Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:29 (380729): wrapper (7.7.26015): starting
00:02:29 (380729): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:02:29] Arguments: --nthreads 12
[2025-11-27 00:02:29] Threads: 12
[2025-11-27 00:02:29] Checking for CVMFS
[2025-11-27 00:02:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:31] 2.13.2.0 9514 36722 469792 153347 3 443 37005392 40960001 23688 16776704 0 100902044 99.579 105270222 35543 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:02:31] CVMFS is ok
[2025-11-27 00:02:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:31] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:31] Checking for apptainer binary...
[2025-11-27 00:02:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:31] Running /usr/bin/apptainer --version
[2025-11-27 00:02:31] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:32] c-211-33-3.aglt2.org
[2025-11-27 00:02:32] apptainer works
[2025-11-27 00:02:32] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:02:32] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:02:32] Starting ATLAS job with PandaID=6898175858
[2025-11-27 00:02:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:43:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:43:44] 2025-11-28 03:42:53,559 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 22:43:44] 2025-11-28 03:42:53,559 | INFO     | log transfer has been attempted: DONE
[2025-11-27 22:43:44] 2025-11-28 03:42:53,559 | INFO     | job 6898175858 has finished - writing final server update
[2025-11-27 22:43:44] 2025-11-28 03:42:53,559 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 22:43:44] 2025-11-28 03:42:53,560 | INFO     | executing command: lscpu
[2025-11-27 22:43:44] 2025-11-28 03:42:53,621 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 22:43:44] 2025-11-28 03:42:54,874 | INFO     | time since job start (81544s) is within the limit (172800.0s)
[2025-11-27 22:43:44] 2025-11-28 03:42:55,017 | INFO     | monitor loop #4554: job 0:6898175858 is in state 'finished'
[2025-11-27 22:43:44] 2025-11-28 03:42:55,018 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:43:44] 2025-11-28 03:42:56,880 | INFO     | time since job start (81546s) is within the limit (172800.0s)
[2025-11-27 22:43:44] 2025-11-28 03:42:57,522 | INFO     | monitor loop #4555: job 0:6898175858 is in state 'finished'
[2025-11-27 22:43:44] 2025-11-28 03:42:57,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:43:44] 2025-11-28 03:42:58,395 | INFO     | PID=392949 has CPU usage=18.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:43:44] 2025-11-28 03:42:58,395 | INFO     | .. there are 25 such processes running
[2025-11-27 22:43:44] 2025-11-28 03:42:59,396 | INFO     | time since job start (81549s) is within the limit (172800.0s)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,027 | INFO     | monitor loop #4556: job 0:6898175858 is in state 'finished'
[2025-11-27 22:43:44] 2025-11-28 03:43:00,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,063 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:43:44] 2025-11-28 03:43:00,075 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2610.7409687499994
[2025-11-27 22:43:44] 2025-11-28 03:43:00,094 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6898175858/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,094 | INFO     | extracted standard info from prmon json
[2025-11-27 22:43:44] 2025-11-28 03:43:00,094 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:43:44] 2025-11-28 03:43:00,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:43:44] 2025-11-28 03:43:00,115 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:43:44] 2025-11-28 03:43:00,117 | INFO     | sum of square deviations: 737733051139.6083
[2025-11-27 22:43:44] 2025-11-28 03:43:00,150 | INFO     | sum of deviations: 7373890055799.243
[2025-11-27 22:43:44] 2025-11-28 03:43:00,150 | INFO     | mean x: 1764260680.0164795
[2025-11-27 22:43:44] 2025-11-28 03:43:00,150 | INFO     | mean y: 3450762.8074906366
[2025-11-27 22:43:44] 2025-11-28 03:43:00,150 | INFO     | intersect: -17630928317.965485
[2025-11-27 22:43:44] 2025-11-28 03:43:00,152 | INFO     | chi2: 21.152533954666943
[2025-11-27 22:43:44] 2025-11-28 03:43:00,154 | INFO     | sum of square deviations: 729476936570.466
[2025-11-27 22:43:44] 2025-11-28 03:43:00,188 | INFO     | sum of deviations: 7952751590063.512
[2025-11-27 22:43:44] 2025-11-28 03:43:00,188 | INFO     | mean x: 1764260527.5390978
[2025-11-27 22:43:44] 2025-11-28 03:43:00,188 | INFO     | mean y: 3461451.2112781955
[2025-11-27 22:43:44] 2025-11-28 03:43:00,188 | INFO     | intersect: -19230492375.53525
[2025-11-27 22:43:44] 2025-11-28 03:43:00,190 | INFO     | chi2: 17.50406108022647
[2025-11-27 22:43:44] 2025-11-28 03:43:00,190 | INFO     | current chi2=17.50406108022647 (change=17.248396254839715 %)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,190 | INFO     | right removable region: 1329
[2025-11-27 22:43:44] 2025-11-28 03:43:00,192 | INFO     | sum of square deviations: 729472037050.4663
