Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:22 (463964): wrapper (7.7.26015): starting
00:03:22 (463964): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:03:22] Arguments: --nthreads 9
[2025-11-27 00:03:22] Threads: 9
[2025-11-27 00:03:22] Checking for CVMFS
[2025-11-27 00:03:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:25] 2.13.3.0 10121 30997 435596 153347 0 617 28339096 32935936 76248 16776704 0 351251143 99.785 183015124 27427 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:03:25] CVMFS is ok
[2025-11-27 00:03:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:25] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:25] Checking for apptainer binary...
[2025-11-27 00:03:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:25] Running /usr/bin/apptainer --version
[2025-11-27 00:03:25] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:25] lc-10-11.aglt2.org
[2025-11-27 00:03:25] apptainer works
[2025-11-27 00:03:25] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:03:25] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:03:26] Starting ATLAS job with PandaID=6898177913
[2025-11-27 00:03:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:20:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:20:51] 2025-11-27 23:19:55,497 | INFO     | monitor loop #3318: job 0:6898177913 is in state 'finished'
[2025-11-27 18:20:51] 2025-11-27 23:19:55,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:20:51] 2025-11-27 23:19:55,919 | INFO     | time since job start (65717s) is within the limit (172800.0s)
[2025-11-27 18:20:51] 2025-11-27 23:19:57,926 | INFO     | time since job start (65719s) is within the limit (172800.0s)
[2025-11-27 18:20:51] 2025-11-27 23:19:58,002 | INFO     | monitor loop #3319: job 0:6898177913 is in state 'finished'
[2025-11-27 18:20:51] 2025-11-27 23:19:58,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:20:51] 2025-11-27 23:19:59,933 | INFO     | time since job start (65721s) is within the limit (172800.0s)
[2025-11-27 18:20:51] 2025-11-27 23:20:00,507 | INFO     | monitor loop #3320: job 0:6898177913 is in state 'finished'
[2025-11-27 18:20:51] 2025-11-27 23:20:00,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:20:51] 2025-11-27 23:20:01,940 | INFO     | time since job start (65723s) is within the limit (172800.0s)
[2025-11-27 18:20:51] 2025-11-27 23:20:03,049 | INFO     | monitor loop #3321: job 0:6898177913 is in state 'finished'
[2025-11-27 18:20:51] 2025-11-27 23:20:03,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:20:51] 2025-11-27 23:20:03,948 | INFO     | time since job start (65725s) is within the limit (172800.0s)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,056 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:20:51] 2025-11-27 23:20:05,103 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2698.2151249999997
[2025-11-27 18:20:51] 2025-11-27 23:20:05,179 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6898177913/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,185 | INFO     | extracted standard info from prmon json
[2025-11-27 18:20:51] 2025-11-27 23:20:05,185 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:20:51] 2025-11-27 23:20:05,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:20:51] 2025-11-27 23:20:05,279 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:20:51] 2025-11-27 23:20:05,285 | INFO     | sum of square deviations: 384130744739.1895
[2025-11-27 18:20:51] 2025-11-27 23:20:05,337 | INFO     | sum of deviations: 1979270839056.8047
[2025-11-27 18:20:51] 2025-11-27 23:20:05,337 | INFO     | mean x: 1764252771.926443
[2025-11-27 18:20:51] 2025-11-27 23:20:05,337 | INFO     | mean y: 2990135.288640596
[2025-11-27 18:20:51] 2025-11-27 23:20:05,337 | INFO     | intersect: -9087493019.268639
[2025-11-27 18:20:51] 2025-11-27 23:20:05,339 | INFO     | chi2: 20.872439772987693
[2025-11-27 18:20:51] 2025-11-27 23:20:05,340 | INFO     | sum of square deviations: 378791701837.71173
[2025-11-27 18:20:51] 2025-11-27 23:20:05,449 | INFO     | sum of deviations: 2355510868818.4233
[2025-11-27 18:20:51] 2025-11-27 23:20:05,449 | INFO     | mean x: 1764252619.4424696
[2025-11-27 18:20:51] 2025-11-27 23:20:05,450 | INFO     | mean y: 3000878.990645463
[2025-11-27 18:20:51] 2025-11-27 23:20:05,451 | INFO     | intersect: -10967979214.492426
[2025-11-27 18:20:51] 2025-11-27 23:20:05,452 | INFO     | chi2: 17.581062131473963
[2025-11-27 18:20:51] 2025-11-27 23:20:05,482 | INFO     | current chi2=17.581062131473963 (change=15.769012522308504 %)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,482 | INFO     | right removable region: 1068
[2025-11-27 18:20:51] 2025-11-27 23:20:05,484 | INFO     | sum of square deviations: 378789457037.7114
[2025-11-27 18:20:51] 2025-11-27 23:20:05,562 | INFO     | sum of deviations: 1535967057061.0623
[2025-11-27 18:20:51] 2025-11-27 23:20:05,579 | INFO     | mean x: 1764252924.4424696
[2025-11-27 18:20:51] 2025-11-27 23:20:05,579 | INFO     | mean y: 3002790.9766136575
