Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:22:58 (23596): wrapper (7.7.26015): starting
03:22:58 (23596): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 03:22:58] Arguments: --nthreads 8
[2025-11-29 03:22:58] Threads: 8
[2025-11-29 03:22:58] Checking for CVMFS
[2025-11-29 03:22:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 03:22:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 03:22:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 03:23:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 03:23:00] 2.11.2.0 29171 289064 141700 153426 0 84 20244051 25165825 1920 130560 10 146803596 99.877 83728360 3530 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 03:23:00] CVMFS is ok
[2025-11-29 03:23:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 03:23:00] Checking for apptainer binary...
[2025-11-29 03:23:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 03:23:00] Running /usr/bin/apptainer --version
[2025-11-29 03:23:00] apptainer version 1.3.2-1.el7
[2025-11-29 03:23:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 03:23:25] cg-vwn473.simple-grid.lan
[2025-11-29 03:23:25] apptainer works
[2025-11-29 03:23:25] Set ATHENA_PROC_NUMBER=8
[2025-11-29 03:23:25] Set ATHENA_CORE_NUMBER=8
[2025-11-29 03:23:25] Starting ATLAS job with PandaID=6894239203
[2025-11-29 03:23:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 13:42:27]  *** The last 200 lines of the pilot log: ***
[2025-11-29 13:42:27] 2025-11-29 12:41:40,121 | INFO     | extracted standard info from prmon json
[2025-11-29 13:42:27] 2025-11-29 12:41:40,121 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 13:42:27] 2025-11-29 12:41:40,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 13:42:27] 2025-11-29 12:41:40,122 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 13:42:27] 2025-11-29 12:41:40,122 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 13:42:27] 2025-11-29 12:41:40,133 | INFO     | fitting pss+swap vs Time
[2025-11-29 13:42:27] 2025-11-29 12:41:40,134 | INFO     | sum of square deviations: 65317280490.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,152 | INFO     | sum of deviations: 279230173203.00006
[2025-11-29 13:42:27] 2025-11-29 12:41:40,152 | INFO     | mean x: 1764401872.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,153 | INFO     | mean y: 2517452.6033613444
[2025-11-29 13:42:27] 2025-11-29 12:41:40,153 | INFO     | intersect: -7540268110.761993
[2025-11-29 13:42:27] 2025-11-29 12:41:40,153 | INFO     | chi2: 8.081053641904848
[2025-11-29 13:42:27] 2025-11-29 12:41:40,154 | INFO     | sum of square deviations: 63684421967.5
[2025-11-29 13:42:27] 2025-11-29 12:41:40,163 | INFO     | sum of deviations: 357398312347.00006
[2025-11-29 13:42:27] 2025-11-29 12:41:40,164 | INFO     | mean x: 1764401719.5
[2025-11-29 13:42:27] 2025-11-29 12:41:40,164 | INFO     | mean y: 2524714.515254237
[2025-11-29 13:42:27] 2025-11-29 12:41:40,164 | INFO     | intersect: -9899334757.071932
[2025-11-29 13:42:27] 2025-11-29 12:41:40,169 | INFO     | chi2: 6.569785146574496
[2025-11-29 13:42:27] 2025-11-29 12:41:40,169 | INFO     | current chi2=6.569785146574496 (change=18.701379328724755 %)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,169 | INFO     | right removable region: 589
[2025-11-29 13:42:27] 2025-11-29 12:41:40,170 | INFO     | sum of square deviations: 63684421967.5
[2025-11-29 13:42:27] 2025-11-29 12:41:40,182 | INFO     | sum of deviations: 70979767383.99995
[2025-11-29 13:42:27] 2025-11-29 12:41:40,183 | INFO     | mean x: 1764402024.5
