Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:46 (3155229): wrapper (7.7.26015): starting
00:02:46 (3155229): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:46] Arguments: --nthreads 9
[2025-11-27 00:02:46] Threads: 9
[2025-11-27 00:02:46] Checking for CVMFS
[2025-11-27 00:02:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:49] 2.13.2.0 6122 36113 384496 153347 1 425 30657562 40960001 17767 16776704 0 75197299 99.609 80084389 39901 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:02:49] CVMFS is ok
[2025-11-27 00:02:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:49] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:49] Checking for apptainer binary...
[2025-11-27 00:02:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:49] Running /usr/bin/apptainer --version
[2025-11-27 00:02:49] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:49] c-210-35-2.aglt2.org
[2025-11-27 00:02:49] apptainer works
[2025-11-27 00:02:50] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:50] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:50] Starting ATLAS job with PandaID=6898175874
[2025-11-27 00:02:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:20:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:20:59] 2025-11-27 23:20:23,654 | INFO     | monitor loop #4274: job 0:6898175874 is in state 'finished'
[2025-11-27 18:20:59] 2025-11-27 23:20:23,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,015 | INFO     | time since job start (65788s) is within the limit (172800.0s)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,162 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:20:59] 2025-11-27 23:20:25,165 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2796.9016428571435
[2025-11-27 18:20:59] 2025-11-27 23:20:25,175 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898175874/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,176 | INFO     | extracted standard info from prmon json
[2025-11-27 18:20:59] 2025-11-27 23:20:25,176 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:20:59] 2025-11-27 23:20:25,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:20:59] 2025-11-27 23:20:25,204 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:20:59] 2025-11-27 23:20:25,210 | INFO     | sum of square deviations: 386292815730.999
[2025-11-27 18:20:59] 2025-11-27 23:20:25,242 | INFO     | sum of deviations: 3500220284308.726
[2025-11-27 18:20:59] 2025-11-27 23:20:25,242 | INFO     | mean x: 1764252777.4990706
[2025-11-27 18:20:59] 2025-11-27 23:20:25,242 | INFO     | mean y: 3048356.218401487
[2025-11-27 18:20:59] 2025-11-27 23:20:25,242 | INFO     | intersect: -15982942340.410301
[2025-11-27 18:20:59] 2025-11-27 23:20:25,244 | INFO     | chi2: 13.722583807367105
[2025-11-27 18:20:59] 2025-11-27 23:20:25,245 | INFO     | sum of square deviations: 380933352660.92505
[2025-11-27 18:20:59] 2025-11-27 23:20:25,270 | INFO     | sum of deviations: 3874818628582.498
[2025-11-27 18:20:59] 2025-11-27 23:20:25,270 | INFO     | mean x: 1764252625.0084033
[2025-11-27 18:20:59] 2025-11-27 23:20:25,270 | INFO     | mean y: 3059015.16713352
[2025-11-27 18:20:59] 2025-11-27 23:20:25,270 | INFO     | intersect: -17942754574.41663
[2025-11-27 18:20:59] 2025-11-27 23:20:25,271 | INFO     | chi2: 10.718859091099164
[2025-11-27 18:20:59] 2025-11-27 23:20:25,271 | INFO     | current chi2=10.718859091099164 (change=21.88891507920951 %)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,271 | INFO     | right removable region: 1070
[2025-11-27 18:20:59] 2025-11-27 23:20:25,273 | INFO     | sum of square deviations: 380932040550.92474
[2025-11-27 18:20:59] 2025-11-27 23:20:25,294 | INFO     | sum of deviations: 3037967812753.008
[2025-11-27 18:20:59] 2025-11-27 23:20:25,294 | INFO     | mean x: 1764252930.0084033
[2025-11-27 18:20:59] 2025-11-27 23:20:25,295 | INFO     | mean y: 3061504.887955182
[2025-11-27 18:20:59] 2025-11-27 23:20:25,295 | INFO     | intersect: -14067016735.75875
[2025-11-27 18:20:59] 2025-11-27 23:20:25,296 | INFO     | chi2: 9.405933339939612
[2025-11-27 18:20:59] 2025-11-27 23:20:25,296 | INFO     | current chi2=9.405933339939612 (change=31.456542936979965 %)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,297 | INFO     | sum of square deviations: 375621145836.1965
[2025-11-27 18:20:59] 2025-11-27 23:20:25,318 | INFO     | sum of deviations: 2645038538880.337
[2025-11-27 18:20:59] 2025-11-27 23:20:25,318 | INFO     | mean x: 1764253082.5168855
[2025-11-27 18:20:59] 2025-11-27 23:20:25,318 | INFO     | mean y: 3072788.703564728
[2025-11-27 18:20:59] 2025-11-27 23:20:25,318 | INFO     | intersect: -12420395504.613983
[2025-11-27 18:20:59] 2025-11-27 23:20:25,319 | INFO     | chi2: 6.452897471641738
[2025-11-27 18:20:59] 2025-11-27 23:20:25,320 | INFO     | current chi2=6.452897471641738 (change=31.395458181259368 %)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,321 | INFO     | sum of square deviations: 370360027301.4574
[2025-11-27 18:20:59] 2025-11-27 23:20:25,344 | INFO     | sum of deviations: 2383296999685.3145