[2025-11-27 18:20:51] 2025-11-27 23:20:05,579 | INFO     | intersect: -7150930144.378257
[2025-11-27 18:20:51] 2025-11-27 23:20:05,581 | INFO     | chi2: 16.787959642882935
[2025-11-27 18:20:51] 2025-11-27 23:20:05,581 | INFO     | current chi2=16.787959642882935 (change=19.56877190461814 %)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,581 | INFO     | left removable region: 10
[2025-11-27 18:20:51] 2025-11-27 23:20:05,583 | INFO     | sum of square deviations: 367215946767.4555
[2025-11-27 18:20:51] 2025-11-27 23:20:05,664 | INFO     | monitor loop #3322: job 0:6898177913 is in state 'finished'
[2025-11-27 18:20:51] 2025-11-27 23:20:05,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,674 | INFO     | sum of deviations: 1583739431449.3796
[2025-11-27 18:20:51] 2025-11-27 23:20:05,723 | INFO     | mean x: 1764252893.9773157
[2025-11-27 18:20:51] 2025-11-27 23:20:05,723 | INFO     | mean y: 3027409.6824196596
[2025-11-27 18:20:51] 2025-11-27 23:20:05,723 | INFO     | intersect: -7605892899.570842
[2025-11-27 18:20:51] 2025-11-27 23:20:05,724 | INFO     | chi2: 9.578412507010592
[2025-11-27 18:20:51] 2025-11-27 23:20:05,724 | INFO     | current memory leak: 4.31 B/s (using 1058 data points, chi2=9.58)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | could have reported an average CPU frequency of 2697 MHz (39 samples)
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | ..............................
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . Timing measurements:
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . get job = 0 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . initial setup = 4 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . payload setup = 49 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . stage-in = 0 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . payload execution = 65533 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . stage-out = 15 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | . log creation = 1 s
[2025-11-27 18:20:51] 2025-11-27 23:20:05,727 | INFO     | ..............................
[2025-11-27 18:20:51] 2025-11-27 23:20:06,067 | INFO     | 
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | job summary report
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | --------------------------------------------------
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | PanDA job id: 6898177913
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | task id: 47556161
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | errors: (none)
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | pilot state: finished 
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | transexitcode: 0
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | exeerrorcode: 0
[2025-11-27 18:20:51] 2025-11-27 23:20:06,068 | INFO     | exeerrordiag: 
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | exitcode: 0
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | exitmsg: OK
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | cpuconsumptiontime: 260126 s
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | nevents: 1000
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | neventsw: 0
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | pid: 493532
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | pgrp: 493532
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | corecount: 9
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | event service: False
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284292, 13: 2284320, 24: 2284376, 35: 2284404, 38: 2284822, 46: 2284850, 65589: 2339456, 65590: 2339455, 65605: 2348533, 65609:
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | --------------------------------------------------
[2025-11-27 18:20:51] 2025-11-27 23:20:06,069 | INFO     | 
[2025-11-27 18:20:51] 2025-11-27 23:20:06,070 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 18:20:51] 2025-11-27 23:20:06,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,412 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:20:51] 2025-11-27 23:20:06,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,412 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:20:51] 2025-11-27 23:20:06,412 | INFO     | job 6898177913 has completed (purged errors)
[2025-11-27 18:20:51] 2025-11-27 23:20:06,412 | INFO     | overall cleanup function is called
[2025-11-27 18:20:51] 2025-11-27 23:20:07,535 | INFO     | --- collectZombieJob: --- 10, [493532]
[2025-11-27 18:20:51] 2025-11-27 23:20:07,536 | INFO     | zombie collector waiting for pid 493532
[2025-11-27 18:20:51] 2025-11-27 23:20:07,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:20:51] 2025-11-27 23:20:07,536 | INFO     | collected zombie processes
[2025-11-27 18:20:51] 2025-11-27 23:20:07,536 | INFO     | will attempt to kill all subprocesses of pid=493532
[2025-11-27 18:20:51] 2025-11-27 23:20:10,357 | INFO     | PID=473075 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:20:51] 2025-11-27 23:20:10,357 | INFO     | .. there are 90 such processes running
