Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:39:48 (1363785): wrapper (7.7.26015): starting
11:39:48 (1363785): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:39:48] Arguments: --nthreads 8
[2025-11-27 11:39:48] Threads: 8
[2025-11-27 11:39:48] Checking for CVMFS
[2025-11-27 11:39:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:39:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:39:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:39:49] 2.13.2.0 6468 35457 449764 153373 0 414 29996918 40960000 13786 16776704 0 125538274 99.596 136898627 39562 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 11:39:49] CVMFS is ok
[2025-11-27 11:39:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:39:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:39:49] Further information can be found at the LHC@home message board.
[2025-11-27 11:39:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:39:49] Checking for apptainer binary...
[2025-11-27 11:39:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:39:49] Running /usr/bin/apptainer --version
[2025-11-27 11:39:49] apptainer version 1.4.4-1.el9
[2025-11-27 11:39:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:39:50] c-206-41.aglt2.org
[2025-11-27 11:39:50] apptainer works
[2025-11-27 11:39:50] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:39:50] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:39:50] Starting ATLAS job with PandaID=6898177026
[2025-11-27 11:39:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 07:55:12]  *** The last 200 lines of the pilot log: ***
[2025-11-28 07:55:12] 2025-11-28 12:53:58,130 | INFO     | monitor loop #4787: job 0:6898177026 is in state 'finished'
[2025-11-28 07:55:12] 2025-11-28 12:53:58,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:55:12] 2025-11-28 12:53:59,483 | INFO     | time since job start (72780s) is within the limit (172800.0s)
[2025-11-28 07:55:12] 2025-11-28 12:54:00,638 | INFO     | monitor loop #4788: job 0:6898177026 is in state 'finished'
[2025-11-28 07:55:12] 2025-11-28 12:54:00,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:55:12] 2025-11-28 12:54:01,492 | INFO     | time since job start (72782s) is within the limit (172800.0s)
[2025-11-28 07:55:12] 2025-11-28 12:54:03,146 | INFO     | monitor loop #4789: job 0:6898177026 is in state 'finished'
[2025-11-28 07:55:12] 2025-11-28 12:54:03,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:55:12] 2025-11-28 12:54:03,501 | INFO     | time since job start (72784s) is within the limit (172800.0s)
[2025-11-28 07:55:12] 2025-11-28 12:54:05,509 | INFO     | time since job start (72786s) is within the limit (172800.0s)
[2025-11-28 07:55:12] 2025-11-28 12:54:05,653 | INFO     | monitor loop #4790: job 0:6898177026 is in state 'finished'
[2025-11-28 07:55:12] 2025-11-28 12:54:05,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:55:12] 2025-11-28 12:54:07,523 | INFO     | time since job start (72788s) is within the limit (172800.0s)
[2025-11-28 07:55:12] 2025-11-28 12:54:08,162 | INFO     | monitor loop #4791: job 0:6898177026 is in state 'finished'
[2025-11-28 07:55:12] 2025-11-28 12:54:08,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 07:55:12] 2025-11-28 12:54:08,733 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 07:55:12] 2025-11-28 12:54:08,759 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3215.4054375
[2025-11-28 07:55:12] 2025-11-28 12:54:08,807 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898177026/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 07:55:12] 2025-11-28 12:54:08,808 | INFO     | extracted standard info from prmon json