[2025-11-29 13:42:27] 2025-11-29 12:41:40,183 | INFO     | mean y: 2536895.5457627117
[2025-11-29 13:42:27] 2025-11-29 12:41:40,183 | INFO     | intersect: -1963985550.6308012
[2025-11-29 13:42:27] 2025-11-29 12:41:40,184 | INFO     | chi2: 3.7081766553309863
[2025-11-29 13:42:27] 2025-11-29 12:41:40,184 | INFO     | current chi2=3.7081766553309863 (change=54.11270832182098 %)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,185 | INFO     | sum of square deviations: 62079005820.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,199 | INFO     | sum of deviations: -65349115779.99999
[2025-11-29 13:42:27] 2025-11-29 12:41:40,200 | INFO     | mean x: 1764402177.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,200 | INFO     | mean y: 2549829.8786324784
[2025-11-29 13:42:27] 2025-11-29 12:41:40,200 | INFO     | intersect: 1859894686.2311828
[2025-11-29 13:42:27] 2025-11-29 12:41:40,201 | INFO     | chi2: 1.7723821657459007
[2025-11-29 13:42:27] 2025-11-29 12:41:40,201 | INFO     | current chi2=1.7723821657459007 (change=52.20340532596065 %)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,202 | INFO     | sum of square deviations: 60500799485.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,211 | INFO     | sum of deviations: -85986770803.5
[2025-11-29 13:42:27] 2025-11-29 12:41:40,212 | INFO     | mean x: 1764402329.5
[2025-11-29 13:42:27] 2025-11-29 12:41:40,212 | INFO     | mean y: 2551819.1568965516
[2025-11-29 13:42:27] 2025-11-29 12:41:40,212 | INFO     | intersect: 2510208908.043678
[2025-11-29 13:42:27] 2025-11-29 12:41:40,213 | INFO     | chi2: 1.7144911773729348
[2025-11-29 13:42:27] 2025-11-29 12:41:40,213 | INFO     | current chi2=1.7144911773729348 (change=3.2662813636811054 %)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,213 | INFO     | left removable region: 30
[2025-11-29 13:42:27] 2025-11-29 12:41:40,214 | INFO     | sum of square deviations: 54164215560.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,237 | INFO     | sum of deviations: 32603374671.999992
[2025-11-29 13:42:27] 2025-11-29 12:41:40,237 | INFO     | mean x: 1764402604.0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,237 | INFO     | mean y: 2555486.946332737
[2025-11-29 13:42:27] 2025-11-29 12:41:40,237 | INFO     | intersect: -1059501418.6270716
[2025-11-29 13:42:27] 2025-11-29 12:41:40,238 | INFO     | chi2: 0.05486073940931182
[2025-11-29 13:42:27] 2025-11-29 12:41:40,238 | INFO     | current memory leak: 0.60 B/s (using 559 data points, chi2=0.05)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | could have reported an average CPU frequency of 2249 MHz (22 samples)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | ..............................
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | . Timing measurements:
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | . get job = 0 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | . initial setup = 5 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | . payload setup = 177 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,239 | INFO     | . stage-in = 0 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,240 | INFO     | . payload execution = 36399 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,240 | INFO     | . stage-out = 3 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,240 | INFO     | . log creation = 1 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,240 | INFO     | ..............................
