Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:29 (3792645): wrapper (7.7.26015): starting
00:03:29 (3792645): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:03:30] Arguments: --nthreads 8
[2025-11-27 00:03:30] Threads: 8
[2025-11-27 00:03:30] Checking for CVMFS
[2025-11-27 00:03:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:33] 2.13.2.0 14352 35362 225656 153347 1 518 35917230 40960001 26017 16776704 0 275867984 99.679 222611868 48624 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:03:33] CVMFS is ok
[2025-11-27 00:03:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:33] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:33] Checking for apptainer binary...
[2025-11-27 00:03:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:33] Running /usr/bin/apptainer --version
[2025-11-27 00:03:33] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:33] c-208-36.aglt2.org
[2025-11-27 00:03:33] apptainer works
[2025-11-27 00:03:33] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:03:33] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:03:34] Starting ATLAS job with PandaID=6898177488
[2025-11-27 00:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:40:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:40:11] 2025-11-27 22:39:03,526 | INFO     | this job has now completed (state=finished)
[2025-11-27 17:40:11] 2025-11-27 22:39:03,526 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 17:40:11] 2025-11-27 22:39:03,526 | INFO     | log transfer has been attempted: DONE
[2025-11-27 17:40:11] 2025-11-27 22:39:03,526 | INFO     | job 6898177488 has finished - writing final server update
[2025-11-27 17:40:11] 2025-11-27 22:39:03,526 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 17:40:11] 2025-11-27 22:39:03,528 | INFO     | executing command: lscpu
[2025-11-27 17:40:11] 2025-11-27 22:39:03,590 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:40:11] 2025-11-27 22:39:03,815 | INFO     | monitor loop #3883: job 0:6898177488 is in state 'finished'
[2025-11-27 17:40:11] 2025-11-27 22:39:03,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:40:11] 2025-11-27 22:39:04,059 | INFO     | time since job start (63240s) is within the limit (172800.0s)
[2025-11-27 17:40:11] 2025-11-27 22:39:06,065 | INFO     | time since job start (63242s) is within the limit (172800.0s)
[2025-11-27 17:40:11] 2025-11-27 22:39:06,318 | INFO     | monitor loop #3884: job 0:6898177488 is in state 'finished'
[2025-11-27 17:40:11] 2025-11-27 22:39:06,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,070 | INFO     | time since job start (63244s) is within the limit (172800.0s)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,133 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:40:11] 2025-11-27 22:39:08,138 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.622039062502
[2025-11-27 17:40:11] 2025-11-27 22:39:08,151 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6898177488/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,152 | INFO     | extracted standard info from prmon json
[2025-11-27 17:40:11] 2025-11-27 22:39:08,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:40:11] 2025-11-27 22:39:08,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:40:11] 2025-11-27 22:39:08,162 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:40:11] 2025-11-27 22:39:08,163 | INFO     | sum of square deviations: 341777281006.8153
[2025-11-27 17:40:11] 2025-11-27 22:39:08,173 | INFO     | sum of deviations: 2313836205380.21
[2025-11-27 17:40:11] 2025-11-27 22:39:08,173 | INFO     | mean x: 1764251612.53727
[2025-11-27 17:40:11] 2025-11-27 22:39:08,173 | INFO     | mean y: 2828676.1113262344
[2025-11-27 17:40:11] 2025-11-27 22:39:08,173 | INFO     | intersect: -11941175455.65468
[2025-11-27 17:40:11] 2025-11-27 22:39:08,174 | INFO     | chi2: 17.927646332202254
[2025-11-27 17:40:11] 2025-11-27 22:39:08,174 | INFO     | sum of square deviations: 336838454119.942
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | sum of deviations: 2682930424050.1006
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | mean x: 1764251460.044747
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | mean y: 2840075.3239299613
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | intersect: -14049486373.554136
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | chi2: 14.219579778869695
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | current chi2=14.219579778869695 (change=20.683510175409932 %)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,184 | INFO     | right removable region: 1027
[2025-11-27 17:40:11] 2025-11-27 22:39:08,185 | INFO     | sum of square deviations: 336837485439.9419
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | sum of deviations: 1893954613607.3894
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | mean x: 1764251765.044747
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | mean y: 2841637.1001945524
