Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:08 (3806442): wrapper (7.7.26015): starting
00:04:08 (3806442): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:04:08] Arguments: --nthreads 8
[2025-11-27 00:04:08] Threads: 8
[2025-11-27 00:04:08] Checking for CVMFS
[2025-11-27 00:04:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:09] 2.13.2.0 14352 35363 225656 153347 0 524 35917230 40960001 26468 16776704 0 275904847 99.679 222611868 48624 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:04:09] CVMFS is ok
[2025-11-27 00:04:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:09] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:09] Checking for apptainer binary...
[2025-11-27 00:04:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:09] Running /usr/bin/apptainer --version
[2025-11-27 00:04:09] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:10] c-208-36.aglt2.org
[2025-11-27 00:04:10] apptainer works
[2025-11-27 00:04:10] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:04:10] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:04:10] Starting ATLAS job with PandaID=6898177489
[2025-11-27 00:04:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:59:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:59:19] 2025-11-27 17:58:22,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:59:19] 2025-11-27 17:58:23,127 | INFO     | time since job start (46353s) is within the limit (172800.0s)
[2025-11-27 12:59:19] 2025-11-27 17:58:24,939 | INFO     | monitor loop #2833: job 0:6898177489 is in state 'finished'
[2025-11-27 12:59:19] 2025-11-27 17:58:24,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:59:19] 2025-11-27 17:58:25,134 | INFO     | time since job start (46355s) is within the limit (172800.0s)
[2025-11-27 12:59:19] 2025-11-27 17:58:27,141 | INFO     | time since job start (46357s) is within the limit (172800.0s)
[2025-11-27 12:59:19] 2025-11-27 17:58:27,448 | INFO     | monitor loop #2834: job 0:6898177489 is in state 'finished'
[2025-11-27 12:59:19] 2025-11-27 17:58:27,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:59:19] 2025-11-27 17:58:29,151 | INFO     | time since job start (46359s) is within the limit (172800.0s)
[2025-11-27 12:59:19] 2025-11-27 17:58:29,954 | INFO     | monitor loop #2835: job 0:6898177489 is in state 'finished'
[2025-11-27 12:59:19] 2025-11-27 17:58:29,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:59:19] 2025-11-27 17:58:31,157 | INFO     | time since job start (46361s) is within the limit (172800.0s)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,463 | INFO     | monitor loop #2836: job 0:6898177489 is in state 'finished'
[2025-11-27 12:59:19] 2025-11-27 17:58:32,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,756 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 12:59:19] 2025-11-27 17:58:32,764 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3733.7332421875008
[2025-11-27 12:59:19] 2025-11-27 17:58:32,791 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6898177489/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,792 | INFO     | extracted standard info from prmon json
[2025-11-27 12:59:19] 2025-11-27 17:58:32,792 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:59:19] 2025-11-27 17:58:32,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:59:19] 2025-11-27 17:58:32,827 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:59:19] 2025-11-27 17:58:32,828 | INFO     | sum of square deviations: 133978808666.74455
[2025-11-27 12:59:19] 2025-11-27 17:58:32,868 | INFO     | sum of deviations: 1295017103909.988
[2025-11-27 12:59:19] 2025-11-27 17:58:32,868 | INFO     | mean x: 1764243212.7473545
[2025-11-27 12:59:19] 2025-11-27 17:58:32,868 | INFO     | mean y: 2757481.6177248675
[2025-11-27 12:59:19] 2025-11-27 17:58:32,868 | INFO     | intersect: -17050126916.30149
[2025-11-27 12:59:19] 2025-11-27 17:58:32,869 | INFO     | chi2: 18.08881799772133
[2025-11-27 12:59:19] 2025-11-27 17:58:32,870 | INFO     | sum of square deviations: 131338283968.91434
[2025-11-27 12:59:19] 2025-11-27 17:58:32,899 | INFO     | sum of deviations: 1539712699361.166
[2025-11-27 12:59:19] 2025-11-27 17:58:32,900 | INFO     | mean x: 1764243060.255659
[2025-11-27 12:59:19] 2025-11-27 17:58:32,900 | INFO     | mean y: 2771608.608521971
[2025-11-27 12:59:19] 2025-11-27 17:58:32,900 | INFO     | intersect: -20679906454.08324
[2025-11-27 12:59:19] 2025-11-27 17:58:32,900 | INFO     | chi2: 14.796809924113594
[2025-11-27 12:59:19] 2025-11-27 17:58:32,900 | INFO     | current chi2=14.796809924113594 (change=18.19913315520358 %)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,900 | INFO     | right removable region: 750
[2025-11-27 12:59:19] 2025-11-27 17:58:32,925 | INFO     | sum of square deviations: 131337708738.91441
[2025-11-27 12:59:19] 2025-11-27 17:58:32,955 | INFO     | sum of deviations: 995973346787.1475
[2025-11-27 12:59:19] 2025-11-27 17:58:32,955 | INFO     | mean x: 1764243365.255659