[2025-11-28 07:55:12] 2025-11-28 12:54:08,808 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 07:55:12] 2025-11-28 12:54:08,808 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 07:55:12] 2025-11-28 12:54:08,823 | INFO     | fitting pss+swap vs Time
[2025-11-28 07:55:12] 2025-11-28 12:54:08,824 | INFO     | sum of square deviations: 523854513310.85626
[2025-11-28 07:55:12] 2025-11-28 12:54:08,880 | INFO     | sum of deviations: 2090973109351.0276
[2025-11-28 07:55:12] 2025-11-28 12:54:08,880 | INFO     | mean x: 1764298097.1234257
[2025-11-28 07:55:12] 2025-11-28 12:54:08,881 | INFO     | mean y: 2875042.476070529
[2025-11-28 07:55:12] 2025-11-28 12:54:08,881 | INFO     | intersect: -7039347147.51421
[2025-11-28 07:55:12] 2025-11-28 12:54:08,882 | INFO     | chi2: 27.705957539460403
[2025-11-28 07:55:12] 2025-11-28 12:54:08,892 | INFO     | sum of square deviations: 517285235865.70966
[2025-11-28 07:55:12] 2025-11-28 12:54:08,933 | INFO     | sum of deviations: 2475189816991.8706
[2025-11-28 07:55:12] 2025-11-28 12:54:08,933 | INFO     | mean x: 1764297944.6323776
[2025-11-28 07:55:12] 2025-11-28 12:54:08,933 | INFO     | mean y: 2883959.4148397977
[2025-11-28 07:55:12] 2025-11-28 12:54:08,933 | INFO     | intersect: -8439213366.9960785
[2025-11-28 07:55:12] 2025-11-28 12:54:08,934 | INFO     | chi2: 24.5521503642359
[2025-11-28 07:55:12] 2025-11-28 12:54:08,934 | INFO     | current chi2=24.5521503642359 (change=11.383137257511033 %)
[2025-11-28 07:55:12] 2025-11-28 12:54:08,935 | INFO     | right removable region: 1185
[2025-11-28 07:55:12] 2025-11-28 12:54:08,936 | INFO     | sum of square deviations: 517283693175.7098
[2025-11-28 07:55:12] 2025-11-28 12:54:08,965 | INFO     | sum of deviations: 1596685090655.3455
[2025-11-28 07:55:12] 2025-11-28 12:54:08,965 | INFO     | mean x: 1764298249.6323776
[2025-11-28 07:55:12] 2025-11-28 12:54:08,965 | INFO     | mean y: 2886513.688870152
[2025-11-28 07:55:12] 2025-11-28 12:54:08,966 | INFO     | intersect: -5442923489.257536
[2025-11-28 07:55:12] 2025-11-28 12:54:08,966 | INFO     | chi2: 23.273561650959227
[2025-11-28 07:55:12] 2025-11-28 12:54:08,967 | INFO     | current chi2=23.273561650959227 (change=15.997988454967874 %)
[2025-11-28 07:55:12] 2025-11-28 12:54:08,967 | INFO     | left removable region: 10
[2025-11-28 07:55:12] 2025-11-28 12:54:08,968 | INFO     | sum of square deviations: 503023589321.7311
[2025-11-28 07:55:12] 2025-11-28 12:54:09,029 | INFO     | sum of deviations: 1625448750043.9998
[2025-11-28 07:55:12] 2025-11-28 12:54:09,030 | INFO     | mean x: 1764298219.1523404
[2025-11-28 07:55:12] 2025-11-28 12:54:09,030 | INFO     | mean y: 2907342.564255319
[2025-11-28 07:55:12] 2025-11-28 12:54:09,034 | INFO     | intersect: -5698169894.972238
[2025-11-28 07:55:12] 2025-11-28 12:54:09,035 | INFO     | chi2: 16.29136376270186
[2025-11-28 07:55:12] 2025-11-28 12:54:09,035 | INFO     | current memory leak: 3.23 B/s (using 1175 data points, chi2=16.29)
[2025-11-28 07:55:12] 2025-11-28 12:54:09,036 | INFO     | could have reported an average CPU frequency of 3207 MHz (43 samples)
[2025-11-28 07:55:12] 2025-11-28 12:54:09,036 | INFO     | ..............................
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . Timing measurements:
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . get job = 0 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . initial setup = 5 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . payload setup = 44 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . stage-in = 0 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . payload execution = 72646 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . stage-out = 5 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | . log creation = 1 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,037 | INFO     | ..............................