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | intersect: -9917113576.9321
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | chi2: 13.45911984085504
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | current chi2=13.45911984085504 (change=24.9253382655184 %)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,194 | INFO     | left removable region: 10
[2025-11-27 17:40:11] 2025-11-27 22:39:08,195 | INFO     | sum of square deviations: 326139078432.4088
[2025-11-27 17:40:11] 2025-11-27 22:39:08,202 | INFO     | sum of deviations: 1975438478042.2097
[2025-11-27 17:40:11] 2025-11-27 22:39:08,202 | INFO     | mean x: 1764251734.5614552
[2025-11-27 17:40:11] 2025-11-27 22:39:08,202 | INFO     | mean y: 2867344.6125860373
[2025-11-27 17:40:11] 2025-11-27 22:39:08,202 | INFO     | intersect: -10683281577.365492
[2025-11-27 17:40:11] 2025-11-27 22:39:08,202 | INFO     | chi2: 5.480222044303953
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | current memory leak: 6.06 B/s (using 1017 data points, chi2=5.48)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | could have reported an average CPU frequency of 3773 MHz (38 samples)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | ..............................
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . Timing measurements:
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . get job = 0 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . initial setup = 4 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . payload setup = 95 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . stage-in = 0 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . payload execution = 63049 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . stage-out = 3 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | . log creation = 1 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,203 | INFO     | ..............................
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | 
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | job summary report
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | --------------------------------------------------
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | PanDA job id: 6898177488
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | task id: 47556161
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | errors: (none)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,529 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | pilot state: finished 
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | transexitcode: 0
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | exeerrorcode: 0
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | exeerrordiag: 
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | exitcode: 0
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | exitmsg: OK
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | cpuconsumptiontime: 140356 s
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | nevents: 1000
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | neventsw: 0
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | pid: 3909109
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | pgrp: 3909109
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | corecount: 8
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | event service: False
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | sizes: {0: 2284094, 1: 2284293, 11: 2284293, 22: 2284321, 33: 2284349, 40: 2284667, 44: 2284823, 63145: 2339532, 63146: 2339531, 63149: 2348583, 63151: 2348639, 63
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | --------------------------------------------------
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | 
[2025-11-27 17:40:11] 2025-11-27 22:39:08,530 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-11-27 17:40:11] 2025-11-27 22:39:08,555 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | job 6898177488 has completed (purged errors)
[2025-11-27 17:40:11] 2025-11-27 22:39:08,556 | INFO     | overall cleanup function is called
[2025-11-27 17:40:11] 2025-11-27 22:39:09,571 | INFO     | --- collectZombieJob: --- 10, [3909109]
[2025-11-27 17:40:11] 2025-11-27 22:39:09,572 | INFO     | zombie collector waiting for pid 3909109
[2025-11-27 17:40:11] 2025-11-27 22:39:09,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:40:11] 2025-11-27 22:39:09,572 | INFO     | collected zombie processes
[2025-11-27 17:40:11] 2025-11-27 22:39:09,572 | INFO     | will attempt to kill all subprocesses of pid=3909109
[2025-11-27 17:40:11] 2025-11-27 22:39:09,575 | INFO     | PID=3823974 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 17:40:11] 2025-11-27 22:39:09,575 | INFO     | .. there are 29 such processes running
[2025-11-27 17:40:11] 2025-11-27 22:39:09,888 | INFO     | process IDs to be killed: [3909109] (in reverse order)