[2025-11-27 12:59:19] 2025-11-27 17:58:32,955 | INFO     | mean y: 2774746.0825565914
[2025-11-27 12:59:19] 2025-11-27 17:58:32,955 | INFO     | intersect: -13376013310.390299
[2025-11-27 12:59:19] 2025-11-27 17:58:32,960 | INFO     | chi2: 13.585273112918614
[2025-11-27 12:59:19] 2025-11-27 17:58:32,960 | INFO     | current chi2=13.585273112918614 (change=24.896844478008635 %)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,960 | INFO     | left removable region: 10
[2025-11-27 12:59:19] 2025-11-27 17:58:32,960 | INFO     | sum of square deviations: 125650608449.31128
[2025-11-27 12:59:19] 2025-11-27 17:58:32,971 | INFO     | sum of deviations: 1024626122398.8529
[2025-11-27 12:59:19] 2025-11-27 17:58:32,971 | INFO     | mean x: 1764243334.7743244
[2025-11-27 12:59:19] 2025-11-27 17:58:32,971 | INFO     | mean y: 2808465.8554054056
[2025-11-27 12:59:19] 2025-11-27 17:58:32,971 | INFO     | intersect: -14383829445.309807
[2025-11-27 12:59:19] 2025-11-27 17:58:32,976 | INFO     | chi2: 5.83738156317345
[2025-11-27 12:59:19] 2025-11-27 17:58:32,976 | INFO     | current memory leak: 8.15 B/s (using 740 data points, chi2=5.84)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | could have reported an average CPU frequency of 3778 MHz (29 samples)
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | ..............................
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . Timing measurements:
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . get job = 0 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . initial setup = 4 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . payload setup = 72 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . stage-in = 0 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . payload execution = 46134 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,977 | INFO     | . stage-out = 8 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,978 | INFO     | . log creation = 3 s
[2025-11-27 12:59:19] 2025-11-27 17:58:32,978 | INFO     | ..............................
[2025-11-27 12:59:19] 2025-11-27 17:58:33,089 | INFO     | 
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | job summary report
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | --------------------------------------------------
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | PanDA job id: 6898177489
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | task id: 47556161
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | errors: (none)
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | pilot state: finished 
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | transexitcode: 0
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | exeerrorcode: 0
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | exeerrordiag: 
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | exitcode: 0
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | exitmsg: OK
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | cpuconsumptiontime: 141279 s
[2025-11-27 12:59:19] 2025-11-27 17:58:33,091 | INFO     | nevents: 1000
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | neventsw: 0
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | pid: 3932234
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | pgrp: 3932234
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | corecount: 8
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | event service: False
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | sizes: {0: 2284032, 1: 2284287, 12: 2284287, 23: 2284315, 33: 2284343, 44: 2284399, 46: 2284817, 55: 2284845, 46211: 2331106, 46219: 2340102, 46222: 2340158, 46254
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | --------------------------------------------------
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | 
[2025-11-27 12:59:19] 2025-11-27 17:58:33,092 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-11-27 12:59:19] 2025-11-27 17:58:33,165 | INFO     | time since job start (46363s) is within the limit (172800.0s)
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | job 6898177489 has completed (purged errors)
[2025-11-27 12:59:19] 2025-11-27 17:58:33,279 | INFO     | overall cleanup function is called
[2025-11-27 12:59:19] 2025-11-27 17:58:34,341 | INFO     | --- collectZombieJob: --- 10, [3932234]
[2025-11-27 12:59:19] 2025-11-27 17:58:34,341 | INFO     | zombie collector waiting for pid 3932234
[2025-11-27 12:59:19] 2025-11-27 17:58:34,341 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:59:19] 2025-11-27 17:58:34,341 | INFO     | collected zombie processes
[2025-11-27 12:59:19] 2025-11-27 17:58:34,341 | INFO     | will attempt to kill all subprocesses of pid=3932234
[2025-11-27 12:59:19] 2025-11-27 17:58:35,757 | INFO     | process IDs to be killed: [3932234] (in reverse order)
[2025-11-27 12:59:19] 2025-11-27 17:58:36,084 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:59:19] 2025-11-27 17:58:36,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:59:19] 2025-11-27 17:58:36,273 | INFO     | did not find any defunct processes belonging to 3932234