[2025-11-27 18:20:51] 2025-11-27 23:20:11,102 | INFO     | process IDs to be killed: [493532] (in reverse order)
[2025-11-27 18:20:51] 2025-11-27 23:20:11,829 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:20:51] 2025-11-27 23:20:11,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:20:51] 2025-11-27 23:20:11,866 | INFO     | did not find any defunct processes belonging to 493532
[2025-11-27 18:20:51] 2025-11-27 23:20:11,901 | INFO     | did not find any defunct processes belonging to 493532
[2025-11-27 18:20:51] 2025-11-27 23:20:11,925 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:20:51] 2025-11-27 23:20:11,927 | INFO     | ready for new job
[2025-11-27 18:20:51] 2025-11-27 23:20:11,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:20:51] 2025-11-27 23:20:11,936 | INFO     | ***************************************
[2025-11-27 18:20:51] 2025-11-27 23:20:11,942 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:20:51] 2025-11-27 23:20:11,943 | INFO     | ***************************************
[2025-11-27 18:20:51] 2025-11-27 23:20:11,943 | INFO     | 
[2025-11-27 18:20:51] 2025-11-27 23:20:11,952 | INFO     | architecture information:
[2025-11-27 18:20:51] 2025-11-27 23:20:11,959 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:20:51] 2025-11-27 23:20:12,015 | INFO     | cat /etc/os-release:
[2025-11-27 18:20:51] NAME="CentOS Linux"
[2025-11-27 18:20:51] VERSION="7 (Core)"
[2025-11-27 18:20:51] ID="centos"
[2025-11-27 18:20:51] ID_LIKE="rhel fedora"
[2025-11-27 18:20:51] VERSION_ID="7"
[2025-11-27 18:20:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:20:51] ANSI_COLOR="0;31"
[2025-11-27 18:20:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:20:51] HOME_URL="https://www.centos.org/"
[2025-11-27 18:20:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:20:51] 
[2025-11-27 18:20:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:20:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:20:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:20:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:20:51] 
[2025-11-27 18:20:51] 2025-11-27 23:20:12,016 | INFO     | ***************************************
[2025-11-27 18:20:51] 2025-11-27 23:20:12,519 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 18:20:51] 2025-11-27 23:20:12,643 | INFO     | sufficient remaining disk space (87219503104 B)
[2025-11-27 18:20:51] 2025-11-27 23:20:12,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:20:51] 2025-11-27 23:20:12,647 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:20:51] 2025-11-27 23:20:12,647 | INFO     | update_server=False
[2025-11-27 18:20:51] 2025-11-27 23:20:12,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:20:51] 2025-11-27 23:20:12,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:20:51] 2025-11-27 23:20:12,649 | INFO     | aborting loop
[2025-11-27 18:20:51] 2025-11-27 23:20:12,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:20:51] 2025-11-27 23:20:13,137 | INFO     | all job control threads have been joined
[2025-11-27 18:20:51] 2025-11-27 23:20:13,363 | INFO     | all payload control threads have been joined
[2025-11-27 18:20:51] 2025-11-27 23:20:13,653 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:13,654 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:13,663 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:13,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:13,727 | INFO     | all data control threads have been joined
[2025-11-27 18:20:51] 2025-11-27 23:20:13,789 | INFO     | [job] validate thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:13,790 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,143 | INFO     | [job] control thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,149 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,369 | INFO     | [payload] control thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,413 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:20:51] 2025-11-27 23:20:14,733 | INFO     | [data] control thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,777 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,834 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:14,837 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:15,175 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:20:51] 2025-11-27 23:20:16,181 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:18,507 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:20:51] 2025-11-27 23:20:41,679 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:20:51] 2025-11-27 23:20:42,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897558751040)>', '<ExcThread(monitor, started 139896899475200)>']
[2025-11-27 18:20:51] 2025-11-27 23:20:45,099 | INFO     | PID=473075 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:20:51] 2025-11-27 23:20:45,100 | INFO     | .. there are 90 such processes running