[2025-11-27 22:43:44] 2025-11-28 03:43:00,229 | INFO     | sum of deviations: 6706879027188.608
[2025-11-27 22:43:44] 2025-11-28 03:43:00,230 | INFO     | mean x: 1764260832.5390978
[2025-11-27 22:43:44] 2025-11-28 03:43:00,230 | INFO     | mean y: 3463076.82481203
[2025-11-27 22:43:44] 2025-11-28 03:43:00,230 | INFO     | intersect: -16217424599.81711
[2025-11-27 22:43:44] 2025-11-28 03:43:00,231 | INFO     | chi2: 16.578755553389733
[2025-11-27 22:43:44] 2025-11-28 03:43:00,232 | INFO     | current chi2=16.578755553389733 (change=21.622839188342653 %)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,232 | INFO     | left removable region: 10
[2025-11-27 22:43:44] 2025-11-28 03:43:00,233 | INFO     | sum of square deviations: 711521191720.6211
[2025-11-27 22:43:44] 2025-11-28 03:43:00,266 | INFO     | sum of deviations: 6819654572250.658
[2025-11-27 22:43:44] 2025-11-28 03:43:00,267 | INFO     | mean x: 1764260802.0887036
[2025-11-27 22:43:44] 2025-11-28 03:43:00,267 | INFO     | mean y: 3487649.2850644425
[2025-11-27 22:43:44] 2025-11-28 03:43:00,267 | INFO     | intersect: -16906267654.715874
[2025-11-27 22:43:44] 2025-11-28 03:43:00,268 | INFO     | chi2: 8.351016002889658
[2025-11-27 22:43:44] 2025-11-28 03:43:00,269 | INFO     | current memory leak: 9.58 B/s (using 1319 data points, chi2=8.35)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,270 | INFO     | could have reported an average CPU frequency of 2607 MHz (48 samples)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,270 | INFO     | ..............................
[2025-11-27 22:43:44] 2025-11-28 03:43:00,270 | INFO     | . Timing measurements:
[2025-11-27 22:43:44] 2025-11-28 03:43:00,270 | INFO     | . get job = 1 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,270 | INFO     | . initial setup = 7 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,271 | INFO     | . payload setup = 54 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,271 | INFO     | . stage-in = 0 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,271 | INFO     | . payload execution = 81409 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,271 | INFO     | . stage-out = 3 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,271 | INFO     | . log creation = 0 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,271 | INFO     | ..............................
[2025-11-27 22:43:44] 2025-11-28 03:43:00,365 | INFO     | 
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | job summary report
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | --------------------------------------------------
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | PanDA job id: 6898175858
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | task id: 47556161
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | errors: (none)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | pilot state: finished 
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | transexitcode: 0
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | exeerrorcode: 0
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | exeerrordiag: 
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | exitcode: 0
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | exitmsg: OK
[2025-11-27 22:43:44] 2025-11-28 03:43:00,366 | INFO     | cpuconsumptiontime: 257127 s
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | nevents: 1000
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | neventsw: 0
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | pid: 418946
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | pgrp: 418946
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | corecount: 12
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | event service: False
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 14: 2284320, 25: 2284348, 34: 2284638, 37: 2284794, 81468: 2345903, 81472: 2354953, 81480: 2355143}
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | --------------------------------------------------
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | 
[2025-11-27 22:43:44] 2025-11-28 03:43:00,367 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 22:43:44] 2025-11-28 03:43:00,391 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,391 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,391 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,391 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:43:44] 2025-11-28 03:43:00,393 | INFO     | job 6898175858 has completed (purged errors)
[2025-11-27 22:43:44] 2025-11-28 03:43:00,393 | INFO     | overall cleanup function is called
[2025-11-27 22:43:44] 2025-11-28 03:43:01,415 | INFO     | --- collectZombieJob: --- 10, [418946]
[2025-11-27 22:43:44] 2025-11-28 03:43:01,415 | INFO     | zombie collector waiting for pid 418946
[2025-11-27 22:43:44] 2025-11-28 03:43:01,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:43:44] 2025-11-28 03:43:01,415 | INFO     | collected zombie processes
