Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:46 (3606023): wrapper (7.7.26015): starting
00:02:46 (3606023): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:02:46] Arguments: --nthreads 8
[2025-11-27 00:02:46] Threads: 8
[2025-11-27 00:02:46] Checking for CVMFS
[2025-11-27 00:02:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:48] 2.13.3.0 12275 31042 371348 153347 0 263 34950767 40960000 31852 16776704 25 190898954 99.681 160107579 36137 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:48] CVMFS is ok
[2025-11-27 00:02:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:48] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:48] Checking for apptainer binary...
[2025-11-27 00:02:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:48] Running /usr/bin/apptainer --version
[2025-11-27 00:02:48] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:49] c7-11-11.aglt2.org
[2025-11-27 00:02:49] apptainer works
[2025-11-27 00:02:49] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:02:49] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:02:49] Starting ATLAS job with PandaID=6898175030
[2025-11-27 00:02:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:39:53]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:39:53] 2025-11-27 21:39:17,383 | INFO     | time since job start (59720s) is within the limit (172800.0s)
[2025-11-27 16:39:53] 2025-11-27 21:39:18,549 | INFO     | monitor loop #3596: job 0:6898175030 is in state 'finished'
[2025-11-27 16:39:53] 2025-11-27 21:39:18,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,000 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 16:39:53] 2025-11-27 21:39:19,009 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.7878281250005
[2025-11-27 16:39:53] 2025-11-27 21:39:19,028 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898175030/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,033 | INFO     | extracted standard info from prmon json
[2025-11-27 16:39:53] 2025-11-27 21:39:19,033 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:39:53] 2025-11-27 21:39:19,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:39:53] 2025-11-27 21:39:19,061 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:39:53] 2025-11-27 21:39:19,062 | INFO     | sum of square deviations: 288300290087.07764
[2025-11-27 16:39:53] 2025-11-27 21:39:19,081 | INFO     | sum of deviations: 2771862230722.4224
[2025-11-27 16:39:53] 2025-11-27 21:39:19,081 | INFO     | mean x: 1764249753.7192624
[2025-11-27 16:39:53] 2025-11-27 21:39:19,081 | INFO     | mean y: 2903817.089139344
[2025-11-27 16:39:53] 2025-11-27 21:39:19,082 | INFO     | intersect: -16959469881.593977
[2025-11-27 16:39:53] 2025-11-27 21:39:19,084 | INFO     | chi2: 9.744837903843274
[2025-11-27 16:39:53] 2025-11-27 21:39:19,085 | INFO     | sum of square deviations: 283892883173.78125
[2025-11-27 16:39:53] 2025-11-27 21:39:19,113 | INFO     | sum of deviations: 3037748427225.691
[2025-11-27 16:39:53] 2025-11-27 21:39:19,114 | INFO     | mean x: 1764249601.22966
[2025-11-27 16:39:53] 2025-11-27 21:39:19,114 | INFO     | mean y: 2913010.857878476
[2025-11-27 16:39:53] 2025-11-27 21:39:19,114 | INFO     | intersect: -18875145471.81391
[2025-11-27 16:39:53] 2025-11-27 21:39:19,115 | INFO     | chi2: 7.466850152112681
[2025-11-27 16:39:53] 2025-11-27 21:39:19,115 | INFO     | current chi2=7.466850152112681 (change=23.376353452038195 %)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,115 | INFO     | right removable region: 970
[2025-11-27 16:39:53] 2025-11-27 21:39:19,116 | INFO     | sum of square deviations: 283891621202.3248
[2025-11-27 16:39:53] 2025-11-27 21:39:19,131 | INFO     | sum of deviations: 2376382107430.946
[2025-11-27 16:39:53] 2025-11-27 21:39:19,131 | INFO     | mean x: 1764249906.23069
[2025-11-27 16:39:53] 2025-11-27 21:39:19,131 | INFO     | mean y: 2917496.330587024
[2025-11-27 16:39:53] 2025-11-27 21:39:19,131 | INFO     | intersect: -14765154532.168583
[2025-11-27 16:39:53] 2025-11-27 21:39:19,132 | INFO     | chi2: 5.554497250863301
[2025-11-27 16:39:53] 2025-11-27 21:39:19,132 | INFO     | current chi2=5.554497250863301 (change=43.00061934665266 %)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,133 | INFO     | sum of square deviations: 279528174945.3002
[2025-11-27 16:39:53] 2025-11-27 21:39:19,149 | INFO     | sum of deviations: 2102841723730.647
[2025-11-27 16:39:53] 2025-11-27 21:39:19,149 | INFO     | mean x: 1764250058.741201
[2025-11-27 16:39:53] 2025-11-27 21:39:19,149 | INFO     | mean y: 2927047.4585921327
[2025-11-27 16:39:53] 2025-11-27 21:39:19,149 | INFO     | intersect: -13269218543.37935
[2025-11-27 16:39:53] 2025-11-27 21:39:19,150 | INFO     | chi2: 3.473868613143875
[2025-11-27 16:39:53] 2025-11-27 21:39:19,150 | INFO     | current chi2=3.473868613143875 (change=37.458451120775095 %)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,150 | INFO     | sum of square deviations: 275210131431.0217