[2025-11-27 18:20:51] 2025-11-27 23:20:45,101 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:20:51] 2025-11-27 23:20:45,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:20:51] 2025-11-27 23:20:45,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:20:51] 2025-11-27 23:20:45,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:20:51] 2025-11-27 23:20:45,108 | INFO     | [monitor] control thread has ended
[2025-11-27 18:20:51] 2025-11-27 23:20:47,636 | INFO     | all workflow threads have been joined
[2025-11-27 18:20:51] 2025-11-27 23:20:47,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:20:51] 2025-11-27 23:20:47,637 | INFO     | traces error code: 0
[2025-11-27 18:20:51] 2025-11-27 23:20:47,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:20:51] 2025-11-27 23:20:48,547 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:20:51] 2025-11-27 23:20:48,571 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:20:51] 2025-11-27 23:20:48,581 [wrapper] pilotpid: 473075
[2025-11-27 18:20:51] 2025-11-27 23:20:48,596 [wrapper] Pilot exit status: 0
[2025-11-27 18:20:51] 2025-11-27 23:20:48,675 [wrapper] pandaids: 6898177913
[2025-11-27 18:20:51] 2025-11-27 23:20:49,909 [wrapper] cleanup supervisor_pilot 4022356 473076
[2025-11-27 18:20:51] 2025-11-27 23:20:49,930 [wrapper] Test setup, not cleaning
[2025-11-27 18:20:51] 2025-11-27 23:20:49,952 [wrapper] apfmon messages muted
[2025-11-27 18:20:51] 2025-11-27 23:20:50,012 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:20:51] 2025-11-27 23:20:50,046 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:20:51]  *** Error codes and diagnostics ***
[2025-11-27 18:20:51]     "exeErrorCode": 0,
[2025-11-27 18:20:51]     "exeErrorDiag": "",
[2025-11-27 18:20:51]     "pilotErrorCode": 0,
[2025-11-27 18:20:51]     "pilotErrorDiag": "",
[2025-11-27 18:20:51]  *** Listing of results directory ***
[2025-11-27 18:20:51] total 1321096
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 18:20:51] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:20:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 18:20:51] -rw-r--r--. 2 boincer umatlas 409077945 Nov 27 00:03 EVNT.47483658._002471.pool.root.1
[2025-11-27 18:20:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 18:20:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 18:20:51] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:03 input.tar.gz
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:03 pandaJob.out
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 18:20:51] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:52 boinc_task_state.xml
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas      6888 Nov 27 18:11 init_data.xml
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas 920242573 Nov 27 18:17 HITS.47556161._004540.pool.root.1
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas      1058 Nov 27 18:19 memory_monitor_summary.json
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas   2264210 Nov 27 18:19 log.47556161._004540.job.log.tgz.1
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas      8629 Nov 27 18:20 heartbeat.json
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas        95 Nov 27 18:20 pilot_heartbeat.json
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas      4823 Nov 27 18:20 pilotlog.txt
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:20 wrapper_checkpoint.txt
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas   7516154 Nov 27 18:20 log.47556161._004540.job.log.1
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas       353 Nov 27 18:20 output.list
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:20 runtime_log
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:20 boinc_mmap_file
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas   9799680 Nov 27 18:20 result.tar.gz
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas       660 Nov 27 18:20 XoWLDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSvMKDm1Yx01n.diag
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 18:20 runtime_log.err
[2025-11-27 18:20:51] -rw-r--r--. 1 boincer umatlas     21890 Nov 27 18:20 stderr.txt
[2025-11-27 18:20:51] HITS file was successfully produced:
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas 920242573 Nov 27 18:17 shared/HITS.pool.root.1
[2025-11-27 18:20:51]  *** Contents of shared directory: ***
[2025-11-27 18:20:51] total 1308344
[2025-11-27 18:20:51] -rw-r--r--. 2 boincer umatlas 409077945 Nov 27 00:03 ATLAS.root_0
[2025-11-27 18:20:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 18:20:51] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:03 input.tar.gz
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas 920242573 Nov 27 18:17 HITS.pool.root.1
[2025-11-27 18:20:51] -rw-------. 1 boincer umatlas   9799680 Nov 27 18:20 result.tar.gz
18:20:52 (463964): run_atlas exited; CPU time 263550.657162
18:20:52 (463964): called boinc_finish(0)

</stderr_txt>
]]>

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