Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:26 (3080784): wrapper (7.7.26015): starting
00:02:26 (3080784): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:02:26] Arguments: --nthreads 12
[2025-11-27 00:02:26] Threads: 12
[2025-11-27 00:02:26] Checking for CVMFS
[2025-11-27 00:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:29] 2.13.3.0 12348 31045 387128 153347 3 382 19918149 32935937 38624 16776704 0 157597053 99.496 198503046 35215 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:29] CVMFS is ok
[2025-11-27 00:02:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:29] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:29] Checking for apptainer binary...
[2025-11-27 00:02:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:29] Running /usr/bin/apptainer --version
[2025-11-27 00:02:29] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:29] c6-12-27-2.aglt2.org
[2025-11-27 00:02:29] apptainer works
[2025-11-27 00:02:29] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:02:29] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:02:30] Starting ATLAS job with PandaID=6898175837
[2025-11-27 00:02:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:37:56]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:37:56] 2025-11-27 21:37:11,360 | INFO     | monitor loop #3033: job 0:6898175837 is in state 'finished'
[2025-11-27 16:37:56] 2025-11-27 21:37:11,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:37:56] 2025-11-27 21:37:12,182 | INFO     | PID=3091364 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 16:37:56] 2025-11-27 21:37:12,183 | INFO     | .. there are 46 such processes running
[2025-11-27 16:37:56] 2025-11-27 21:37:13,184 | INFO     | time since job start (59616s) is within the limit (172800.0s)
[2025-11-27 16:37:56] 2025-11-27 21:37:13,866 | INFO     | monitor loop #3034: job 0:6898175837 is in state 'finished'
[2025-11-27 16:37:56] 2025-11-27 21:37:13,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:37:56] 2025-11-27 21:37:15,207 | INFO     | time since job start (59618s) is within the limit (172800.0s)
[2025-11-27 16:37:56] 2025-11-27 21:37:16,371 | INFO     | monitor loop #3035: job 0:6898175837 is in state 'finished'
[2025-11-27 16:37:56] 2025-11-27 21:37:16,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:37:56] 2025-11-27 21:37:17,214 | INFO     | time since job start (59620s) is within the limit (172800.0s)
[2025-11-27 16:37:56] 2025-11-27 21:37:18,876 | INFO     | monitor loop #3036: job 0:6898175837 is in state 'finished'
[2025-11-27 16:37:56] 2025-11-27 21:37:18,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:37:56] 2025-11-27 21:37:19,222 | INFO     | time since job start (59622s) is within the limit (172800.0s)
[2025-11-27 16:37:56] 2025-11-27 21:37:21,229 | INFO     | time since job start (59624s) is within the limit (172800.0s)
[2025-11-27 16:37:56] 2025-11-27 21:37:21,381 | INFO     | monitor loop #3037: job 0:6898175837 is in state 'finished'
[2025-11-27 16:37:56] 2025-11-27 21:37:21,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,285 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:37:56] 2025-11-27 21:37:22,313 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2673.2959895833333
[2025-11-27 16:37:56] 2025-11-27 21:37:22,334 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898175837/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,335 | INFO     | extracted standard info from prmon json
[2025-11-27 16:37:56] 2025-11-27 21:37:22,335 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:37:56] 2025-11-27 21:37:22,335 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:37:56] 2025-11-27 21:37:22,352 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:37:56] 2025-11-27 21:37:22,354 | INFO     | sum of square deviations: 287347892763.7433
[2025-11-27 16:37:56] 2025-11-27 21:37:22,376 | INFO     | sum of deviations: 2398245270215.6406
[2025-11-27 16:37:56] 2025-11-27 21:37:22,377 | INFO     | mean x: 1764249673.102564
[2025-11-27 16:37:56] 2025-11-27 21:37:22,377 | INFO     | mean y: 3473719.8235897436
[2025-11-27 16:37:56] 2025-11-27 21:37:22,377 | INFO     | intersect: -14721198151.970915
[2025-11-27 16:37:56] 2025-11-27 21:37:22,378 | INFO     | chi2: 18.082965407284604
[2025-11-27 16:37:56] 2025-11-27 21:37:22,379 | INFO     | sum of square deviations: 282950750429.07745
[2025-11-27 16:37:56] 2025-11-27 21:37:22,398 | INFO     | sum of deviations: 2818364425494.641
[2025-11-27 16:37:56] 2025-11-27 21:37:22,398 | INFO     | mean x: 1764249520.6340206
[2025-11-27 16:37:56] 2025-11-27 21:37:22,398 | INFO     | mean y: 3488284.4412371134
[2025-11-27 16:37:56] 2025-11-27 21:37:22,398 | INFO     | intersect: -17569527793.836388
[2025-11-27 16:37:56] 2025-11-27 21:37:22,399 | INFO     | chi2: 14.310339383131083
[2025-11-27 16:37:56] 2025-11-27 21:37:22,400 | INFO     | current chi2=14.310339383131083 (change=20.8628725387803 %)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,400 | INFO     | right removable region: 969