[2025-11-27 22:43:44] 2025-11-28 03:43:01,415 | INFO     | will attempt to kill all subprocesses of pid=418946
[2025-11-27 22:43:44] 2025-11-28 03:43:01,842 | INFO     | process IDs to be killed: [418946] (in reverse order)
[2025-11-27 22:43:44] 2025-11-28 03:43:01,958 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:43:44] 2025-11-28 03:43:01,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:43:44] 2025-11-28 03:43:01,973 | INFO     | did not find any defunct processes belonging to 418946
[2025-11-27 22:43:44] 2025-11-28 03:43:01,987 | INFO     | did not find any defunct processes belonging to 418946
[2025-11-27 22:43:44] 2025-11-28 03:43:01,988 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:43:44] 2025-11-28 03:43:01,989 | INFO     | ready for new job
[2025-11-27 22:43:44] 2025-11-28 03:43:01,989 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:43:44] 2025-11-28 03:43:01,994 | INFO     | ***************************************
[2025-11-27 22:43:44] 2025-11-28 03:43:01,994 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:43:44] 2025-11-28 03:43:01,994 | INFO     | ***************************************
[2025-11-27 22:43:44] 2025-11-28 03:43:01,994 | INFO     | 
[2025-11-27 22:43:44] 2025-11-28 03:43:02,000 | INFO     | architecture information:
[2025-11-27 22:43:44] 2025-11-28 03:43:02,009 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:43:44] 2025-11-28 03:43:02,037 | INFO     | cat /etc/os-release:
[2025-11-27 22:43:44] NAME="CentOS Linux"
[2025-11-27 22:43:44] VERSION="7 (Core)"
[2025-11-27 22:43:44] ID="centos"
[2025-11-27 22:43:44] ID_LIKE="rhel fedora"
[2025-11-27 22:43:44] VERSION_ID="7"
[2025-11-27 22:43:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:43:44] ANSI_COLOR="0;31"
[2025-11-27 22:43:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:43:44] HOME_URL="https://www.centos.org/"
[2025-11-27 22:43:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:43:44] 
[2025-11-27 22:43:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:43:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:43:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:43:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:43:44] 
[2025-11-27 22:43:44] 2025-11-28 03:43:02,037 | INFO     | ***************************************
[2025-11-27 22:43:44] 2025-11-28 03:43:02,543 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 22:43:44] 2025-11-28 03:43:02,628 | INFO     | sufficient remaining disk space (120864112640 B)
[2025-11-27 22:43:44] 2025-11-28 03:43:02,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:43:44] 2025-11-28 03:43:02,628 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:43:44] 2025-11-28 03:43:02,628 | INFO     | update_server=False
[2025-11-27 22:43:44] 2025-11-28 03:43:02,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:43:44] 2025-11-28 03:43:02,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:43:44] 2025-11-28 03:43:02,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:43:44] 2025-11-28 03:43:03,101 | INFO     | all data control threads have been joined
[2025-11-27 22:43:44] 2025-11-28 03:43:03,369 | INFO     | all payload control threads have been joined
[2025-11-27 22:43:44] 2025-11-28 03:43:03,543 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:43:44] 2025-11-28 03:43:03,544 | INFO     | aborting loop
[2025-11-27 22:43:44] 2025-11-28 03:43:03,634 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:03,637 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:03,692 | INFO     | [job] validate thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:03,734 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:03,855 | INFO     | all job control threads have been joined
[2025-11-27 22:43:44] 2025-11-28 03:43:04,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,107 | INFO     | [data] control thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,375 | INFO     | [payload] control thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,549 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,635 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,709 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,861 | INFO     | [job] control thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:04,918 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:05,030 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:05,119 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:05,378 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:43:44] 2025-11-28 03:43:06,384 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:06,727 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:43:44] 2025-11-28 03:43:21,077 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:43:44] 2025-11-28 03:43:22,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401017960256)>', '<ExcThread(monitor, started 140400358565632)>']
[2025-11-27 22:43:44] 2025-11-28 03:43:27,967 | INFO     | all workflow threads have been joined