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | 
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | job summary report
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | --------------------------------------------------
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | PanDA job id: 6894239203
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | task id: 47523939
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | errors: (none)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | pilot state: finished 
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | transexitcode: 0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | exeerrorcode: 0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | exeerrordiag: 
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | exitcode: 0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | exitmsg: OK
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | cpuconsumptiontime: 140923 s
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | nevents: 400
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | neventsw: 0
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | pid: 1707
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | pgrp: 1707
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | corecount: 8
[2025-11-29 13:42:27] 2025-11-29 12:41:40,359 | INFO     | event service: False
[2025-11-29 13:42:27] 2025-11-29 12:41:40,360 | INFO     | sizes: {0: 2283723, 1: 2283922, 12: 2283922, 23: 2283950, 33: 2283978, 44: 2284034, 55: 2284190, 65: 2284218, 76: 2284246, 87: 2284302, 97: 2284592, 98: 2284900, 3
[2025-11-29 13:42:27] 2025-11-29 12:41:40,360 | INFO     | --------------------------------------------------
[2025-11-29 13:42:27] 2025-11-29 12:41:40,360 | INFO     | 
[2025-11-29 13:42:27] 2025-11-29 12:41:40,360 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 13:42:27] 2025-11-29 12:41:40,535 | INFO     | job 6894239203 has completed (purged errors)
[2025-11-29 13:42:27] 2025-11-29 12:41:40,535 | INFO     | overall cleanup function is called
[2025-11-29 13:42:27] 2025-11-29 12:41:41,542 | INFO     | --- collectZombieJob: --- 10, [1707]
[2025-11-29 13:42:27] 2025-11-29 12:41:41,542 | INFO     | zombie collector waiting for pid 1707
[2025-11-29 13:42:27] 2025-11-29 12:41:41,543 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 13:42:27] 2025-11-29 12:41:41,543 | INFO     | collected zombie processes
[2025-11-29 13:42:27] 2025-11-29 12:41:41,543 | INFO     | will attempt to kill all subprocesses of pid=1707
[2025-11-29 13:42:27] 2025-11-29 12:41:41,646 | INFO     | process IDs to be killed: [1707] (in reverse order)
[2025-11-29 13:42:27] 2025-11-29 12:41:42,651 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 13:42:27] 2025-11-29 12:41:42,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 13:42:27] 2025-11-29 12:41:42,654 | INFO     | did not find any defunct processes belonging to 1707
[2025-11-29 13:42:27] 2025-11-29 12:41:42,657 | INFO     | did not find any defunct processes belonging to 1707
[2025-11-29 13:42:27] 2025-11-29 12:41:42,681 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 13:42:27] 2025-11-29 12:41:42,682 | INFO     | ready for new job
[2025-11-29 13:42:27] 2025-11-29 12:41:42,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 13:42:27] 2025-11-29 12:41:42,684 | INFO     | ***************************************
[2025-11-29 13:42:27] 2025-11-29 12:41:42,685 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 13:42:27] 2025-11-29 12:41:42,685 | INFO     | ***************************************
[2025-11-29 13:42:27] 2025-11-29 12:41:42,685 | INFO     | 
[2025-11-29 13:42:27] 2025-11-29 12:41:42,685 | INFO     | pilot is running in a VM
[2025-11-29 13:42:27] 2025-11-29 12:41:42,685 | INFO     | architecture information:
[2025-11-29 13:42:27] 2025-11-29 12:41:42,693 | INFO     | executing command: cat /etc/os-release
[2025-11-29 13:42:27] 2025-11-29 12:41:42,980 | INFO     | cat /etc/os-release:
[2025-11-29 13:42:27] NAME="CentOS Linux"
[2025-11-29 13:42:27] VERSION="7 (Core)"
[2025-11-29 13:42:27] ID="centos"
[2025-11-29 13:42:27] ID_LIKE="rhel fedora"
[2025-11-29 13:42:27] VERSION_ID="7"
[2025-11-29 13:42:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 13:42:27] ANSI_COLOR="0;31"
[2025-11-29 13:42:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 13:42:27] HOME_URL="https://www.centos.org/"
[2025-11-29 13:42:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 13:42:27] 
[2025-11-29 13:42:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 13:42:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 13:42:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 13:42:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 13:42:27] 