[2025-11-28 07:55:12] 2025-11-28 12:54:09,250 | INFO     | PID=1376783 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:55:12] 2025-11-28 12:54:09,251 | INFO     | .. there are 23 such processes running
[2025-11-28 07:55:12] 2025-11-28 12:54:09,566 | INFO     | 
[2025-11-28 07:55:12] 2025-11-28 12:54:09,566 | INFO     | job summary report
[2025-11-28 07:55:12] 2025-11-28 12:54:09,566 | INFO     | --------------------------------------------------
[2025-11-28 07:55:12] 2025-11-28 12:54:09,566 | INFO     | PanDA job id: 6898177026
[2025-11-28 07:55:12] 2025-11-28 12:54:09,566 | INFO     | task id: 47556161
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | errors: (none)
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | pilot state: finished 
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | transexitcode: 0
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | exeerrorcode: 0
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | exeerrordiag: 
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | exitcode: 0
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | exitmsg: OK
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | cpuconsumptiontime: 200772 s
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | nevents: 1000
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | neventsw: 0
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | pid: 1385620
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | pgrp: 1385620
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | corecount: 8
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | event service: False
[2025-11-28 07:55:12] 2025-11-28 12:54:09,567 | INFO     | sizes: {0: 2284093, 1: 2284292, 11: 2284292, 23: 2284610, 33: 2284610, 72695: 2344154, 72696: 2344281, 72701: 2353331, 72703: 2353387, 72728: 2353633}
[2025-11-28 07:55:12] 2025-11-28 12:54:09,568 | INFO     | --------------------------------------------------
[2025-11-28 07:55:12] 2025-11-28 12:54:09,568 | INFO     | 
[2025-11-28 07:55:12] 2025-11-28 12:54:09,568 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 07:55:12] 2025-11-28 12:54:09,627 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | job 6898177026 has completed (purged errors)
[2025-11-28 07:55:12] 2025-11-28 12:54:09,629 | INFO     | overall cleanup function is called
[2025-11-28 07:55:12] 2025-11-28 12:54:10,680 | INFO     | --- collectZombieJob: --- 10, [1385620]
[2025-11-28 07:55:12] 2025-11-28 12:54:10,680 | INFO     | zombie collector waiting for pid 1385620
[2025-11-28 07:55:12] 2025-11-28 12:54:10,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 07:55:12] 2025-11-28 12:54:10,680 | INFO     | collected zombie processes
[2025-11-28 07:55:12] 2025-11-28 12:54:10,681 | INFO     | will attempt to kill all subprocesses of pid=1385620
[2025-11-28 07:55:12] 2025-11-28 12:54:11,418 | INFO     | process IDs to be killed: [1385620] (in reverse order)
[2025-11-28 07:55:12] 2025-11-28 12:54:11,762 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 07:55:12] 2025-11-28 12:54:11,763 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 07:55:12] 2025-11-28 12:54:11,791 | INFO     | did not find any defunct processes belonging to 1385620
[2025-11-28 07:55:12] 2025-11-28 12:54:11,812 | INFO     | did not find any defunct processes belonging to 1385620
[2025-11-28 07:55:12] 2025-11-28 12:54:11,814 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 07:55:12] 2025-11-28 12:54:11,814 | INFO     | ready for new job
[2025-11-28 07:55:12] 2025-11-28 12:54:11,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 07:55:12] 2025-11-28 12:54:11,824 | INFO     | ***************************************
[2025-11-28 07:55:12] 2025-11-28 12:54:11,826 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 07:55:12] 2025-11-28 12:54:11,826 | INFO     | ***************************************
[2025-11-28 07:55:12] 2025-11-28 12:54:11,826 | INFO     | 
[2025-11-28 07:55:12] 2025-11-28 12:54:11,832 | INFO     | architecture information:
[2025-11-28 07:55:12] 2025-11-28 12:54:11,834 | INFO     | executing command: cat /etc/os-release
[2025-11-28 07:55:12] 2025-11-28 12:54:11,883 | INFO     | cat /etc/os-release:
[2025-11-28 07:55:12] NAME="CentOS Linux"
[2025-11-28 07:55:12] VERSION="7 (Core)"
[2025-11-28 07:55:12] ID="centos"
[2025-11-28 07:55:12] ID_LIKE="rhel fedora"
[2025-11-28 07:55:12] VERSION_ID="7"
[2025-11-28 07:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 07:55:12] ANSI_COLOR="0;31"
[2025-11-28 07:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 07:55:12] HOME_URL="https://www.centos.org/"
[2025-11-28 07:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 07:55:12] 
