Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:37 (3454057): wrapper (7.7.26015): starting
00:02:37 (3454057): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:37] Arguments: --nthreads 9
[2025-11-27 00:02:37] Threads: 9
[2025-11-27 00:02:37] Checking for CVMFS
[2025-11-27 00:02:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:40] 2.13.3.0 11226 29347 347504 153347 3 334 26751912 32935937 21816 16776704 0 69333893 99.477 96535856 40372 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:40] CVMFS is ok
[2025-11-27 00:02:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:40] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:40] Checking for apptainer binary...
[2025-11-27 00:02:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:40] Running /usr/bin/apptainer --version
[2025-11-27 00:02:40] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:40] c6-2-29-3.aglt2.org
[2025-11-27 00:02:40] apptainer works
[2025-11-27 00:02:40] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:40] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:41] Starting ATLAS job with PandaID=6898176663
[2025-11-27 00:02:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:55:07]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:55:07] 2025-11-28 05:49:41,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:55:07] 2025-11-28 05:49:42,419 | INFO     | PID=3461345 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 03:55:07] 2025-11-28 05:49:42,419 | INFO     | .. there are 34 such processes running
[2025-11-28 03:55:07] 2025-11-28 05:49:43,421 | INFO     | time since job start (89156s) is within the limit (172800.0s)
[2025-11-28 03:55:07] 2025-11-28 05:49:43,916 | INFO     | monitor loop #5406: job 0:6898176663 is in state 'finished'
[2025-11-28 03:55:07] 2025-11-28 05:49:43,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:55:07] 2025-11-28 05:49:45,429 | INFO     | time since job start (89158s) is within the limit (172800.0s)
[2025-11-28 03:55:07] 2025-11-28 05:49:46,421 | INFO     | monitor loop #5407: job 0:6898176663 is in state 'finished'
[2025-11-28 03:55:07] 2025-11-28 05:49:46,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:55:07] 2025-11-28 05:49:47,436 | INFO     | time since job start (89160s) is within the limit (172800.0s)
[2025-11-28 03:55:07] 2025-11-28 05:49:48,927 | INFO     | monitor loop #5408: job 0:6898176663 is in state 'finished'
[2025-11-28 03:55:07] 2025-11-28 05:49:48,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:55:07] 2025-11-28 05:49:49,442 | INFO     | time since job start (89162s) is within the limit (172800.0s)
[2025-11-28 03:55:07] 2025-11-28 05:49:51,435 | INFO     | monitor loop #5409: job 0:6898176663 is in state 'finished'
[2025-11-28 03:55:07] 2025-11-28 05:49:51,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:55:07] 2025-11-28 05:49:51,452 | INFO     | time since job start (89164s) is within the limit (172800.0s)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,446 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 03:55:07] 2025-11-28 05:49:53,460 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2959.771624999999
[2025-11-28 03:55:07] 2025-11-28 05:49:53,467 | INFO     | time since job start (89166s) is within the limit (172800.0s)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,470 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898176663/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,471 | INFO     | extracted standard info from prmon json
[2025-11-28 03:55:07] 2025-11-28 05:49:53,471 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:55:07] 2025-11-28 05:49:53,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:55:07] 2025-11-28 05:49:53,508 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:55:07] 2025-11-28 05:49:53,512 | INFO     | sum of square deviations: 963053472966.1302
[2025-11-28 03:55:07] 2025-11-28 05:49:53,548 | INFO     | sum of deviations: 5229751122415.012
[2025-11-28 03:55:07] 2025-11-28 05:49:53,549 | INFO     | mean x: 1764264429.9177518
[2025-11-28 03:55:07] 2025-11-28 05:49:53,549 | INFO     | mean y: 3018456.4667580533
[2025-11-28 03:55:07] 2025-11-28 05:49:53,549 | INFO     | intersect: -9577616618.947935
[2025-11-28 03:55:07] 2025-11-28 05:49:53,551 | INFO     | chi2: 24.182516870815622
[2025-11-28 03:55:07] 2025-11-28 05:49:53,552 | INFO     | sum of square deviations: 953187192495.1788
[2025-11-28 03:55:07] 2025-11-28 05:49:53,589 | INFO     | sum of deviations: 5749396541829.286
[2025-11-28 03:55:07] 2025-11-28 05:49:53,589 | INFO     | mean x: 1764264277.4243467
[2025-11-28 03:55:07] 2025-11-28 05:49:53,589 | INFO     | mean y: 3026487.0481430534
[2025-11-28 03:55:07] 2025-11-28 05:49:53,589 | INFO     | intersect: -10638592510.101557
[2025-11-28 03:55:07] 2025-11-28 05:49:53,591 | INFO     | chi2: 20.78654413142786
[2025-11-28 03:55:07] 2025-11-28 05:49:53,591 | INFO     | current chi2=20.78654413142786 (change=14.043090541523206 %)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,591 | INFO     | right removable region: 1453