[2025-11-27 16:37:56] 2025-11-27 21:37:22,401 | INFO     | sum of square deviations: 282947120929.0773
[2025-11-27 16:37:56] 2025-11-27 21:37:22,420 | INFO     | sum of deviations: 1940752394879.884
[2025-11-27 16:37:56] 2025-11-27 21:37:22,420 | INFO     | mean x: 1764249825.6340206
[2025-11-27 16:37:56] 2025-11-27 21:37:22,420 | INFO     | mean y: 3489572.270103093
[2025-11-27 16:37:56] 2025-11-27 21:37:22,420 | INFO     | intersect: -12097612792.803568
[2025-11-27 16:37:56] 2025-11-27 21:37:22,421 | INFO     | chi2: 14.311522999681573
[2025-11-27 16:37:56] 2025-11-27 21:37:22,422 | INFO     | current chi2=14.311522999681573 (change=20.85632706062541 %)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,422 | INFO     | left removable region: 10
[2025-11-27 16:37:56] 2025-11-27 21:37:22,423 | INFO     | sum of square deviations: 273428498011.55957
[2025-11-27 16:37:56] 2025-11-27 21:37:22,442 | INFO     | sum of deviations: 2237351057168.969
[2025-11-27 16:37:56] 2025-11-27 21:37:22,442 | INFO     | mean x: 1764249795.2002087
[2025-11-27 16:37:56] 2025-11-27 21:37:22,442 | INFO     | mean y: 3515094.15641293
[2025-11-27 16:37:56] 2025-11-27 21:37:22,442 | INFO     | intersect: -14432603207.727575
[2025-11-27 16:37:56] 2025-11-27 21:37:22,443 | INFO     | chi2: 8.807394439771583
[2025-11-27 16:37:56] 2025-11-27 21:37:22,444 | INFO     | current memory leak: 8.18 B/s (using 959 data points, chi2=8.81)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | could have reported an average CPU frequency of 2648 MHz (36 samples)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | ..............................
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . Timing measurements:
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . get job = 0 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . initial setup = 4 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . payload setup = 47 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . stage-in = 0 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . payload execution = 59471 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . stage-out = 6 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | . log creation = 1 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,445 | INFO     | ..............................
[2025-11-27 16:37:56] 2025-11-27 21:37:22,545 | INFO     | 
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | job summary report
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | --------------------------------------------------
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | PanDA job id: 6898175837
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | task id: 47556161
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | errors: (none)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | pilot state: finished 
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | transexitcode: 0
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | exeerrorcode: 0
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | exeerrordiag: 
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | exitcode: 0
[2025-11-27 16:37:56] 2025-11-27 21:37:22,546 | INFO     | exitmsg: OK
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | cpuconsumptiontime: 270267 s
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | nevents: 1000
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | neventsw: 0
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | pid: 3129539
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | pgrp: 3129539
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | corecount: 12
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | event service: False
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | sizes: {0: 2284037, 1: 2284292, 2: 2284320, 13: 2284320, 24: 2284376, 30: 2284666, 35: 2284822, 59523: 2336545, 59524: 2336544, 59530: 2345594, 59533: 2345650, 595
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | --------------------------------------------------
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | 
[2025-11-27 16:37:56] 2025-11-27 21:37:22,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 16:37:56] 2025-11-27 21:37:22,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | job 6898175837 has completed (purged errors)
[2025-11-27 16:37:56] 2025-11-27 21:37:22,610 | INFO     | overall cleanup function is called
[2025-11-27 16:37:56] 2025-11-27 21:37:23,631 | INFO     | --- collectZombieJob: --- 10, [3129539]
[2025-11-27 16:37:56] 2025-11-27 21:37:23,631 | INFO     | zombie collector waiting for pid 3129539
[2025-11-27 16:37:56] 2025-11-27 21:37:23,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:37:56] 2025-11-27 21:37:23,631 | INFO     | collected zombie processes
[2025-11-27 16:37:56] 2025-11-27 21:37:23,631 | INFO     | will attempt to kill all subprocesses of pid=3129539