[2025-11-27 12:59:19] 2025-11-27 17:58:36,469 | INFO     | did not find any defunct processes belonging to 3932234
[2025-11-27 12:59:19] 2025-11-27 17:58:36,529 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:59:19] 2025-11-27 17:58:36,529 | INFO     | ready for new job
[2025-11-27 12:59:19] 2025-11-27 17:58:36,529 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:59:19] 2025-11-27 17:58:36,532 | INFO     | ***************************************
[2025-11-27 12:59:19] 2025-11-27 17:58:36,532 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:59:19] 2025-11-27 17:58:36,532 | INFO     | ***************************************
[2025-11-27 12:59:19] 2025-11-27 17:58:36,532 | INFO     | 
[2025-11-27 12:59:19] 2025-11-27 17:58:36,605 | INFO     | architecture information:
[2025-11-27 12:59:19] 2025-11-27 17:58:36,649 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:59:19] 2025-11-27 17:58:36,748 | INFO     | cat /etc/os-release:
[2025-11-27 12:59:19] NAME="CentOS Linux"
[2025-11-27 12:59:19] VERSION="7 (Core)"
[2025-11-27 12:59:19] ID="centos"
[2025-11-27 12:59:19] ID_LIKE="rhel fedora"
[2025-11-27 12:59:19] VERSION_ID="7"
[2025-11-27 12:59:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:59:19] ANSI_COLOR="0;31"
[2025-11-27 12:59:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:59:19] HOME_URL="https://www.centos.org/"
[2025-11-27 12:59:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:59:19] 
[2025-11-27 12:59:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:59:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:59:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:59:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:59:19] 
[2025-11-27 12:59:19] 2025-11-27 17:58:36,748 | INFO     | ***************************************
[2025-11-27 12:59:19] 2025-11-27 17:58:37,252 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-11-27 12:59:19] 2025-11-27 17:58:37,331 | INFO     | sufficient remaining disk space (159041716224 B)
[2025-11-27 12:59:19] 2025-11-27 17:58:37,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:59:19] 2025-11-27 17:58:37,332 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:59:19] 2025-11-27 17:58:37,332 | INFO     | update_server=False
[2025-11-27 12:59:19] 2025-11-27 17:58:37,332 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:59:19] 2025-11-27 17:58:37,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:59:19] 2025-11-27 17:58:37,490 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 12:59:19] 2025-11-27 17:58:37,490 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 12:59:19] 2025-11-27 17:58:37,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:59:19] 2025-11-27 17:58:37,490 | INFO     | will abort loop
[2025-11-27 12:59:19] 2025-11-27 17:58:37,954 | INFO     | all payload control threads have been joined
[2025-11-27 12:59:19] 2025-11-27 17:58:37,954 | INFO     | all data control threads have been joined
[2025-11-27 12:59:19] 2025-11-27 17:58:38,055 | INFO     | all job control threads have been joined
[2025-11-27 12:59:19] 2025-11-27 17:58:38,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:59:19] 2025-11-27 17:58:38,338 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:38,388 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:38,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:59:19] 2025-11-27 17:58:38,496 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:38,711 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:38,960 | INFO     | [payload] control thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:38,960 | INFO     | [data] control thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,066 | INFO     | [job] control thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,132 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,261 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,339 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,470 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,474 | INFO     | [job] validate thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,542 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,542 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:39,548 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:58:42,481 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:59:19] 2025-11-27 17:59:07,795 | INFO     | PID=3844335 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:59:19] 2025-11-27 17:59:07,795 | INFO     | .. there are 33 such processes running
[2025-11-27 12:59:19] 2025-11-27 17:59:07,796 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:59:19] 2025-11-27 17:59:07,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:59:19] 2025-11-27 17:59:07,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:59:19] 2025-11-27 17:59:10,797 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:59:19] 2025-11-27 17:59:11,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912103446336)>', '<ExcThread(monitor, started 139911738926848)>']