[2025-11-28 07:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 07:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 07:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 07:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 07:55:12] 
[2025-11-28 07:55:12] 2025-11-28 12:54:11,884 | INFO     | ***************************************
[2025-11-28 07:55:12] 2025-11-28 12:54:12,389 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 07:55:12] 2025-11-28 12:54:12,478 | INFO     | sufficient remaining disk space (76331089920 B)
[2025-11-28 07:55:12] 2025-11-28 12:54:12,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 07:55:12] 2025-11-28 12:54:12,478 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 07:55:12] 2025-11-28 12:54:12,478 | INFO     | update_server=False
[2025-11-28 07:55:12] 2025-11-28 12:54:12,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 07:55:12] 2025-11-28 12:54:12,478 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:55:12] 2025-11-28 12:54:12,479 | INFO     | aborting loop
[2025-11-28 07:55:12] 2025-11-28 12:54:12,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 07:55:12] 2025-11-28 12:54:12,807 | INFO     | all data control threads have been joined
[2025-11-28 07:55:12] 2025-11-28 12:54:12,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 07:55:12] 2025-11-28 12:54:13,426 | INFO     | all payload control threads have been joined
[2025-11-28 07:55:12] 2025-11-28 12:54:13,484 | INFO     | [job] retrieve thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:13,485 | INFO     | [job] job monitor thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:13,517 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:13,578 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:13,644 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:13,815 | INFO     | [data] control thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,178 | INFO     | all job control threads have been joined
[2025-11-28 07:55:12] 2025-11-28 12:54:14,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 07:55:12] 2025-11-28 12:54:14,432 | INFO     | [payload] control thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,453 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,482 | INFO     | [data] copytool_in thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,733 | INFO     | [payload] failed_post thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,808 | INFO     | [payload] validate_post thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,899 | INFO     | [job] validate thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:14,986 | INFO     | [data] copytool_out thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:15,184 | INFO     | [job] control thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:15,193 | INFO     | [job] queue monitor thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:16,615 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 07:55:12] 2025-11-28 12:54:41,836 | INFO     | PID=1376783 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 07:55:12] 2025-11-28 12:54:41,838 | INFO     | .. there are 23 such processes running
[2025-11-28 07:55:12] 2025-11-28 12:54:41,839 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 07:55:12] 2025-11-28 12:54:41,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 07:55:12] 2025-11-28 12:54:41,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 07:55:12] 2025-11-28 12:55:04,189 | INFO     | [monitor] cgroup control has ended
[2025-11-28 07:55:12] 2025-11-28 12:55:05,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660724066112)>', '<ExcThread(monitor, started 139660223297280)>']
[2025-11-28 07:55:12] 2025-11-28 12:55:05,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 07:55:12] 2025-11-28 12:55:05,985 | INFO     | [monitor] control thread has ended
[2025-11-28 07:55:12] 2025-11-28 12:55:10,977 | INFO     | all workflow threads have been joined
[2025-11-28 07:55:12] 2025-11-28 12:55:10,977 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 07:55:12] 2025-11-28 12:55:10,978 | INFO     | traces error code: 0
[2025-11-28 07:55:12] 2025-11-28 12:55:10,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 07:55:12] 2025-11-28 12:55:11,188 [wrapper] ==== pilot stdout END ====
[2025-11-28 07:55:12] 2025-11-28 12:55:11,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 07:55:12] 2025-11-28 12:55:11,193 [wrapper] pilotpid: 1376783
[2025-11-28 07:55:12] 2025-11-28 12:55:11,197 [wrapper] Pilot exit status: 0
[2025-11-28 07:55:12] 2025-11-28 12:55:11,293 [wrapper] pandaids: 6898177026
[2025-11-28 07:55:12] 2025-11-28 12:55:11,747 [wrapper] cleanup supervisor_pilot 4067778 1376784