[2025-11-28 03:55:07] 2025-11-28 05:49:53,593 | INFO     | sum of square deviations: 953185485715.1777
[2025-11-28 03:55:07] 2025-11-28 05:49:53,629 | INFO     | sum of deviations: 4606857535219.348
[2025-11-28 03:55:07] 2025-11-28 05:49:53,629 | INFO     | mean x: 1764264582.4243467
[2025-11-28 03:55:07] 2025-11-28 05:49:53,629 | INFO     | mean y: 3028082.1031636866
[2025-11-28 03:55:07] 2025-11-28 05:49:53,629 | INFO     | intersect: -8523870100.32559
[2025-11-28 03:55:07] 2025-11-28 05:49:53,631 | INFO     | chi2: 19.958969813385693
[2025-11-28 03:55:07] 2025-11-28 05:49:53,631 | INFO     | current chi2=19.958969813385693 (change=17.46529147479709 %)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,631 | INFO     | left removable region: 10
[2025-11-28 03:55:07] 2025-11-28 05:49:53,633 | INFO     | sum of square deviations: 931715689146.6339
[2025-11-28 03:55:07] 2025-11-28 05:49:53,668 | INFO     | sum of deviations: 4683486013473.284
[2025-11-28 03:55:07] 2025-11-28 05:49:53,669 | INFO     | mean x: 1764264551.9390159
[2025-11-28 03:55:07] 2025-11-28 05:49:53,669 | INFO     | mean y: 3046243.435204435
[2025-11-28 03:55:07] 2025-11-28 05:49:53,669 | INFO     | intersect: -8865440623.670317
[2025-11-28 03:55:07] 2025-11-28 05:49:53,670 | INFO     | chi2: 12.79774226006424
[2025-11-28 03:55:07] 2025-11-28 05:49:53,671 | INFO     | current memory leak: 5.03 B/s (using 1443 data points, chi2=12.80)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | could have reported an average CPU frequency of 2826 MHz (52 samples)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | ..............................
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | . Timing measurements:
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | . get job = 0 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | . initial setup = 6 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | . payload setup = 38 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | . stage-in = 0 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,672 | INFO     | . payload execution = 89014 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,673 | INFO     | . stage-out = 8 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,673 | INFO     | . log creation = 2 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,673 | INFO     | ..............................
[2025-11-28 03:55:07] 2025-11-28 05:49:53,774 | INFO     | 
[2025-11-28 03:55:07] 2025-11-28 05:49:53,774 | INFO     | job summary report
[2025-11-28 03:55:07] 2025-11-28 05:49:53,774 | INFO     | --------------------------------------------------
[2025-11-28 03:55:07] 2025-11-28 05:49:53,774 | INFO     | PanDA job id: 6898176663
[2025-11-28 03:55:07] 2025-11-28 05:49:53,774 | INFO     | task id: 47556161
[2025-11-28 03:55:07] 2025-11-28 05:49:53,774 | INFO     | errors: (none)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | pilot state: finished 
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | transexitcode: 0
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | exeerrorcode: 0
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | exeerrordiag: 
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | exitcode: 0
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | exitmsg: OK
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | cpuconsumptiontime: 256396 s
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | nevents: 1000
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | neventsw: 0
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | pid: 3481968
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | pgrp: 3481968
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | corecount: 9
[2025-11-28 03:55:07] 2025-11-28 05:49:53,775 | INFO     | event service: False
[2025-11-28 03:55:07] 2025-11-28 05:49:53,776 | INFO     | sizes: {0: 2284093, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 31: 2284666, 35: 2284822, 89056: 2350605, 89057: 2350604, 89066: 2359654, 89067: 2359710, 891
[2025-11-28 03:55:07] 2025-11-28 05:49:53,776 | INFO     | --------------------------------------------------
[2025-11-28 03:55:07] 2025-11-28 05:49:53,776 | INFO     | 
[2025-11-28 03:55:07] 2025-11-28 05:49:53,776 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-28 03:55:07] 2025-11-28 05:49:53,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | job 6898176663 has completed (purged errors)
[2025-11-28 03:55:07] 2025-11-28 05:49:53,894 | INFO     | overall cleanup function is called
[2025-11-28 03:55:07] 2025-11-28 05:49:54,926 | INFO     | --- collectZombieJob: --- 10, [3481968]
[2025-11-28 03:55:07] 2025-11-28 05:49:54,926 | INFO     | zombie collector waiting for pid 3481968
[2025-11-28 03:55:07] 2025-11-28 05:49:54,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:55:07] 2025-11-28 05:49:54,926 | INFO     | collected zombie processes
[2025-11-28 03:55:07] 2025-11-28 05:49:54,926 | INFO     | will attempt to kill all subprocesses of pid=3481968