[2025-11-27 12:59:19] 2025-11-27 17:59:11,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:59:19] 2025-11-27 17:59:11,836 | INFO     | [monitor] control thread has ended
[2025-11-27 12:59:19] 2025-11-27 17:59:16,709 | INFO     | all workflow threads have been joined
[2025-11-27 12:59:19] 2025-11-27 17:59:16,709 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:59:19] 2025-11-27 17:59:16,709 | INFO     | traces error code: 0
[2025-11-27 12:59:19] 2025-11-27 17:59:16,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:59:19] 2025-11-27 17:59:17,953 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:59:19] 2025-11-27 17:59:18,000 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:59:19] 2025-11-27 17:59:18,017 [wrapper] pilotpid: 3844335
[2025-11-27 12:59:19] 2025-11-27 17:59:18,100 [wrapper] Pilot exit status: 0
[2025-11-27 12:59:19] 2025-11-27 17:59:18,194 [wrapper] pandaids: 6898177489
[2025-11-27 12:59:19] 2025-11-27 17:59:18,783 [wrapper] cleanup supervisor_pilot 4114661 3844336
[2025-11-27 12:59:19] 2025-11-27 17:59:18,805 [wrapper] Test setup, not cleaning
[2025-11-27 12:59:19] 2025-11-27 17:59:18,818 [wrapper] apfmon messages muted
[2025-11-27 12:59:19] 2025-11-27 17:59:18,832 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:59:19] 2025-11-27 17:59:18,846 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:59:19]  *** Error codes and diagnostics ***
[2025-11-27 12:59:19]     "exeErrorCode": 0,
[2025-11-27 12:59:19]     "exeErrorDiag": "",
[2025-11-27 12:59:19]     "pilotErrorCode": 0,
[2025-11-27 12:59:19]     "pilotErrorDiag": "",
[2025-11-27 12:59:19]  *** Listing of results directory ***
[2025-11-27 12:59:19] total 1315216
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 12:59:19] -rwx------. 1 boincer umatlas     36292 Nov 25 23:03 runpilot2-wrapper.sh
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:03 queuedata.json
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:59:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 12:59:19] -rw-r--r--. 2 boincer umatlas 410578874 Nov 27 00:04 EVNT.47483658._002468.pool.root.1
[2025-11-27 12:59:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 12:59:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 12:59:19] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:04 input.tar.gz
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 00:04 pandaJob.out
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 12:59:19] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:38 boinc_task_state.xml
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas 916468029 Nov 27 12:57 HITS.47556161._004501.pool.root.1
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas      1084 Nov 27 12:57 memory_monitor_summary.json
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas   1962215 Nov 27 12:57 log.47556161._004501.job.log.tgz.1
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas      8619 Nov 27 12:58 heartbeat.json
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas        95 Nov 27 12:58 pilot_heartbeat.json
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 12:58 init_data.xml
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas      5012 Nov 27 12:59 pilotlog.txt
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:59 wrapper_checkpoint.txt
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:59 boinc_mmap_file
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas   5942366 Nov 27 12:59 log.47556161._004501.job.log.1
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas       353 Nov 27 12:59 output.list
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:59 runtime_log
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas   7925760 Nov 27 12:59 result.tar.gz
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas      9361 Nov 27 12:59 runtime_log.err
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas       665 Nov 27 12:59 eyXLDmovLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPtJKDmiBHY8m.diag
[2025-11-27 12:59:19] -rw-r--r--. 1 boincer umatlas     21814 Nov 27 12:59 stderr.txt
[2025-11-27 12:59:19] HITS file was successfully produced:
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas 916468029 Nov 27 12:57 shared/HITS.pool.root.1
[2025-11-27 12:59:19]  *** Contents of shared directory: ***
[2025-11-27 12:59:19] total 1304292
[2025-11-27 12:59:19] -rw-r--r--. 2 boincer umatlas 410578874 Nov 27 00:04 ATLAS.root_0
[2025-11-27 12:59:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 12:59:19] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:04 input.tar.gz
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas 916468029 Nov 27 12:57 HITS.pool.root.1
[2025-11-27 12:59:19] -rw-------. 1 boincer umatlas   7925760 Nov 27 12:59 result.tar.gz
12:59:21 (3806442): run_atlas exited; CPU time 142047.286374
12:59:21 (3806442): called boinc_finish(0)

</stderr_txt>
]]>

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