[2025-11-27 17:40:11] 2025-11-27 22:39:10,023 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:40:11] 2025-11-27 22:39:10,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:40:11] 2025-11-27 22:39:10,044 | INFO     | did not find any defunct processes belonging to 3909109
[2025-11-27 17:40:11] 2025-11-27 22:39:10,063 | INFO     | did not find any defunct processes belonging to 3909109
[2025-11-27 17:40:11] 2025-11-27 22:39:10,064 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:40:11] 2025-11-27 22:39:10,064 | INFO     | ready for new job
[2025-11-27 17:40:11] 2025-11-27 22:39:10,064 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:40:11] 2025-11-27 22:39:10,068 | INFO     | ***************************************
[2025-11-27 17:40:11] 2025-11-27 22:39:10,068 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:40:11] 2025-11-27 22:39:10,068 | INFO     | ***************************************
[2025-11-27 17:40:11] 2025-11-27 22:39:10,068 | INFO     | 
[2025-11-27 17:40:11] 2025-11-27 22:39:10,072 | INFO     | architecture information:
[2025-11-27 17:40:11] 2025-11-27 22:39:10,073 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:40:11] 2025-11-27 22:39:10,088 | INFO     | cat /etc/os-release:
[2025-11-27 17:40:11] NAME="CentOS Linux"
[2025-11-27 17:40:11] VERSION="7 (Core)"
[2025-11-27 17:40:11] ID="centos"
[2025-11-27 17:40:11] ID_LIKE="rhel fedora"
[2025-11-27 17:40:11] VERSION_ID="7"
[2025-11-27 17:40:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:40:11] ANSI_COLOR="0;31"
[2025-11-27 17:40:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:40:11] HOME_URL="https://www.centos.org/"
[2025-11-27 17:40:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:40:11] 
[2025-11-27 17:40:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:40:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:40:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:40:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:40:11] 
[2025-11-27 17:40:11] 2025-11-27 22:39:10,089 | INFO     | ***************************************
[2025-11-27 17:40:11] 2025-11-27 22:39:10,591 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-11-27 17:40:11] 2025-11-27 22:39:10,606 | INFO     | sufficient remaining disk space (160435273728 B)
[2025-11-27 17:40:11] 2025-11-27 22:39:10,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:40:11] 2025-11-27 22:39:10,607 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:40:11] 2025-11-27 22:39:10,607 | INFO     | update_server=False
[2025-11-27 17:40:11] 2025-11-27 22:39:10,607 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:40:11] 2025-11-27 22:39:10,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:40:11] 2025-11-27 22:39:10,608 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:40:11] 2025-11-27 22:39:10,608 | INFO     | aborting loop
[2025-11-27 17:40:11] 2025-11-27 22:39:10,767 | INFO     | all job control threads have been joined
[2025-11-27 17:40:11] 2025-11-27 22:39:11,094 | INFO     | all payload control threads have been joined
[2025-11-27 17:40:11] 2025-11-27 22:39:11,453 | INFO     | all data control threads have been joined
[2025-11-27 17:40:11] 2025-11-27 22:39:11,612 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:11,613 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:11,773 | INFO     | [job] control thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:11,781 | INFO     | [job] validate thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:11,789 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,099 | INFO     | [payload] control thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,143 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,306 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,329 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,394 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,458 | INFO     | [data] control thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,614 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:12,821 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:13,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:40:11] 2025-11-27 22:39:14,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:40:11] 2025-11-27 22:39:14,252 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:18,040 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:21,038 | INFO     | job.realtimelogging is not enabled
[2025-11-27 17:40:11] 2025-11-27 22:39:22,039 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:40:11] 2025-11-27 22:39:42,147 | INFO     | PID=3823974 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:40:11] 2025-11-27 22:39:42,147 | INFO     | .. there are 29 such processes running
[2025-11-27 17:40:11] 2025-11-27 22:39:42,147 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:40:11] 2025-11-27 22:39:42,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:40:11] 2025-11-27 22:39:42,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:40:11] 2025-11-27 22:39:54,420 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:40:11] 2025-11-27 22:39:54,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140080684697408)>', '<ExcThread(monitor, started 140080182175488)>']