[2025-11-27 18:20:59] 2025-11-27 23:20:25,345 | INFO     | mean x: 1764253235.0226202
[2025-11-27 18:20:59] 2025-11-27 23:20:25,345 | INFO     | mean y: 3080370.4033930255
[2025-11-27 18:20:59] 2025-11-27 23:20:25,345 | INFO     | intersect: -11350033172.52234
[2025-11-27 18:20:59] 2025-11-27 23:20:25,346 | INFO     | chi2: 5.153186255532785
[2025-11-27 18:20:59] 2025-11-27 23:20:25,346 | INFO     | current chi2=5.153186255532785 (change=20.141513511112432 %)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,346 | INFO     | left removable region: 30
[2025-11-27 18:20:59] 2025-11-27 23:20:25,347 | INFO     | sum of square deviations: 348802198045.0158
[2025-11-27 18:20:59] 2025-11-27 23:20:25,380 | INFO     | sum of deviations: 2601349167946.8403
[2025-11-27 18:20:59] 2025-11-27 23:20:25,380 | INFO     | mean x: 1764253509.5307693
[2025-11-27 18:20:59] 2025-11-27 23:20:25,380 | INFO     | mean y: 3101280.989423077
[2025-11-27 18:20:59] 2025-11-27 23:20:25,380 | INFO     | intersect: -13154612244.866438
[2025-11-27 18:20:59] 2025-11-27 23:20:25,386 | INFO     | chi2: 1.1068500318186145
[2025-11-27 18:20:59] 2025-11-27 23:20:25,386 | INFO     | current memory leak: 7.46 B/s (using 1040 data points, chi2=1.11)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,387 | INFO     | could have reported an average CPU frequency of 2837 MHz (39 samples)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,387 | INFO     | ..............................
[2025-11-27 18:20:59] 2025-11-27 23:20:25,387 | INFO     | . Timing measurements:
[2025-11-27 18:20:59] 2025-11-27 23:20:25,387 | INFO     | . get job = 0 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,387 | INFO     | . initial setup = 4 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,388 | INFO     | . payload setup = 49 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,388 | INFO     | . stage-in = 0 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,388 | INFO     | . payload execution = 65644 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,388 | INFO     | . stage-out = 4 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,388 | INFO     | . log creation = 0 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,388 | INFO     | ..............................
[2025-11-27 18:20:59] 2025-11-27 23:20:25,556 | INFO     | 
[2025-11-27 18:20:59] 2025-11-27 23:20:25,557 | INFO     | job summary report
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | --------------------------------------------------
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | PanDA job id: 6898175874
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | task id: 47556161
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | errors: (none)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | pilot state: finished 
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | transexitcode: 0
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | exeerrorcode: 0
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | exeerrordiag: 
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | exitcode: 0
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | exitmsg: OK
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | cpuconsumptiontime: 242116 s
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | nevents: 1000
[2025-11-27 18:20:59] 2025-11-27 23:20:25,558 | INFO     | neventsw: 0
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | pid: 3167550
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | pgrp: 3167550
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | corecount: 9
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | event service: False
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | sizes: {0: 2283986, 1: 2284070, 2: 2284070, 3: 2284241, 4: 2284269, 15: 2284297, 26: 2284453, 31: 2284743, 37: 2284771, 65698: 2341198, 65703: 2350192, 65705: 2350
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | --------------------------------------------------
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | 
[2025-11-27 18:20:59] 2025-11-27 23:20:25,559 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 18:20:59] 2025-11-27 23:20:25,612 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,612 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,612 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,612 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,613 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,614 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:20:59] 2025-11-27 23:20:25,614 | INFO     | job 6898175874 has completed (purged errors)
[2025-11-27 18:20:59] 2025-11-27 23:20:25,614 | INFO     | overall cleanup function is called
[2025-11-27 18:20:59] 2025-11-27 23:20:26,641 | INFO     | --- collectZombieJob: --- 10, [3167550]
[2025-11-27 18:20:59] 2025-11-27 23:20:26,641 | INFO     | zombie collector waiting for pid 3167550
[2025-11-27 18:20:59] 2025-11-27 23:20:26,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:20:59] 2025-11-27 23:20:26,641 | INFO     | collected zombie processes
[2025-11-27 18:20:59] 2025-11-27 23:20:26,641 | INFO     | will attempt to kill all subprocesses of pid=3167550
[2025-11-27 18:20:59] 2025-11-27 23:20:26,917 | INFO     | process IDs to be killed: [3167550] (in reverse order)
[2025-11-27 18:20:59] 2025-11-27 23:20:27,015 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:20:59] 2025-11-27 23:20:27,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:20:59] 2025-11-27 23:20:27,027 | INFO     | did not find any defunct processes belonging to 3167550
[2025-11-27 18:20:59] 2025-11-27 23:20:27,037 | INFO     | did not find any defunct processes belonging to 3167550
[2025-11-27 18:20:59] 2025-11-27 23:20:27,038 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:20:59] 2025-11-27 23:20:27,038 | INFO     | ready for new job
[2025-11-27 18:20:59] 2025-11-27 23:20:27,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:20:59] 2025-11-27 23:20:27,043 | INFO     | ***************************************
[2025-11-27 18:20:59] 2025-11-27 23:20:27,043 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:20:59] 2025-11-27 23:20:27,043 | INFO     | ***************************************
[2025-11-27 18:20:59] 2025-11-27 23:20:27,043 | INFO     | 
[2025-11-27 18:20:59] 2025-11-27 23:20:27,046 | INFO     | architecture information:
[2025-11-27 18:20:59] 2025-11-27 23:20:27,047 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:20:59] 2025-11-27 23:20:27,062 | INFO     | cat /etc/os-release:
[2025-11-27 18:20:59] NAME="CentOS Linux"
[2025-11-27 18:20:59] VERSION="7 (Core)"
[2025-11-27 18:20:59] ID="centos"
[2025-11-27 18:20:59] ID_LIKE="rhel fedora"
[2025-11-27 18:20:59] VERSION_ID="7"
[2025-11-27 18:20:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:20:59] ANSI_COLOR="0;31"
[2025-11-27 18:20:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:20:59] HOME_URL="https://www.centos.org/"
[2025-11-27 18:20:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:20:59] 
[2025-11-27 18:20:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:20:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:20:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:20:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:20:59] 
[2025-11-27 18:20:59] 2025-11-27 23:20:27,062 | INFO     | ***************************************
[2025-11-27 18:20:59] 2025-11-27 23:20:27,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 18:20:59] 2025-11-27 23:20:27,622 | INFO     | sufficient remaining disk space (70652002304 B)
[2025-11-27 18:20:59] 2025-11-27 23:20:27,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:20:59] 2025-11-27 23:20:27,623 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:20:59] 2025-11-27 23:20:27,623 | INFO     | update_server=False
[2025-11-27 18:20:59] 2025-11-27 23:20:27,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:20:59] 2025-11-27 23:20:27,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:20:59] 2025-11-27 23:20:27,624 | INFO     | aborting loop
[2025-11-27 18:20:59] 2025-11-27 23:20:27,949 | INFO     | all job control threads have been joined
[2025-11-27 18:20:59] 2025-11-27 23:20:28,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:20:59] 2025-11-27 23:20:28,192 | INFO     | all data control threads have been joined
[2025-11-27 18:20:59] 2025-11-27 23:20:28,629 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:28,630 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:28,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:20:59] 2025-11-27 23:20:28,756 | INFO     | all payload control threads have been joined
[2025-11-27 18:20:59] 2025-11-27 23:20:28,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:28,955 | INFO     | [job] control thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,198 | INFO     | [data] control thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,329 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,362 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,595 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,739 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,762 | INFO     | [payload] control thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,846 | INFO     | [job] validate thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:29,912 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:30,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:20:59] 2025-11-27 23:20:30,759 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:31,580 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:32,022 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:20:59] 2025-11-27 23:20:51,014 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:20:59] 2025-11-27 23:20:52,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697215833920)>', '<ExcThread(monitor, started 139696873129728)>']
[2025-11-27 18:20:59] 2025-11-27 23:20:57,113 | INFO     | all workflow threads have been joined
[2025-11-27 18:20:59] 2025-11-27 23:20:57,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:20:59] 2025-11-27 23:20:57,113 | INFO     | traces error code: 0
[2025-11-27 18:20:59] 2025-11-27 23:20:57,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:20:59] 2025-11-27 23:20:58,839 | INFO     | PID=3159492 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:20:59] 2025-11-27 23:20:58,840 | INFO     | .. there are 18 such processes running
[2025-11-27 18:20:59] 2025-11-27 23:20:58,840 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:20:59] 2025-11-27 23:20:58,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:20:59] 2025-11-27 23:20:58,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:20:59] 2025-11-27 23:20:58,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:20:59] 2025-11-27 23:20:58,840 | INFO     | [monitor] control thread has ended
[2025-11-27 18:20:59] 2025-11-27 23:20:59,001 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:20:59] 2025-11-27 23:20:59,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:20:59] 2025-11-27 23:20:59,006 [wrapper] pilotpid: 3159492
[2025-11-27 18:20:59] 2025-11-27 23:20:59,009 [wrapper] Pilot exit status: 0
[2025-11-27 18:20:59] 2025-11-27 23:20:59,020 [wrapper] pandaids: 6898175874
[2025-11-27 18:20:59] 2025-11-27 23:20:59,077 [wrapper] cleanup supervisor_pilot 1164951 3159493
[2025-11-27 18:20:59] 2025-11-27 23:20:59,079 [wrapper] Test setup, not cleaning
[2025-11-27 18:20:59] 2025-11-27 23:20:59,083 [wrapper] apfmon messages muted
[2025-11-27 18:20:59] 2025-11-27 23:20:59,085 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:20:59] 2025-11-27 23:20:59,088 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:20:59]  *** Error codes and diagnostics ***
[2025-11-27 18:20:59]     "exeErrorCode": 0,
[2025-11-27 18:20:59]     "exeErrorDiag": "",
[2025-11-27 18:20:59]     "pilotErrorCode": 0,
[2025-11-27 18:20:59]     "pilotErrorDiag": "",
[2025-11-27 18:20:59]  *** Listing of results directory ***
[2025-11-27 18:20:59] total 1324408
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 18:20:59] -rwx------. 1 boincer umatlas     36292 Nov 25 23:00 runpilot2-wrapper.sh
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:20:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 18:20:59] -rw-r--r--. 2 boincer umatlas 409529520 Nov 27 00:02 EVNT.47483658._002459.pool.root.1
[2025-11-27 18:20:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 18:20:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 18:20:59] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:02 input.tar.gz
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:02 pandaJob.out
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 18:20:59] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:06 boinc_task_state.xml
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 18:12 init_data.xml
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas 920520480 Nov 27 18:19 HITS.47556161._004415.pool.root.1
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas      1059 Nov 27 18:20 memory_monitor_summary.json
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas   2346709 Nov 27 18:20 log.47556161._004415.job.log.tgz.1
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas        95 Nov 27 18:20 pilot_heartbeat.json
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas      8634 Nov 27 18:20 heartbeat.json
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:20 wrapper_checkpoint.txt
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas       823 Nov 27 18:20 pilotlog.txt
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:20 boinc_mmap_file
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas   8766690 Nov 27 18:20 log.47556161._004415.job.log.1
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas       353 Nov 27 18:20 output.list
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:20 runtime_log
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas  11130880 Nov 27 18:20 result.tar.gz
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas       662 Nov 27 18:20 sPEMDmssLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYtMKDmgQFJcn.diag
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 18:20 runtime_log.err
[2025-11-27 18:20:59] -rw-r--r--. 1 boincer umatlas     21385 Nov 27 18:20 stderr.txt
[2025-11-27 18:20:59] HITS file was successfully produced:
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas 920520480 Nov 27 18:19 shared/HITS.pool.root.1
[2025-11-27 18:20:59]  *** Contents of shared directory: ***
[2025-11-27 18:20:59] total 1310356
[2025-11-27 18:20:59] -rw-r--r--. 2 boincer umatlas 409529520 Nov 27 00:02 ATLAS.root_0
[2025-11-27 18:20:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 18:20:59] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:02 input.tar.gz
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas 920520480 Nov 27 18:19 HITS.pool.root.1
[2025-11-27 18:20:59] -rw-------. 1 boincer umatlas  11130880 Nov 27 18:20 result.tar.gz
18:21:00 (3155229): run_atlas exited; CPU time 243233.037326
18:21:00 (3155229): called boinc_finish(0)

</stderr_txt>
]]>

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