:07:49,112 | INFO     | aborting loop
[2025-11-27 18:08:40] 2025-11-27 23:07:49,367 | INFO     | all payload control threads have been joined
[2025-11-27 18:08:40] 2025-11-27 23:07:49,386 | INFO     | all data control threads have been joined
[2025-11-27 18:08:40] 2025-11-27 23:07:49,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:08:40] 2025-11-27 23:07:49,905 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:49,911 | INFO     | [job] control thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:49,939 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,090 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,118 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,392 | INFO     | [data] control thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,393 | INFO     | [payload] control thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,486 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,487 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,515 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:08:40] 2025-11-27 23:07:50,787 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,907 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:08:40] 2025-11-27 23:07:50,976 | INFO     | [job] validate thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,977 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:50,978 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:51,056 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:54,944 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:08:40] 2025-11-27 23:07:55,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182800127808)>', '<ExcThread(monitor, started 140182078609152)>']
[2025-11-27 18:08:40] 2025-11-27 23:08:00,576 | INFO     | all workflow threads have been joined
[2025-11-27 18:08:40] 2025-11-27 23:08:00,577 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:08:40] 2025-11-27 23:08:00,577 | INFO     | traces error code: 0
[2025-11-27 18:08:40] 2025-11-27 23:08:00,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:08:40] 2025-11-27 23:08:18,745 | INFO     | PID=422791 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:08:40] 2025-11-27 23:08:18,746 | INFO     | .. there are 39 such processes running
[2025-11-27 18:08:40] 2025-11-27 23:08:18,746 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:08:40] 2025-11-27 23:08:18,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:08:40] 2025-11-27 23:08:18,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:08:40] 2025-11-27 23:08:18,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:08:40] 2025-11-27 23:08:18,746 | INFO     | [monitor] control thread has ended
[2025-11-27 18:08:40] 2025-11-27 23:08:19,982 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:08:40] 2025-11-27 23:08:20,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:08:40] 2025-11-27 23:08:20,027 [wrapper] pilotpid: 422791
[2025-11-27 18:08:40] 2025-11-27 23:08:20,041 [wrapper] Pilot exit status: 0
[2025-11-27 18:08:40] 2025-11-27 23:08:20,148 [wrapper] pandaids: 6898177888
[2025-11-27 18:08:40] 2025-11-27 23:08:20,700 [wrapper] cleanup supervisor_pilot 4127618 422792
[2025-11-27 18:08:40] 2025-11-27 23:08:20,727 [wrapper] Test setup, not cleaning
[2025-11-27 18:08:40] 2025-11-27 23:08:20,743 [wrapper] apfmon messages muted
[2025-11-27 18:08:40] 2025-11-27 23:08:20,751 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:08:40] 2025-11-27 23:08:20,755 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:08:40]  *** Error codes and diagnostics ***
[2025-11-27 18:08:40]     "exeErrorCode": 0,
[2025-11-27 18:08:40]     "exeErrorDiag": "",
[2025-11-27 18:08:40]     "pilotErrorCode": 0,
[2025-11-27 18:08:40]     "pilotErrorDiag": "",
[2025-11-27 18:08:40]  *** Listing of results directory ***
[2025-11-27 18:08:40] total 1319960
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 18:08:40] -rwx------ 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:08:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 18:08:40] -rw-r--r-- 2 boincer umatlas 410550768 Nov 27 00:03 EVNT.47483658._003173.pool.root.1
[2025-11-27 18:08:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 18:08:40] drwxrwx--x 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 18:08:40] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 00:03 input.tar.gz
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 00:03 pandaJob.out
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 18:08:40] drwx------ 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas       533 Nov 27 17:44 boinc_task_state.xml
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas      6877 Nov 27 18:00 init_data.xml
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas 916954327 Nov 27 18:05 HITS.47556173._001293.pool.root.1
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas      1059 Nov 27 18:06 memory_monitor_summary.json
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas   1516240 Nov 27 18:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas   2277190 Nov 27 18:07 log.47556173._001293.job.log.tgz.1
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas        95 Nov 27 18:07 pilot_heartbeat.json
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas      8635 Nov 27 18:07 heartbeat.json
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas       822 Nov 27 18:08 pilotlog.txt
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas   7828928 Nov 27 18:08 log.47556173._001293.job.log.1
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas       353 Nov 27 18:08 output.list
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas       620 Nov 27 18:08 runtime_log
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas  10127360 Nov 27 18:08 result.tar.gz
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 18:08 runtime_log.err
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas       660 Nov 27 18:08 1D5NDmtyLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhtJKDmZPKg8n.diag
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 18:08 boinc_mmap_file
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas        29 Nov 27 18:08 wrapper_checkpoint.txt
[2025-11-27 18:08:40] -rw-r--r-- 1 boincer umatlas     21794 Nov 27 18:08 stderr.txt
[2025-11-27 18:08:40] HITS file was successfully produced:
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas 916954327 Nov 27 18:05 shared/HITS.pool.root.1
[2025-11-27 18:08:40]  *** Contents of shared directory: ***
[2025-11-27 18:08:40] total 1306892
[2025-11-27 18:08:40] -rw-r--r-- 2 boincer umatlas 410550768 Nov 27 00:03 ATLAS.root_0
[2025-11-27 18:08:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 18:08:40] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 00:03 input.tar.gz
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas 916954327 Nov 27 18:05 HITS.pool.root.1
[2025-11-27 18:08:40] -rw------- 1 boincer umatlas  10127360 Nov 27 18:08 result.tar.gz
18:08:42 (411705): run_atlas exited; CPU time 284289.282769
18:08:42 (411705): called boinc_finish(0)

</stderr_txt>
]]>

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