[2025-11-27 22:43:44] 2025-11-28 03:43:27,968 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:43:44] 2025-11-28 03:43:27,968 | INFO     | traces error code: 0
[2025-11-27 22:43:44] 2025-11-28 03:43:27,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:43:44] 2025-11-28 03:43:32,916 | INFO     | PID=392949 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 22:43:44] 2025-11-28 03:43:32,916 | INFO     | .. there are 25 such processes running
[2025-11-27 22:43:44] 2025-11-28 03:43:32,917 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:43:44] 2025-11-28 03:43:32,917 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:43:44] 2025-11-28 03:43:32,917 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:43:44] 2025-11-28 03:43:32,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:43:44] 2025-11-28 03:43:32,918 | INFO     | [monitor] control thread has ended
[2025-11-27 22:43:44] 2025-11-28 03:43:33,082 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:43:44] 2025-11-28 03:43:33,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:43:44] 2025-11-28 03:43:33,086 [wrapper] pilotpid: 392949
[2025-11-27 22:43:44] 2025-11-28 03:43:33,089 [wrapper] Pilot exit status: 0
[2025-11-27 22:43:44] 2025-11-28 03:43:33,105 [wrapper] pandaids: 6898175858
[2025-11-27 22:43:44] 2025-11-28 03:43:33,176 [wrapper] cleanup supervisor_pilot  142349 392950
[2025-11-27 22:43:44] 2025-11-28 03:43:33,183 [wrapper] Test setup, not cleaning
[2025-11-27 22:43:44] 2025-11-28 03:43:33,189 [wrapper] apfmon messages muted
[2025-11-27 22:43:44] 2025-11-28 03:43:33,193 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:43:44] 2025-11-28 03:43:33,195 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:43:44]  *** Error codes and diagnostics ***
[2025-11-27 22:43:44]     "exeErrorCode": 0,
[2025-11-27 22:43:44]     "exeErrorDiag": "",
[2025-11-27 22:43:44]     "pilotErrorCode": 0,
[2025-11-27 22:43:44]     "pilotErrorDiag": "",
[2025-11-27 22:43:44]  *** Listing of results directory ***
[2025-11-27 22:43:44] total 1318544
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 22:43:44] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:43:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 22:43:44] -rw-r--r--. 2 boincer umatlas 410536082 Nov 27 00:02 EVNT.47483658._002457.pool.root.1
[2025-11-27 22:43:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 22:43:44] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 22:43:44] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:02 input.tar.gz
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 22:43:44] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:26 boinc_task_state.xml
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 22:38 init_data.xml
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas 910358004 Nov 27 22:41 HITS.47556161._004399.pool.root.1
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas      1061 Nov 27 22:42 memory_monitor_summary.json
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:42 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas   2819906 Nov 27 22:42 log.47556161._004399.job.log.tgz.1
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas      8624 Nov 27 22:43 heartbeat.json
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas        95 Nov 27 22:43 pilot_heartbeat.json
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas       822 Nov 27 22:43 pilotlog.txt
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas   9867524 Nov 27 22:43 log.47556161._004399.job.log.1
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas       353 Nov 27 22:43 output.list
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:43 runtime_log
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas  12707840 Nov 27 22:43 result.tar.gz
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 22:43 runtime_log.err
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas       662 Nov 27 22:43 lFuLDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHtMKDmcv8lKo.diag
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:43 wrapper_checkpoint.txt
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:43 boinc_mmap_file
[2025-11-27 22:43:44] -rw-r--r--. 1 boincer umatlas     21876 Nov 27 22:43 stderr.txt
[2025-11-27 22:43:44] HITS file was successfully produced:
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas 910358004 Nov 27 22:41 shared/HITS.pool.root.1
[2025-11-27 22:43:44]  *** Contents of shared directory: ***
[2025-11-27 22:43:44] total 1302952
[2025-11-27 22:43:44] -rw-r--r--. 2 boincer umatlas 410536082 Nov 27 00:02 ATLAS.root_0
[2025-11-27 22:43:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 22:43:44] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:02 input.tar.gz
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas 910358004 Nov 27 22:41 HITS.pool.root.1
[2025-11-27 22:43:44] -rw-------. 1 boincer umatlas  12707840 Nov 27 22:43 result.tar.gz
22:43:46 (380729): run_atlas exited; CPU time 258653.036957
22:43:46 (380729): called boinc_finish(0)

</stderr_txt>
]]>

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