[2025-11-27 16:39:53] 2025-11-27 21:39:19,166 | INFO     | sum of deviations: 2007993578789.217
[2025-11-27 16:39:53] 2025-11-27 21:39:19,166 | INFO     | mean x: 1764250211.2434964
[2025-11-27 16:39:53] 2025-11-27 21:39:19,166 | INFO     | mean y: 2930396.6742976066
[2025-11-27 16:39:53] 2025-11-27 21:39:19,166 | INFO     | intersect: -12869426725.98626
[2025-11-27 16:39:53] 2025-11-27 21:39:19,167 | INFO     | chi2: 3.360531781678572
[2025-11-27 16:39:53] 2025-11-27 21:39:19,167 | INFO     | current chi2=3.360531781678572 (change=3.2625537717942805 %)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,167 | INFO     | left removable region: 30
[2025-11-27 16:39:53] 2025-11-27 21:39:19,168 | INFO     | sum of square deviations: 257560507230.51044
[2025-11-27 16:39:53] 2025-11-27 21:39:19,183 | INFO     | sum of deviations: 2116042680974.914
[2025-11-27 16:39:53] 2025-11-27 21:39:19,183 | INFO     | mean x: 1764250485.7659574
[2025-11-27 16:39:53] 2025-11-27 21:39:19,183 | INFO     | mean y: 2948124.0723404256
[2025-11-27 16:39:53] 2025-11-27 21:39:19,183 | INFO     | intersect: -14491623920.198177
[2025-11-27 16:39:53] 2025-11-27 21:39:19,184 | INFO     | chi2: 0.7543348258942993
[2025-11-27 16:39:53] 2025-11-27 21:39:19,199 | INFO     | current memory leak: 8.22 B/s (using 940 data points, chi2=0.75)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,200 | INFO     | could have reported an average CPU frequency of 3282 MHz (36 samples)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | ..............................
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . Timing measurements:
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . get job = 0 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . initial setup = 4 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . payload setup = 53 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . stage-in = 0 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . payload execution = 59567 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . stage-out = 4 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | . log creation = 0 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,201 | INFO     | ..............................
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | 
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | job summary report
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | --------------------------------------------------
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | PanDA job id: 6898175030
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | task id: 47556173
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | errors: (none)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | pilot state: finished 
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | transexitcode: 0
[2025-11-27 16:39:53] 2025-11-27 21:39:19,283 | INFO     | exeerrorcode: 0
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | exeerrordiag: 
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | exitcode: 0
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | exitmsg: OK
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | cpuconsumptiontime: 201512 s
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | nevents: 1000
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | neventsw: 0
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | pid: 3643625
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | pgrp: 3643625
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | corecount: 8
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | event service: False
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 34: 2284404, 41: 2284822, 46: 2284850, 59625: 2337225, 59630: 2346219, 59634: 2346275, 59642:
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | --------------------------------------------------
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | 
[2025-11-27 16:39:53] 2025-11-27 21:39:19,284 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 16:39:53] 2025-11-27 21:39:19,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | job 6898175030 has completed (purged errors)
[2025-11-27 16:39:53] 2025-11-27 21:39:19,313 | INFO     | overall cleanup function is called
[2025-11-27 16:39:53] 2025-11-27 21:39:20,332 | INFO     | --- collectZombieJob: --- 10, [3643625]
[2025-11-27 16:39:53] 2025-11-27 21:39:20,332 | INFO     | zombie collector waiting for pid 3643625
[2025-11-27 16:39:53] 2025-11-27 21:39:20,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:39:53] 2025-11-27 21:39:20,332 | INFO     | collected zombie processes
[2025-11-27 16:39:53] 2025-11-27 21:39:20,332 | INFO     | will attempt to kill all subprocesses of pid=3643625
[2025-11-27 16:39:53] 2025-11-27 21:39:21,149 | INFO     | process IDs to be killed: [3643625] (in reverse order)
