Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:11 (378035): wrapper (7.7.26015): starting
00:02:11 (378035): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:02:11] Arguments: --nthreads 12
[2025-11-27 00:02:11] Threads: 12
[2025-11-27 00:02:11] Checking for CVMFS
[2025-11-27 00:02:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:13] 2.13.2.0 9514 36722 469792 153347 0 443 37005392 40960001 23683 16776704 0 100896800 99.579 105270222 35543 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:02:13] CVMFS is ok
[2025-11-27 00:02:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:13] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:13] Checking for apptainer binary...
[2025-11-27 00:02:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:13] Running /usr/bin/apptainer --version
[2025-11-27 00:02:13] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:13] c-211-33-3.aglt2.org
[2025-11-27 00:02:13] apptainer works
[2025-11-27 00:02:13] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:02:13] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:02:14] Starting ATLAS job with PandaID=6898120878
[2025-11-27 00:02:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:54:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:54:09] 2025-11-28 03:53:19,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:54:09] 2025-11-28 03:53:21,216 | INFO     | time since job start (82189s) is within the limit (172800.0s)
[2025-11-27 22:54:09] 2025-11-28 03:53:21,839 | INFO     | monitor loop #4609: job 0:6898120878 is in state 'finished'
[2025-11-27 22:54:09] 2025-11-28 03:53:21,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:54:09] 2025-11-28 03:53:23,222 | INFO     | time since job start (82191s) is within the limit (172800.0s)
[2025-11-27 22:54:09] 2025-11-28 03:53:24,343 | INFO     | monitor loop #4610: job 0:6898120878 is in state 'finished'
[2025-11-27 22:54:09] 2025-11-28 03:53:24,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:54:09] 2025-11-28 03:53:25,229 | INFO     | time since job start (82193s) is within the limit (172800.0s)
[2025-11-27 22:54:09] 2025-11-28 03:53:26,870 | INFO     | monitor loop #4611: job 0:6898120878 is in state 'finished'
[2025-11-27 22:54:09] 2025-11-28 03:53:26,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:54:09] 2025-11-28 03:53:27,236 | INFO     | time since job start (82195s) is within the limit (172800.0s)
[2025-11-27 22:54:09] 2025-11-28 03:53:29,245 | INFO     | time since job start (82197s) is within the limit (172800.0s)
[2025-11-27 22:54:09] 2025-11-28 03:53:29,375 | INFO     | monitor loop #4612: job 0:6898120878 is in state 'finished'
[2025-11-27 22:54:09] 2025-11-28 03:53:29,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:54:09] 2025-11-28 03:53:31,252 | INFO     | time since job start (82199s) is within the limit (172800.0s)
[2025-11-27 22:54:09] 2025-11-28 03:53:31,867 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:54:09] 2025-11-28 03:53:31,884 | INFO     | monitor loop #4613: job 0:6898120878 is in state 'finished'
[2025-11-27 22:54:09] 2025-11-28 03:53:31,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:54:09] 2025-11-28 03:53:31,903 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2594.0306354166664
[2025-11-27 22:54:09] 2025-11-28 03:53:31,958 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6898120878/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:54:09] 2025-11-28 03:53:31,967 | INFO     | extracted standard info from prmon json
[2025-11-27 22:54:09] 2025-11-28 03:53:31,967 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:54:09] 2025-11-28 03:53:31,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:54:09] 2025-11-28 03:53:32,036 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:54:09] 2025-11-28 03:53:32,049 | INFO     | sum of square deviations: 754482264780.5903
[2025-11-27 22:54:09] 2025-11-28 03:53:32,110 | INFO     | sum of deviations: 8296391604247.574
[2025-11-27 22:54:09] 2025-11-28 03:53:32,110 | INFO     | mean x: 1764260978.4245353
[2025-11-27 22:54:09] 2025-11-28 03:53:32,110 | INFO     | mean y: 3481312.0304832715
[2025-11-27 22:54:09] 2025-11-28 03:53:32,110 | INFO     | intersect: -19396577048.996048
[2025-11-27 22:54:09] 2025-11-28 03:53:32,112 | INFO     | chi2: 19.727387550694747