[2025-11-27 16:37:56] 2025-11-27 21:37:24,658 | INFO     | process IDs to be killed: [3129539] (in reverse order)
[2025-11-27 16:37:56] 2025-11-27 21:37:24,997 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:37:56] 2025-11-27 21:37:24,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:37:56] 2025-11-27 21:37:25,043 | INFO     | did not find any defunct processes belonging to 3129539
[2025-11-27 16:37:56] 2025-11-27 21:37:25,088 | INFO     | did not find any defunct processes belonging to 3129539
[2025-11-27 16:37:56] 2025-11-27 21:37:25,093 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:37:56] 2025-11-27 21:37:25,094 | INFO     | ready for new job
[2025-11-27 16:37:56] 2025-11-27 21:37:25,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:37:56] 2025-11-27 21:37:25,102 | INFO     | ***************************************
[2025-11-27 16:37:56] 2025-11-27 21:37:25,103 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:37:56] 2025-11-27 21:37:25,103 | INFO     | ***************************************
[2025-11-27 16:37:56] 2025-11-27 21:37:25,103 | INFO     | 
[2025-11-27 16:37:56] 2025-11-27 21:37:25,108 | INFO     | architecture information:
[2025-11-27 16:37:56] 2025-11-27 21:37:25,109 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:37:56] 2025-11-27 21:37:25,163 | INFO     | cat /etc/os-release:
[2025-11-27 16:37:56] NAME="CentOS Linux"
[2025-11-27 16:37:56] VERSION="7 (Core)"
[2025-11-27 16:37:56] ID="centos"
[2025-11-27 16:37:56] ID_LIKE="rhel fedora"
[2025-11-27 16:37:56] VERSION_ID="7"
[2025-11-27 16:37:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:37:56] ANSI_COLOR="0;31"
[2025-11-27 16:37:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:37:56] HOME_URL="https://www.centos.org/"
[2025-11-27 16:37:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:37:56] 
[2025-11-27 16:37:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:37:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:37:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:37:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:37:56] 
[2025-11-27 16:37:56] 2025-11-27 21:37:25,163 | INFO     | ***************************************
[2025-11-27 16:37:56] 2025-11-27 21:37:25,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 16:37:56] 2025-11-27 21:37:25,733 | INFO     | sufficient remaining disk space (87301292032 B)
[2025-11-27 16:37:56] 2025-11-27 21:37:25,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:37:56] 2025-11-27 21:37:25,734 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:37:56] 2025-11-27 21:37:25,734 | INFO     | update_server=False
[2025-11-27 16:37:56] 2025-11-27 21:37:25,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:37:56] 2025-11-27 21:37:25,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:37:56] 2025-11-27 21:37:25,735 | INFO     | aborting loop
[2025-11-27 16:37:56] 2025-11-27 21:37:25,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:37:56] 2025-11-27 21:37:26,102 | INFO     | all payload control threads have been joined
[2025-11-27 16:37:56] 2025-11-27 21:37:26,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:37:56] 2025-11-27 21:37:26,289 | INFO     | all data control threads have been joined
[2025-11-27 16:37:56] 2025-11-27 21:37:26,740 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,741 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,774 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,858 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,873 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,879 | INFO     | [job] validate thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:26,959 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:27,010 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:27,030 | INFO     | all job control threads have been joined
[2025-11-27 16:37:56] 2025-11-27 21:37:27,107 | INFO     | [payload] control thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:27,295 | INFO     | [data] control thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:27,476 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:27,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:37:56] 2025-11-27 21:37:27,731 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:37:56] 2025-11-27 21:37:27,752 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:28,036 | INFO     | [job] control thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:28,577 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:30,145 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:37:56] 2025-11-27 21:37:31,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043698788160)>', '<ExcThread(monitor, started 140043356194560)>']
[2025-11-27 16:37:56] 2025-11-27 21:37:36,347 | INFO     | all workflow threads have been joined
[2025-11-27 16:37:56] 2025-11-27 21:37:36,347 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:37:56] 2025-11-27 21:37:36,347 | INFO     | traces error code: 0