[2025-11-27 17:40:11] 2025-11-27 22:39:55,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:40:11] 2025-11-27 22:39:55,209 | INFO     | [monitor] control thread has ended
[2025-11-27 17:40:11] 2025-11-27 22:39:59,502 | INFO     | all workflow threads have been joined
[2025-11-27 17:40:11] 2025-11-27 22:39:59,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:40:11] 2025-11-27 22:39:59,502 | INFO     | traces error code: 0
[2025-11-27 17:40:11] 2025-11-27 22:39:59,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:40:11] 2025-11-27 22:39:59,761 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:40:11] 2025-11-27 22:39:59,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:40:11] 2025-11-27 22:39:59,766 [wrapper] pilotpid: 3823974
[2025-11-27 17:40:11] 2025-11-27 22:39:59,769 [wrapper] Pilot exit status: 0
[2025-11-27 17:40:11] 2025-11-27 22:39:59,784 [wrapper] pandaids: 6898177488
[2025-11-27 17:40:11] 2025-11-27 22:39:59,890 [wrapper] cleanup supervisor_pilot 1442798 3823975
[2025-11-27 17:40:11] 2025-11-27 22:39:59,894 [wrapper] Test setup, not cleaning
[2025-11-27 17:40:11] 2025-11-27 22:39:59,897 [wrapper] apfmon messages muted
[2025-11-27 17:40:11] 2025-11-27 22:39:59,899 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:40:11] 2025-11-27 22:39:59,902 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:40:11]  *** Error codes and diagnostics ***
[2025-11-27 17:40:11]     "exeErrorCode": 0,
[2025-11-27 17:40:11]     "exeErrorDiag": "",
[2025-11-27 17:40:11]     "pilotErrorCode": 0,
[2025-11-27 17:40:11]     "pilotErrorDiag": "",
[2025-11-27 17:40:11]  *** Listing of results directory ***
[2025-11-27 17:40:11] total 1316596
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 17:40:11] -rwx------. 1 boincer umatlas     36292 Nov 25 23:06 runpilot2-wrapper.sh
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:40:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 17:40:11] -rw-r--r--. 2 boincer umatlas 410146112 Nov 27 00:03 EVNT.47483658._002467.pool.root.1
[2025-11-27 17:40:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 17:40:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 17:40:11] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 00:03 input.tar.gz
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:03 pandaJob.out
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 17:40:11] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:23 boinc_task_state.xml
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas 913544250 Nov 27 17:38 HITS.47556161._004500.pool.root.1
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas        95 Nov 27 17:38 pilot_heartbeat.json
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas      1089 Nov 27 17:38 memory_monitor_summary.json
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 17:39 init_data.xml
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas   2169203 Nov 27 17:39 log.47556161._004500.job.log.tgz.1
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas      8633 Nov 27 17:39 heartbeat.json
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas      4898 Nov 27 17:39 pilotlog.txt
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas   8117870 Nov 27 17:39 log.47556161._004500.job.log.1
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas       353 Nov 27 17:39 output.list
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:40 runtime_log
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas  10311680 Nov 27 17:40 result.tar.gz
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas       666 Nov 27 17:40 WzlKDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtuMKDmY2T6Dm.diag
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas      9361 Nov 27 17:40 runtime_log.err
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:40 wrapper_checkpoint.txt
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:40 boinc_mmap_file
[2025-11-27 17:40:11] -rw-r--r--. 1 boincer umatlas     21839 Nov 27 17:40 stderr.txt
[2025-11-27 17:40:11] HITS file was successfully produced:
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas 913544250 Nov 27 17:38 shared/HITS.pool.root.1
[2025-11-27 17:40:11]  *** Contents of shared directory: ***
[2025-11-27 17:40:11] total 1303348
[2025-11-27 17:40:11] -rw-r--r--. 2 boincer umatlas 410146112 Nov 27 00:03 ATLAS.root_0
[2025-11-27 17:40:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 17:40:11] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 00:03 input.tar.gz
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas 913544250 Nov 27 17:38 HITS.pool.root.1
[2025-11-27 17:40:11] -rw-------. 1 boincer umatlas  10311680 Nov 27 17:40 result.tar.gz
17:40:13 (3792645): run_atlas exited; CPU time 141231.565464
17:40:13 (3792645): called boinc_finish(0)

</stderr_txt>
]]>

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