[2025-11-29 13:42:27] 2025-11-29 12:41:42,980 | INFO     | ***************************************
[2025-11-29 13:42:27] 2025-11-29 12:41:43,487 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-29 13:42:27] 2025-11-29 12:41:43,635 | INFO     | sufficient remaining disk space (489076817920 B)
[2025-11-29 13:42:27] 2025-11-29 12:41:43,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 13:42:27] 2025-11-29 12:41:43,635 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 13:42:27] 2025-11-29 12:41:43,635 | INFO     | update_server=False
[2025-11-29 13:42:27] 2025-11-29 12:41:43,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 13:42:27] 2025-11-29 12:41:43,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 13:42:27] 2025-11-29 12:41:43,711 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 13:42:27] 2025-11-29 12:41:43,711 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 13:42:27] 2025-11-29 12:41:43,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 13:42:27] 2025-11-29 12:41:43,712 | INFO     | will abort loop
[2025-11-29 13:42:27] 2025-11-29 12:41:43,777 | INFO     | all data control threads have been joined
[2025-11-29 13:42:27] 2025-11-29 12:41:43,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 13:42:27] 2025-11-29 12:41:44,326 | INFO     | all payload control threads have been joined
[2025-11-29 13:42:27] 2025-11-29 12:41:44,594 | INFO     | all job control threads have been joined
[2025-11-29 13:42:27] 2025-11-29 12:41:44,641 | INFO     | [job] retrieve thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:44,717 | INFO     | [job] job monitor thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:44,783 | INFO     | [data] control thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,125 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,269 | INFO     | [data] copytool_in thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,271 | INFO     | [job] validate thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,332 | INFO     | [payload] control thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,341 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 13:42:27] 2025-11-29 12:41:45,600 | INFO     | [job] control thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,629 | INFO     | [payload] failed_post thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,757 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:45,981 | INFO     | [data] copytool_out thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:46,093 | INFO     | [payload] validate_post thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:46,382 | INFO     | [job] queue monitor thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:47,645 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:41:54,096 | INFO     | job.realtimelogging is not enabled
[2025-11-29 13:42:27] 2025-11-29 12:41:55,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 13:42:27] 2025-11-29 12:42:12,153 | INFO     | PID=27429 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 13:42:27] 2025-11-29 12:42:12,153 | INFO     | .. there are 9 such processes running
[2025-11-29 13:42:27] 2025-11-29 12:42:12,155 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 13:42:27] 2025-11-29 12:42:12,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 13:42:27] 2025-11-29 12:42:12,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 13:42:27] 2025-11-29 12:42:15,618 | INFO     | [monitor] cgroup control has ended
[2025-11-29 13:42:27] 2025-11-29 12:42:16,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311956735808)>', '<ExcThread(monitor, started 140311514822400)>']
[2025-11-29 13:42:27] 2025-11-29 12:42:17,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 13:42:27] 2025-11-29 12:42:17,185 | INFO     | [monitor] control thread has ended
[2025-11-29 13:42:27] 2025-11-29 12:42:21,910 | INFO     | all workflow threads have been joined
[2025-11-29 13:42:27] 2025-11-29 12:42:21,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 13:42:27] 2025-11-29 12:42:21,911 | INFO     | traces error code: 0
[2025-11-29 13:42:27] 2025-11-29 12:42:21,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 13:42:27] 2025-11-29 12:42:22,205 [wrapper] ==== pilot stdout END ====
[2025-11-29 13:42:27] 2025-11-29 12:42:22,305 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 13:42:27] 2025-11-29 12:42:22,367 [wrapper] pilotpid: 27429
[2025-11-29 13:42:27] 2025-11-29 12:42:22,424 [wrapper] Pilot exit status: 0
[2025-11-29 13:42:27] 2025-11-29 12:42:22,853 [wrapper] pandaids: 6894239203
[2025-11-29 13:42:27] 2025-11-29 12:42:23,773 [wrapper] cleanup supervisor_pilot 22899 27430