[2025-11-27 16:37:56] 2025-11-27 21:37:36,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:37:56] 2025-11-27 21:37:55,231 | INFO     | PID=3091364 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:37:56] 2025-11-27 21:37:55,231 | INFO     | .. there are 46 such processes running
[2025-11-27 16:37:56] 2025-11-27 21:37:55,231 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:37:56] 2025-11-27 21:37:55,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:37:56] 2025-11-27 21:37:55,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:37:56] 2025-11-27 21:37:55,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:37:56] 2025-11-27 21:37:55,232 | INFO     | [monitor] control thread has ended
[2025-11-27 16:37:56] 2025-11-27 21:37:55,456 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:37:56] 2025-11-27 21:37:55,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:37:56] 2025-11-27 21:37:55,515 [wrapper] pilotpid: 3091364
[2025-11-27 16:37:56] 2025-11-27 21:37:55,543 [wrapper] Pilot exit status: 0
[2025-11-27 16:37:56] 2025-11-27 21:37:55,624 [wrapper] pandaids: 6898175837
[2025-11-27 16:37:56] 2025-11-27 21:37:55,728 [wrapper] cleanup supervisor_pilot 2516417 3091365
[2025-11-27 16:37:56] 2025-11-27 21:37:55,731 [wrapper] Test setup, not cleaning
[2025-11-27 16:37:56] 2025-11-27 21:37:55,734 [wrapper] apfmon messages muted
[2025-11-27 16:37:56] 2025-11-27 21:37:55,736 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:37:56] 2025-11-27 21:37:55,738 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:37:56]  *** Error codes and diagnostics ***
[2025-11-27 16:37:56]     "exeErrorCode": 0,
[2025-11-27 16:37:56]     "exeErrorDiag": "",
[2025-11-27 16:37:56]     "pilotErrorCode": 0,
[2025-11-27 16:37:56]     "pilotErrorDiag": "",
[2025-11-27 16:37:56]  *** Listing of results directory ***
[2025-11-27 16:37:56] total 1328640
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 16:37:56] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:37:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 16:37:56] -rw-r--r--. 2 boincer umatlas 412044346 Nov 27 00:02 EVNT.47483658._002455.pool.root.1
[2025-11-27 16:37:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 16:37:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 16:37:56] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:02 input.tar.gz
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 16:37:56] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:04 boinc_task_state.xml
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas 925826251 Nov 27 16:35 HITS.47556161._004378.pool.root.1
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 16:36 init_data.xml
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas      1059 Nov 27 16:36 memory_monitor_summary.json
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas   2537864 Nov 27 16:36 log.47556161._004378.job.log.tgz.1
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas        95 Nov 27 16:37 pilot_heartbeat.json
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas      8625 Nov 27 16:37 heartbeat.json
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:37 boinc_mmap_file
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:37 wrapper_checkpoint.txt
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas       823 Nov 27 16:37 pilotlog.txt
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas   6832109 Nov 27 16:37 log.47556161._004378.job.log.1
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas       353 Nov 27 16:37 output.list
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:37 runtime_log
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas   9390080 Nov 27 16:37 result.tar.gz
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 16:37 runtime_log.err
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas       662 Nov 27 16:37 NuPLDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmysMKDmoIy4dm.diag
[2025-11-27 16:37:56] -rw-r--r--. 1 boincer umatlas     21905 Nov 27 16:37 stderr.txt
[2025-11-27 16:37:56] HITS file was successfully produced:
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas 925826251 Nov 27 16:35 shared/HITS.pool.root.1
[2025-11-27 16:37:56]  *** Contents of shared directory: ***
[2025-11-27 16:37:56] total 1316292
[2025-11-27 16:37:56] -rw-r--r--. 2 boincer umatlas 412044346 Nov 27 00:02 ATLAS.root_0
[2025-11-27 16:37:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 16:37:56] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:02 input.tar.gz
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas 925826251 Nov 27 16:35 HITS.pool.root.1
[2025-11-27 16:37:56] -rw-------. 1 boincer umatlas   9390080 Nov 27 16:37 result.tar.gz
16:37:58 (3080784): run_atlas exited; CPU time 272349.183730
16:37:58 (3080784): called boinc_finish(0)

</stderr_txt>
]]>

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