[2025-11-28 07:55:12] 2025-11-28 12:55:11,781 [wrapper] Test setup, not cleaning
[2025-11-28 07:55:12] 2025-11-28 12:55:11,817 [wrapper] apfmon messages muted
[2025-11-28 07:55:12] 2025-11-28 12:55:11,840 [wrapper] ==== wrapper stdout END ====
[2025-11-28 07:55:12] 2025-11-28 12:55:11,871 [wrapper] ==== wrapper stderr END ====
[2025-11-28 07:55:12]  *** Error codes and diagnostics ***
[2025-11-28 07:55:12]     "exeErrorCode": 0,
[2025-11-28 07:55:12]     "exeErrorDiag": "",
[2025-11-28 07:55:12]     "pilotErrorCode": 0,
[2025-11-28 07:55:12]     "pilotErrorDiag": "",
[2025-11-28 07:55:12]  *** Listing of results directory ***
[2025-11-28 07:55:12] total 1330224
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 07:55:12] -rwx------. 1 boincer umatlas     36292 Nov 25 23:03 runpilot2-wrapper.sh
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:03 queuedata.json
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas       100 Nov 27 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 07:55:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 11:39 run_atlas
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas       105 Nov 27 11:39 job.xml
[2025-11-28 07:55:12] -rw-r--r--. 2 boincer umatlas 411346152 Nov 27 11:39 EVNT.47483658._002465.pool.root.1
[2025-11-28 07:55:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:39 start_atlas.sh
[2025-11-28 07:55:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 11:39 shared
[2025-11-28 07:55:12] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 11:39 input.tar.gz
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas         0 Nov 27 11:39 boinc_lockfile
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 11:39 pandaJob.out
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas        57 Nov 27 11:39 setup.sh.local
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas    991572 Nov 27 11:40 agis_schedconf.cvmfs.json
[2025-11-28 07:55:12] drwx------. 5 boincer umatlas      4096 Nov 27 11:40 pilot3
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas       533 Nov 28 07:14 boinc_task_state.xml
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas      6903 Nov 28 07:49 init_data.xml
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas 922784619 Nov 28 07:52 HITS.47556161._004478.pool.root.1
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas      1051 Nov 28 07:53 memory_monitor_summary.json
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas   1516240 Nov 28 07:53 agis_ddmendpoints.agis.ALL.json
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas   2334813 Nov 28 07:53 log.47556161._004478.job.log.tgz.1
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas      8582 Nov 28 07:54 heartbeat.json
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas        95 Nov 28 07:54 pilot_heartbeat.json
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas        29 Nov 28 07:55 wrapper_checkpoint.txt
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas      4824 Nov 28 07:55 pilotlog.txt
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas   9712076 Nov 28 07:55 log.47556161._004478.job.log.1
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 07:55 boinc_mmap_file
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas       353 Nov 28 07:55 output.list
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas       620 Nov 28 07:55 runtime_log
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas  12062720 Nov 28 07:55 result.tar.gz
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 07:55 runtime_log.err
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas       660 Nov 28 07:55 CGPLDmovLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKtJKDm5LCZSn.diag
[2025-11-28 07:55:12] -rw-r--r--. 1 boincer umatlas     21879 Nov 28 07:55 stderr.txt
[2025-11-28 07:55:12] HITS file was successfully produced:
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas 922784619 Nov 28 07:52 shared/HITS.pool.root.1
[2025-11-28 07:55:12]  *** Contents of shared directory: ***
[2025-11-28 07:55:12] total 1315252
[2025-11-28 07:55:12] -rw-r--r--. 2 boincer umatlas 411346152 Nov 27 11:39 ATLAS.root_0
[2025-11-28 07:55:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 11:39 start_atlas.sh
[2025-11-28 07:55:12] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 11:39 input.tar.gz
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas 922784619 Nov 28 07:52 HITS.pool.root.1
[2025-11-28 07:55:12] -rw-------. 1 boincer umatlas  12062720 Nov 28 07:55 result.tar.gz
07:55:34 (1363785): run_atlas exited; CPU time 201129.893788
07:55:34 (1363785): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN