Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:09 (846638): wrapper (7.7.26015): starting
00:04:09 (846638): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:04:09] Arguments: --nthreads 8
[2025-11-27 00:04:09] Threads: 8
[2025-11-27 00:04:09] Checking for CVMFS
[2025-11-27 00:04:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:10] 2.13.3.0 12531 31044 455728 153347 2 663 39302855 40960001 39587 16776704 0 162092412 99.689 144244377 39117 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:04:10] CVMFS is ok
[2025-11-27 00:04:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:10] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:10] Checking for apptainer binary...
[2025-11-27 00:04:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:10] Running /usr/bin/apptainer --version
[2025-11-27 00:04:10] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:11] c7-13-33.aglt2.org
[2025-11-27 00:04:11] apptainer works
[2025-11-27 00:04:11] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:04:11] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:04:11] Starting ATLAS job with PandaID=6898177020
[2025-11-27 00:04:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:09:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:09:18] 2025-11-28 04:08:35,202 | INFO     | time since job start (83041s) is within the limit (172800.0s)
[2025-11-27 23:09:18] 2025-11-28 04:08:36,918 | INFO     | monitor loop #5095: job 0:6898177020 is in state 'finished'
[2025-11-27 23:09:18] 2025-11-28 04:08:36,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:09:18] 2025-11-28 04:08:37,208 | INFO     | time since job start (83043s) is within the limit (172800.0s)
[2025-11-27 23:09:18] 2025-11-28 04:08:39,215 | INFO     | time since job start (83045s) is within the limit (172800.0s)
[2025-11-27 23:09:18] 2025-11-28 04:08:39,425 | INFO     | monitor loop #5096: job 0:6898177020 is in state 'finished'
[2025-11-27 23:09:18] 2025-11-28 04:08:39,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:09:18] 2025-11-28 04:08:41,222 | INFO     | time since job start (83047s) is within the limit (172800.0s)
[2025-11-27 23:09:18] 2025-11-28 04:08:41,930 | INFO     | monitor loop #5097: job 0:6898177020 is in state 'finished'
[2025-11-27 23:09:18] 2025-11-28 04:08:41,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,170 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:09:18] 2025-11-28 04:08:42,185 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3277.4316562499994
[2025-11-27 23:09:18] 2025-11-28 04:08:42,215 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898177020/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,216 | INFO     | extracted standard info from prmon json
[2025-11-27 23:09:18] 2025-11-28 04:08:42,216 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:09:18] 2025-11-28 04:08:42,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:09:18] 2025-11-28 04:08:42,246 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:09:18] 2025-11-28 04:08:42,248 | INFO     | sum of square deviations: 781719155067.478
[2025-11-27 23:09:18] 2025-11-28 04:08:42,279 | INFO     | sum of deviations: 4828919376044.061
[2025-11-27 23:09:18] 2025-11-28 04:08:42,280 | INFO     | mean x: 1764261401.1197648
[2025-11-27 23:09:18] 2025-11-28 04:08:42,280 | INFO     | mean y: 2906261.324761205
[2025-11-27 23:09:18] 2025-11-28 04:08:42,280 | INFO     | intersect: -10895478419.473389
[2025-11-27 23:09:18] 2025-11-28 04:08:42,281 | INFO     | chi2: 14.697593302532415
[2025-11-27 23:09:18] 2025-11-28 04:08:42,282 | INFO     | sum of square deviations: 773135626376.1866
[2025-11-27 23:09:18] 2025-11-28 04:08:42,314 | INFO     | sum of deviations: 5331433966698.825
[2025-11-27 23:09:18] 2025-11-28 04:08:42,314 | INFO     | mean x: 1764261248.6238937
[2025-11-27 23:09:18] 2025-11-28 04:08:42,314 | INFO     | mean y: 2915188.634955752
[2025-11-27 23:09:18] 2025-11-28 04:08:42,314 | INFO     | intersect: -12163180934.928213
[2025-11-27 23:09:18] 2025-11-28 04:08:42,316 | INFO     | chi2: 11.004933422316656
[2025-11-27 23:09:18] 2025-11-28 04:08:42,316 | INFO     | current chi2=11.004933422316656 (change=25.124248604562418 %)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,317 | INFO     | sum of square deviations: 764615168634.8473
[2025-11-27 23:09:18] 2025-11-28 04:08:42,349 | INFO     | sum of deviations: 5630048444682.135
[2025-11-27 23:09:18] 2025-11-28 04:08:42,349 | INFO     | mean x: 1764261096.1280532
[2025-11-27 23:09:18] 2025-11-28 04:08:42,349 | INFO     | mean y: 2920530.149518875
[2025-11-27 23:09:18] 2025-11-28 04:08:42,349 | INFO     | intersect: -12987765304.664894
[2025-11-27 23:09:18] 2025-11-28 04:08:42,350 | INFO     | chi2: 9.432902855882567
[2025-11-27 23:09:18] 2025-11-28 04:08:42,350 | INFO     | current chi2=9.432902855882567 (change=14.284780344478992 %)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,350 | INFO     | right removable region: 1350
[2025-11-27 23:09:18] 2025-11-28 04:08:42,352 | INFO     | sum of square deviations: 773134696736.1869
[2025-11-27 23:09:18] 2025-11-28 04:08:42,390 | INFO     | sum of deviations: 4329958672921.1494
[2025-11-27 23:09:18] 2025-11-28 04:08:42,390 | INFO     | mean x: 1764261553.6238937
[2025-11-27 23:09:18] 2025-11-28 04:08:42,390 | INFO     | mean y: 2915124.766961652
[2025-11-27 23:09:18] 2025-11-28 04:08:42,390 | INFO     | intersect: -9877872333.956806
[2025-11-27 23:09:18] 2025-11-28 04:08:42,391 | INFO     | chi2: 11.281888519173092
[2025-11-27 23:09:18] 2025-11-28 04:08:42,391 | INFO     | current chi2=11.281888519173092 (change=23.239891818007997 %)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,396 | INFO     | left removable region: 10
[2025-11-27 23:09:18] 2025-11-28 04:08:42,397 | INFO     | sum of square deviations: 746089165999.7347
[2025-11-27 23:09:18] 2025-11-28 04:08:42,440 | INFO     | sum of deviations: 4669771749539.672
[2025-11-27 23:09:18] 2025-11-28 04:08:42,440 | INFO     | mean x: 1764261370.6373134
[2025-11-27 23:09:18] 2025-11-28 04:08:42,441 | INFO     | mean y: 2939650.686567164
[2025-11-27 23:09:18] 2025-11-28 04:08:42,441 | INFO     | intersect: -11039571463.07111
[2025-11-27 23:09:18] 2025-11-28 04:08:42,442 | INFO     | chi2: 2.2572468148011247
[2025-11-27 23:09:18] 2025-11-28 04:08:42,442 | INFO     | current memory leak: 6.26 B/s (using 1340 data points, chi2=2.26)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,443 | INFO     | could have reported an average CPU frequency of 3286 MHz (49 samples)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | ..............................
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . Timing measurements:
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . get job = 0 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . initial setup = 2 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . payload setup = 13 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . stage-in = 0 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . payload execution = 82988 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . stage-out = 7 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | . log creation = 1 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,444 | INFO     | ..............................
[2025-11-27 23:09:18] 2025-11-28 04:08:42,537 | INFO     | 
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | job summary report
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | --------------------------------------------------
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | PanDA job id: 6898177020
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | task id: 47556161
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | errors: (none)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | pilot state: finished 
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | transexitcode: 0
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | exeerrorcode: 0
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | exeerrordiag: 
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | exitcode: 0
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | exitmsg: OK
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | cpuconsumptiontime: 195830 s
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | nevents: 1000
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | neventsw: 0
[2025-11-27 23:09:18] 2025-11-28 04:08:42,661 | INFO     | pid: 879805
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | pgrp: 879805
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | corecount: 8
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | event service: False
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | sizes: {0: 2284093, 1: 2284292, 10: 2284554, 11: 2284582, 83007: 2348508, 83015: 2357502, 83017: 2357686, 83026: 2357932}
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | --------------------------------------------------
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | 
[2025-11-27 23:09:18] 2025-11-28 04:08:42,662 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 23:09:18] 2025-11-28 04:08:42,870 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,870 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,870 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,870 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:09:18] 2025-11-28 04:08:42,872 | INFO     | job 6898177020 has completed (purged errors)
[2025-11-27 23:09:18] 2025-11-28 04:08:42,872 | INFO     | overall cleanup function is called
[2025-11-27 23:09:18] 2025-11-28 04:08:43,896 | INFO     | --- collectZombieJob: --- 10, [879805]
[2025-11-27 23:09:18] 2025-11-28 04:08:43,896 | INFO     | zombie collector waiting for pid 879805
[2025-11-27 23:09:18] 2025-11-28 04:08:43,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:09:18] 2025-11-28 04:08:43,896 | INFO     | collected zombie processes
[2025-11-27 23:09:18] 2025-11-28 04:08:43,896 | INFO     | will attempt to kill all subprocesses of pid=879805
[2025-11-27 23:09:18] 2025-11-28 04:08:44,666 | INFO     | process IDs to be killed: [879805] (in reverse order)
[2025-11-27 23:09:18] 2025-11-28 04:08:44,881 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:09:18] 2025-11-28 04:08:44,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:09:18] 2025-11-28 04:08:44,983 | INFO     | did not find any defunct processes belonging to 879805
[2025-11-27 23:09:18] 2025-11-28 04:08:45,038 | INFO     | did not find any defunct processes belonging to 879805
[2025-11-27 23:09:18] 2025-11-28 04:08:45,059 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:09:18] 2025-11-28 04:08:45,059 | INFO     | ready for new job
[2025-11-27 23:09:18] 2025-11-28 04:08:45,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:09:18] 2025-11-28 04:08:45,066 | INFO     | ***************************************
[2025-11-27 23:09:18] 2025-11-28 04:08:45,066 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:09:18] 2025-11-28 04:08:45,066 | INFO     | ***************************************
[2025-11-27 23:09:18] 2025-11-28 04:08:45,066 | INFO     | 
[2025-11-27 23:09:18] 2025-11-28 04:08:45,069 | INFO     | architecture information:
[2025-11-27 23:09:18] 2025-11-28 04:08:45,070 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:09:18] 2025-11-28 04:08:45,126 | INFO     | cat /etc/os-release:
[2025-11-27 23:09:18] NAME="CentOS Linux"
[2025-11-27 23:09:18] VERSION="7 (Core)"
[2025-11-27 23:09:18] ID="centos"
[2025-11-27 23:09:18] ID_LIKE="rhel fedora"
[2025-11-27 23:09:18] VERSION_ID="7"
[2025-11-27 23:09:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:09:18] ANSI_COLOR="0;31"
[2025-11-27 23:09:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:09:18] HOME_URL="https://www.centos.org/"
[2025-11-27 23:09:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:09:18] 
[2025-11-27 23:09:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:09:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:09:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:09:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:09:18] 
[2025-11-27 23:09:18] 2025-11-28 04:08:45,126 | INFO     | ***************************************
[2025-11-27 23:09:18] 2025-11-28 04:08:45,630 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 23:09:18] 2025-11-28 04:08:45,669 | INFO     | sufficient remaining disk space (80203481088 B)
[2025-11-27 23:09:18] 2025-11-28 04:08:45,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:09:18] 2025-11-28 04:08:45,670 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:09:18] 2025-11-28 04:08:45,670 | INFO     | update_server=False
[2025-11-27 23:09:18] 2025-11-28 04:08:45,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:09:18] 2025-11-28 04:08:45,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:09:18] 2025-11-28 04:08:45,670 | INFO     | aborting loop
[2025-11-27 23:09:18] 2025-11-28 04:08:45,733 | INFO     | all data control threads have been joined
[2025-11-27 23:09:18] 2025-11-28 04:08:45,936 | INFO     | all job control threads have been joined
[2025-11-27 23:09:18] 2025-11-28 04:08:45,997 | INFO     | all payload control threads have been joined
[2025-11-27 23:09:18] 2025-11-28 04:08:46,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:09:18] 2025-11-28 04:08:46,678 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:46,678 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:46,803 | INFO     | [data] control thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:46,943 | INFO     | [job] control thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:47,003 | INFO     | [payload] control thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:47,008 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:47,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:09:18] 2025-11-28 04:08:47,566 | INFO     | [job] validate thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:47,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:09:18] 2025-11-28 04:08:47,963 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,093 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,167 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,193 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,270 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,314 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:48,568 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:08:51,888 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:09:18] 2025-11-28 04:09:00,370 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:09:18] 2025-11-28 04:09:01,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786861557568)>', '<ExcThread(monitor, started 139786002093824)>']
[2025-11-27 23:09:18] 2025-11-28 04:09:06,653 | INFO     | all workflow threads have been joined
[2025-11-27 23:09:18] 2025-11-28 04:09:06,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:09:18] 2025-11-28 04:09:06,654 | INFO     | traces error code: 0