[2025-11-27 16:39:53] 2025-11-27 21:39:21,340 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:39:53] 2025-11-27 21:39:21,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:39:53] 2025-11-27 21:39:21,364 | INFO     | did not find any defunct processes belonging to 3643625
[2025-11-27 16:39:53] 2025-11-27 21:39:21,385 | INFO     | did not find any defunct processes belonging to 3643625
[2025-11-27 16:39:53] 2025-11-27 21:39:21,386 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:39:53] 2025-11-27 21:39:21,386 | INFO     | ready for new job
[2025-11-27 16:39:53] 2025-11-27 21:39:21,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:39:53] 2025-11-27 21:39:21,391 | INFO     | ***************************************
[2025-11-27 16:39:53] 2025-11-27 21:39:21,391 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:39:53] 2025-11-27 21:39:21,391 | INFO     | ***************************************
[2025-11-27 16:39:53] 2025-11-27 21:39:21,391 | INFO     | 
[2025-11-27 16:39:53] 2025-11-27 21:39:21,394 | INFO     | architecture information:
[2025-11-27 16:39:53] 2025-11-27 21:39:21,395 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:39:53] 2025-11-27 21:39:21,416 | INFO     | cat /etc/os-release:
[2025-11-27 16:39:53] NAME="CentOS Linux"
[2025-11-27 16:39:53] VERSION="7 (Core)"
[2025-11-27 16:39:53] ID="centos"
[2025-11-27 16:39:53] ID_LIKE="rhel fedora"
[2025-11-27 16:39:53] VERSION_ID="7"
[2025-11-27 16:39:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:39:53] ANSI_COLOR="0;31"
[2025-11-27 16:39:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:39:53] HOME_URL="https://www.centos.org/"
[2025-11-27 16:39:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:39:53] 
[2025-11-27 16:39:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:39:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:39:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:39:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:39:53] 
[2025-11-27 16:39:53] 2025-11-27 21:39:21,416 | INFO     | ***************************************
[2025-11-27 16:39:53] 2025-11-27 21:39:21,939 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 16:39:53] 2025-11-27 21:39:21,974 | INFO     | sufficient remaining disk space (81187045376 B)
[2025-11-27 16:39:53] 2025-11-27 21:39:21,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:39:53] 2025-11-27 21:39:21,974 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:39:53] 2025-11-27 21:39:21,974 | INFO     | update_server=False
[2025-11-27 16:39:53] 2025-11-27 21:39:21,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:39:53] 2025-11-27 21:39:21,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:39:53] 2025-11-27 21:39:22,049 | INFO     | all payload control threads have been joined
[2025-11-27 16:39:53] 2025-11-27 21:39:22,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:39:53] 2025-11-27 21:39:22,072 | INFO     | aborting loop
[2025-11-27 16:39:53] 2025-11-27 21:39:22,400 | INFO     | all job control threads have been joined
[2025-11-27 16:39:53] 2025-11-27 21:39:22,629 | INFO     | all data control threads have been joined
[2025-11-27 16:39:53] 2025-11-27 21:39:22,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:39:53] 2025-11-27 21:39:22,981 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,054 | INFO     | [payload] control thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,079 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,407 | INFO     | [job] control thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,479 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,635 | INFO     | [data] control thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:23,798 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:24,062 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:24,123 | INFO     | [job] validate thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:24,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:24,241 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:24,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:39:53] 2025-11-27 21:39:24,554 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:24,977 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:25,302 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:25,983 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:39:53] 2025-11-27 21:39:42,276 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:39:53] 2025-11-27 21:39:43,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140338125444928)>', '<ExcThread(monitor, started 140337175586560)>']
[2025-11-27 16:39:53] 2025-11-27 21:39:48,866 | INFO     | all workflow threads have been joined
[2025-11-27 16:39:53] 2025-11-27 21:39:48,866 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:39:53] 2025-11-27 21:39:48,866 | INFO     | traces error code: 0