[2025-11-28 03:55:07] 2025-11-28 05:49:55,939 | INFO     | process IDs to be killed: [3481968] (in reverse order)
[2025-11-28 03:55:07] 2025-11-28 05:49:56,313 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:55:07] 2025-11-28 05:49:56,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:55:07] 2025-11-28 05:49:56,352 | INFO     | did not find any defunct processes belonging to 3481968
[2025-11-28 03:55:07] 2025-11-28 05:49:56,428 | INFO     | did not find any defunct processes belonging to 3481968
[2025-11-28 03:55:07] 2025-11-28 05:49:56,443 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:55:07] 2025-11-28 05:49:56,445 | INFO     | ready for new job
[2025-11-28 03:55:07] 2025-11-28 05:49:56,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:55:07] 2025-11-28 05:49:56,499 | INFO     | ***************************************
[2025-11-28 03:55:07] 2025-11-28 05:49:56,500 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:55:07] 2025-11-28 05:49:56,500 | INFO     | ***************************************
[2025-11-28 03:55:07] 2025-11-28 05:49:56,504 | INFO     | 
[2025-11-28 03:55:07] 2025-11-28 05:49:56,527 | INFO     | architecture information:
[2025-11-28 03:55:07] 2025-11-28 05:49:56,531 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:55:07] 2025-11-28 05:49:56,635 | INFO     | cat /etc/os-release:
[2025-11-28 03:55:07] NAME="CentOS Linux"
[2025-11-28 03:55:07] VERSION="7 (Core)"
[2025-11-28 03:55:07] ID="centos"
[2025-11-28 03:55:07] ID_LIKE="rhel fedora"
[2025-11-28 03:55:07] VERSION_ID="7"
[2025-11-28 03:55:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:55:07] ANSI_COLOR="0;31"
[2025-11-28 03:55:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:55:07] HOME_URL="https://www.centos.org/"
[2025-11-28 03:55:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:55:07] 
[2025-11-28 03:55:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:55:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:55:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:55:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:55:07] 
[2025-11-28 03:55:07] 2025-11-28 05:49:56,636 | INFO     | ***************************************
[2025-11-28 03:55:07] 2025-11-28 05:49:57,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-28 03:55:07] 2025-11-28 05:49:57,195 | INFO     | sufficient remaining disk space (69592940544 B)
[2025-11-28 03:55:07] 2025-11-28 05:49:57,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:55:07] 2025-11-28 05:49:57,196 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:55:07] 2025-11-28 05:49:57,197 | INFO     | update_server=False
[2025-11-28 03:55:07] 2025-11-28 05:49:57,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:55:07] 2025-11-28 05:49:57,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:55:07] 2025-11-28 05:49:57,466 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:55:07] 2025-11-28 05:49:57,466 | INFO     | aborting loop
[2025-11-28 03:55:07] 2025-11-28 05:49:57,564 | INFO     | all job control threads have been joined
[2025-11-28 03:55:07] 2025-11-28 05:49:58,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:55:07] 2025-11-28 05:49:58,202 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:58,276 | INFO     | all data control threads have been joined
[2025-11-28 03:55:07] 2025-11-28 05:49:58,283 | INFO     | all payload control threads have been joined
[2025-11-28 03:55:07] 2025-11-28 05:49:58,474 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:58,585 | INFO     | [job] control thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:58,759 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:58,770 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:58,771 | INFO     | [job] validate thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:58,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:55:07] 2025-11-28 05:49:58,897 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,209 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,282 | INFO     | [data] control thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,302 | INFO     | [payload] control thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,378 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,454 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,486 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,795 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:49:59,797 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:50:02,103 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:55:07] 2025-11-28 05:50:26,365 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:55:07] 2025-11-28 05:50:26,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407685896000)>', '<ExcThread(monitor, started 140406977197824)>']
[2025-11-28 03:55:07] 2025-11-28 05:50:27,677 | INFO     | PID=3461345 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 03:55:07] 2025-11-28 05:50:27,690 | INFO     | .. there are 33 such processes running