[2025-11-27 23:09:18] 2025-11-28 04:09:06,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:09:18] 2025-11-28 04:09:17,276 | INFO     | PID=861519 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 23:09:18] 2025-11-28 04:09:17,277 | INFO     | .. there are 47 such processes running
[2025-11-27 23:09:18] 2025-11-28 04:09:17,277 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:09:18] 2025-11-28 04:09:17,277 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:09:18] 2025-11-28 04:09:17,277 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:09:18] 2025-11-28 04:09:17,277 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:09:18] 2025-11-28 04:09:17,277 | INFO     | [monitor] control thread has ended
[2025-11-27 23:09:18] 2025-11-28 04:09:17,476 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:09:18] 2025-11-28 04:09:17,478 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:09:18] 2025-11-28 04:09:17,480 [wrapper] pilotpid: 861519
[2025-11-27 23:09:18] 2025-11-28 04:09:17,483 [wrapper] Pilot exit status: 0
[2025-11-27 23:09:18] 2025-11-28 04:09:17,510 [wrapper] pandaids: 6898177020
[2025-11-27 23:09:18] 2025-11-28 04:09:17,621 [wrapper] cleanup supervisor_pilot 2401592 861520
[2025-11-27 23:09:18] 2025-11-28 04:09:17,639 [wrapper] Test setup, not cleaning
[2025-11-27 23:09:18] 2025-11-28 04:09:17,648 [wrapper] apfmon messages muted
[2025-11-27 23:09:18] 2025-11-28 04:09:17,655 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:09:18] 2025-11-28 04:09:17,710 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:09:18]  *** Error codes and diagnostics ***
[2025-11-27 23:09:18]     "exeErrorCode": 0,
[2025-11-27 23:09:18]     "exeErrorDiag": "",
[2025-11-27 23:09:18]     "pilotErrorCode": 0,
[2025-11-27 23:09:18]     "pilotErrorDiag": "",
[2025-11-27 23:09:18]  *** Listing of results directory ***
[2025-11-27 23:09:18] total 1333996
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 23:09:18] -rwx------. 1 boincer umatlas     36292 Nov 25 23:03 runpilot2-wrapper.sh
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:03 queuedata.json
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:09:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 23:09:18] -rw-r--r--. 2 boincer umatlas 411346152 Nov 27 00:04 EVNT.47483658._002465.pool.root.1
[2025-11-27 23:09:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 23:09:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 23:09:18] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:04 input.tar.gz
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:04 pandaJob.out
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 23:09:18] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:51 boinc_task_state.xml
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas      6901 Nov 27 23:00 init_data.xml
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas 924614778 Nov 27 23:06 HITS.47556161._004472.pool.root.1
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas      1049 Nov 27 23:08 memory_monitor_summary.json
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas        95 Nov 27 23:08 pilot_heartbeat.json
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas   2416093 Nov 27 23:08 log.47556161._004472.job.log.tgz.1
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas      8581 Nov 27 23:08 heartbeat.json
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:09 boinc_mmap_file
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:09 wrapper_checkpoint.txt
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas       822 Nov 27 23:09 pilotlog.txt
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas  10646152 Nov 27 23:09 log.47556161._004472.job.log.1
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas       353 Nov 27 23:09 output.list
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:09 runtime_log
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas  13086720 Nov 27 23:09 result.tar.gz
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas       662 Nov 27 23:09 SMDLDmovLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEtJKDmvkTnIm.diag
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 23:09 runtime_log.err
[2025-11-27 23:09:18] -rw-r--r--. 1 boincer umatlas     21549 Nov 27 23:09 stderr.txt
[2025-11-27 23:09:18] HITS file was successfully produced:
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas 924614778 Nov 27 23:06 shared/HITS.pool.root.1
[2025-11-27 23:09:18]  *** Contents of shared directory: ***
[2025-11-27 23:09:18] total 1318040
[2025-11-27 23:09:18] -rw-r--r--. 2 boincer umatlas 411346152 Nov 27 00:04 ATLAS.root_0
[2025-11-27 23:09:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 23:09:18] -rw-r--r--. 2 boincer umatlas    590101 Nov 27 00:04 input.tar.gz
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas 924614778 Nov 27 23:06 HITS.pool.root.1
[2025-11-27 23:09:18] -rw-------. 1 boincer umatlas  13086720 Nov 27 23:09 result.tar.gz
23:09:19 (846638): run_atlas exited; CPU time 196824.629510
23:09:19 (846638): called boinc_finish(0)

</stderr_txt>
]]>

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