[2025-11-27 16:39:53] 2025-11-27 21:39:48,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:39:53] 2025-11-27 21:39:52,342 | INFO     | PID=3615317 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:39:53] 2025-11-27 21:39:52,342 | INFO     | .. there are 38 such processes running
[2025-11-27 16:39:53] 2025-11-27 21:39:52,342 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:39:53] 2025-11-27 21:39:52,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:39:53] 2025-11-27 21:39:52,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:39:53] 2025-11-27 21:39:52,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:39:53] 2025-11-27 21:39:52,343 | INFO     | [monitor] control thread has ended
[2025-11-27 16:39:53] 2025-11-27 21:39:52,846 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:39:53] 2025-11-27 21:39:52,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:39:53] 2025-11-27 21:39:52,946 [wrapper] pilotpid: 3615317
[2025-11-27 16:39:53] 2025-11-27 21:39:52,955 [wrapper] Pilot exit status: 0
[2025-11-27 16:39:53] 2025-11-27 21:39:52,970 [wrapper] pandaids: 6898175030
[2025-11-27 16:39:53] 2025-11-27 21:39:53,070 [wrapper] cleanup supervisor_pilot 3351111 3615318
[2025-11-27 16:39:53] 2025-11-27 21:39:53,086 [wrapper] Test setup, not cleaning
[2025-11-27 16:39:53] 2025-11-27 21:39:53,102 [wrapper] apfmon messages muted
[2025-11-27 16:39:53] 2025-11-27 21:39:53,108 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:39:53] 2025-11-27 21:39:53,111 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:39:53]  *** Error codes and diagnostics ***
[2025-11-27 16:39:53]     "exeErrorCode": 0,
[2025-11-27 16:39:53]     "exeErrorDiag": "",
[2025-11-27 16:39:53]     "pilotErrorCode": 0,
[2025-11-27 16:39:53]     "pilotErrorDiag": "",
[2025-11-27 16:39:53]  *** Listing of results directory ***
[2025-11-27 16:39:53] total 1329256
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 16:39:53] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:39:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 16:39:53] -rw-r--r--. 2 boincer umatlas 413314743 Nov 27 00:02 EVNT.47483658._003168.pool.root.1
[2025-11-27 16:39:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 16:39:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 16:39:53] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:02 input.tar.gz
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 16:39:53] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas       532 Nov 27 16:26 boinc_task_state.xml
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas 924529260 Nov 27 16:38 HITS.47556173._001244.pool.root.1
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas      1049 Nov 27 16:38 memory_monitor_summary.json
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas        95 Nov 27 16:39 pilot_heartbeat.json
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas   2123188 Nov 27 16:39 log.47556173._001244.job.log.tgz.1
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas      6904 Nov 27 16:39 init_data.xml
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas      8586 Nov 27 16:39 heartbeat.json
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:39 boinc_mmap_file
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:39 wrapper_checkpoint.txt
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas       823 Nov 27 16:39 pilotlog.txt
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas   7570641 Nov 27 16:39 log.47556173._001244.job.log.1
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas       353 Nov 27 16:39 output.list
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:39 runtime_log
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas   9717760 Nov 27 16:39 result.tar.gz
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 16:39 runtime_log.err
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas       660 Nov 27 16:39 Da9LDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOtMKDmHds0Kn.diag
[2025-11-27 16:39:53] -rw-r--r--. 1 boincer umatlas     21321 Nov 27 16:39 stderr.txt
[2025-11-27 16:39:53] HITS file was successfully produced:
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas 924529260 Nov 27 16:38 shared/HITS.pool.root.1
[2025-11-27 16:39:53]  *** Contents of shared directory: ***
[2025-11-27 16:39:53] total 1316588
[2025-11-27 16:39:53] -rw-r--r--. 2 boincer umatlas 413314743 Nov 27 00:02 ATLAS.root_0
[2025-11-27 16:39:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 16:39:53] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:02 input.tar.gz
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas 924529260 Nov 27 16:38 HITS.pool.root.1
[2025-11-27 16:39:53] -rw-------. 1 boincer umatlas   9717760 Nov 27 16:39 result.tar.gz
16:39:55 (3606023): run_atlas exited; CPU time 200699.906591
16:39:55 (3606023): called boinc_finish(0)

</stderr_txt>
]]>

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