[2025-11-28 03:55:07] 2025-11-28 05:50:27,697 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:55:07] 2025-11-28 05:50:27,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:55:07] 2025-11-28 05:50:27,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:55:07] 2025-11-28 05:50:27,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:55:07] 2025-11-28 05:50:27,701 | INFO     | [monitor] control thread has ended
[2025-11-28 03:55:07] 2025-11-28 05:50:31,575 | INFO     | all workflow threads have been joined
[2025-11-28 03:55:07] 2025-11-28 05:50:31,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:55:07] 2025-11-28 05:50:31,575 | INFO     | traces error code: 0
[2025-11-28 03:55:07] 2025-11-28 05:50:31,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:55:07] 2025-11-28 05:50:32,674 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:55:07] 2025-11-28 05:50:32,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:55:07] 2025-11-28 05:50:32,726 [wrapper] pilotpid: 3461345
[2025-11-28 03:55:07] 2025-11-28 05:50:32,741 [wrapper] Pilot exit status: 0
[2025-11-28 03:55:07] 2025-11-28 05:50:32,903 [wrapper] pandaids: 6898176663
[2025-11-28 03:55:07] 2025-11-28 05:50:33,285 [wrapper] cleanup supervisor_pilot 3121946 3461346
[2025-11-28 03:55:07] 2025-11-28 05:50:33,310 [wrapper] Test setup, not cleaning
[2025-11-28 03:55:07] 2025-11-28 05:50:33,332 [wrapper] apfmon messages muted
[2025-11-28 03:55:07] 2025-11-28 05:50:33,346 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:55:07] 2025-11-28 05:50:33,370 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:55:07]  *** Error codes and diagnostics ***
[2025-11-28 03:55:07]     "exeErrorCode": 0,
[2025-11-28 03:55:07]     "exeErrorDiag": "",
[2025-11-28 03:55:07]     "pilotErrorCode": 0,
[2025-11-28 03:55:07]     "pilotErrorDiag": "",
[2025-11-28 03:55:07]  *** Listing of results directory ***
[2025-11-28 03:55:07] total 1338572
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-28 03:55:07] -rwx------. 1 boincer umatlas     36292 Nov 25 23:00 runpilot2-wrapper.sh
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:55:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-28 03:55:07] -rw-r--r--. 2 boincer umatlas 411399162 Nov 27 00:02 EVNT.47483658._002463.pool.root.1
[2025-11-28 03:55:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-28 03:55:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-28 03:55:07] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:02 input.tar.gz
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-28 03:55:07] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas       533 Nov 28 00:07 boinc_task_state.xml
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas 927298475 Nov 28 00:48 HITS.47556161._004459.pool.root.1
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas      1062 Nov 28 00:49 memory_monitor_summary.json
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas   1516240 Nov 28 00:49 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas   2628120 Nov 28 00:49 log.47556161._004459.job.log.tgz.1
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas      8626 Nov 28 00:49 heartbeat.json
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas        95 Nov 28 00:50 pilot_heartbeat.json
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas      4824 Nov 28 00:50 pilotlog.txt
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas  11406601 Nov 28 00:50 log.47556161._004459.job.log.1
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas       353 Nov 28 00:50 output.list
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:50 runtime_log
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas  14059520 Nov 28 00:50 result.tar.gz
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas      9348 Nov 28 00:50 runtime_log.err
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas       661 Nov 28 00:50 r4xMDmssLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7tMKDm3cYbNm.diag
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas      6845 Nov 28 03:54 init_data.xml
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas        29 Nov 28 03:55 wrapper_checkpoint.txt
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 03:55 boinc_mmap_file
[2025-11-28 03:55:07] -rw-r--r--. 1 boincer umatlas     21836 Nov 28 03:55 stderr.txt
[2025-11-28 03:55:07] HITS file was successfully produced:
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas 927298475 Nov 28 00:48 shared/HITS.pool.root.1
[2025-11-28 03:55:07]  *** Contents of shared directory: ***
[2025-11-28 03:55:07] total 1321664
[2025-11-28 03:55:07] -rw-r--r--. 2 boincer umatlas 411399162 Nov 27 00:02 ATLAS.root_0
[2025-11-28 03:55:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-28 03:55:07] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:02 input.tar.gz
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas 927298475 Nov 28 00:48 HITS.pool.root.1
[2025-11-28 03:55:07] -rw-------. 1 boincer umatlas  14059520 Nov 28 00:50 result.tar.gz
03:55:08 (3454057): run_atlas exited; CPU time 258239.862644
03:55:08 (3454057): called boinc_finish(0)

</stderr_txt>
]]>

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