[2025-11-29 13:42:27] 2025-11-29 12:42:23,887 [wrapper] Test setup, not cleaning
[2025-11-29 13:42:27] 2025-11-29 12:42:24,000 [wrapper] apfmon messages muted
[2025-11-29 13:42:27] 2025-11-29 12:42:24,091 [wrapper] ==== wrapper stdout END ====
[2025-11-29 13:42:27] 2025-11-29 12:42:24,201 [wrapper] ==== wrapper stderr END ====
[2025-11-29 13:42:27]  *** Error codes and diagnostics ***
[2025-11-29 13:42:27]     "exeErrorCode": 0,
[2025-11-29 13:42:27]     "exeErrorDiag": "",
[2025-11-29 13:42:27]     "pilotErrorCode": 0,
[2025-11-29 13:42:27]     "pilotErrorDiag": "",
[2025-11-29 13:42:27]  *** Listing of results directory ***
[2025-11-29 13:42:27] total 627412
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc    576529 Nov 26 04:33 pilot3.tar.gz
[2025-11-29 13:42:27] -rwx------. 1 boinc boinc     36292 Nov 26 04:55 runpilot2-wrapper.sh
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc      5112 Nov 26 04:55 queuedata.json
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc       100 Nov 29 03:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 13:42:27] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 03:22 run_atlas
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc       105 Nov 29 03:22 job.xml
[2025-11-29 13:42:27] -rw-r--r--. 2 boinc boinc 294530292 Nov 29 03:22 EVNT.47523935._000004.pool.root.1
[2025-11-29 13:42:27] -rw-r--r--. 2 boinc boinc     15847 Nov 29 03:22 start_atlas.sh
[2025-11-29 13:42:27] drwxrwx--x. 2 boinc boinc        68 Nov 29 03:22 shared
[2025-11-29 13:42:27] -rw-r--r--. 2 boinc boinc    589935 Nov 29 03:22 input.tar.gz
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc      6393 Nov 29 03:22 init_data.xml
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc         0 Nov 29 03:22 boinc_lockfile
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc      2607 Nov 29 03:23 pandaJob.out
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc    991834 Nov 29 03:27 agis_schedconf.cvmfs.json
[2025-11-29 13:42:27] drwx------. 5 boinc boinc      4096 Nov 29 03:27 pilot3
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc 332776736 Nov 29 13:38 HITS.47523939._000077.pool.root.1
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc       532 Nov 29 13:38 boinc_task_state.xml
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc      1017 Nov 29 13:39 memory_monitor_summary.json
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc   1516240 Nov 29 13:40 agis_ddmendpoints.agis.ALL.json
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc    744755 Nov 29 13:40 log.47523939._000077.job.log.tgz.1
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc      7769 Nov 29 13:41 heartbeat.json
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc        95 Nov 29 13:42 pilot_heartbeat.json
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc        29 Nov 29 13:42 wrapper_checkpoint.txt
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc      8192 Nov 29 13:42 boinc_mmap_file
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc      5143 Nov 29 13:42 pilotlog.txt
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc   4886184 Nov 29 13:42 log.47523939._000077.job.log.1
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc       357 Nov 29 13:42 output.list
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc       620 Nov 29 13:42 runtime_log
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc   5652480 Nov 29 13:42 result.tar.gz
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc      8833 Nov 29 13:42 runtime_log.err
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc       659 Nov 29 13:42 2g1KDmgnLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQtMKDmm4RZDo.diag
[2025-11-29 13:42:27] -rw-r--r--. 1 boinc boinc     20832 Nov 29 13:42 stderr.txt
[2025-11-29 13:42:27] HITS file was successfully produced:
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc 332776736 Nov 29 13:38 shared/HITS.pool.root.1
[2025-11-29 13:42:27]  *** Contents of shared directory: ***
[2025-11-29 13:42:27] total 618724
[2025-11-29 13:42:27] -rw-r--r--. 2 boinc boinc 294530292 Nov 29 03:22 ATLAS.root_0
[2025-11-29 13:42:27] -rw-r--r--. 2 boinc boinc     15847 Nov 29 03:22 start_atlas.sh
[2025-11-29 13:42:27] -rw-r--r--. 2 boinc boinc    589935 Nov 29 03:22 input.tar.gz
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc 332776736 Nov 29 13:38 HITS.pool.root.1
[2025-11-29 13:42:27] -rw-------. 1 boinc boinc   5652480 Nov 29 13:42 result.tar.gz
13:42:28 (23596): run_atlas exited; CPU time 141391.566494
13:42:28 (23596): called boinc_finish(0)

</stderr_txt>
]]>

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