[2025-11-27 22:54:09] 2025-11-28 03:53:32,114 | INFO     | sum of square deviations: 746101504827.9126
[2025-11-27 22:54:09] 2025-11-28 03:53:32,165 | INFO     | sum of deviations: 8874175397193.979
[2025-11-27 22:54:09] 2025-11-28 03:53:32,165 | INFO     | mean x: 1764260825.944776
[2025-11-27 22:54:09] 2025-11-28 03:53:32,165 | INFO     | mean y: 3491822.945522388
[2025-11-27 22:54:09] 2025-11-28 03:53:32,169 | INFO     | intersect: -20980730718.521378
[2025-11-27 22:54:09] 2025-11-28 03:53:32,171 | INFO     | chi2: 16.201209513113877
[2025-11-27 22:54:09] 2025-11-28 03:53:32,172 | INFO     | current chi2=16.201209513113877 (change=17.874531174081827 %)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,172 | INFO     | right removable region: 1339
[2025-11-27 22:54:09] 2025-11-28 03:53:32,178 | INFO     | sum of square deviations: 746097054267.9127
[2025-11-27 22:54:09] 2025-11-28 03:53:32,254 | INFO     | sum of deviations: 7615881392687.802
[2025-11-27 22:54:09] 2025-11-28 03:53:32,254 | INFO     | mean x: 1764261130.944776
[2025-11-27 22:54:09] 2025-11-28 03:53:32,254 | INFO     | mean y: 3493688.956716418
[2025-11-27 22:54:09] 2025-11-28 03:53:32,254 | INFO     | intersect: -18005428129.11528
[2025-11-27 22:54:09] 2025-11-28 03:53:32,256 | INFO     | chi2: 15.13149688638931
[2025-11-27 22:54:09] 2025-11-28 03:53:32,256 | INFO     | current chi2=15.13149688638931 (change=23.297006015089824 %)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,256 | INFO     | left removable region: 10
[2025-11-27 22:54:09] 2025-11-28 03:53:32,262 | INFO     | sum of square deviations: 727874076026.0933
[2025-11-27 22:54:09] 2025-11-28 03:53:32,328 | INFO     | sum of deviations: 7707768532521.291
[2025-11-27 22:54:09] 2025-11-28 03:53:32,328 | INFO     | mean x: 1764261100.4890895
[2025-11-27 22:54:09] 2025-11-28 03:53:32,328 | INFO     | mean y: 3517996.3303235513
[2025-11-27 22:54:09] 2025-11-28 03:53:32,329 | INFO     | intersect: -18678994049.90678
[2025-11-27 22:54:09] 2025-11-28 03:53:32,334 | INFO     | chi2: 7.117710042542361
[2025-11-27 22:54:09] 2025-11-28 03:53:32,335 | INFO     | current memory leak: 10.59 B/s (using 1329 data points, chi2=7.12)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,336 | INFO     | could have reported an average CPU frequency of 2603 MHz (48 samples)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,336 | INFO     | ..............................
[2025-11-27 22:54:09] 2025-11-28 03:53:32,336 | INFO     | . Timing measurements:
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . get job = 0 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . initial setup = 7 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . payload setup = 54 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . stage-in = 0 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . payload execution = 82019 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . stage-out = 8 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | . log creation = 2 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,337 | INFO     | ..............................
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | 
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | job summary report
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | --------------------------------------------------
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | PanDA job id: 6898120878
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | task id: 47556161
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | errors: (none)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:54:09] 2025-11-28 03:53:32,534 | INFO     | pilot state: finished 
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | transexitcode: 0
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | exeerrorcode: 0
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | exeerrordiag: 
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | exitcode: 0
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | exitmsg: OK
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | cpuconsumptiontime: 262874 s
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | nevents: 1000
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | neventsw: 0
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | pid: 417625
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | pgrp: 417625
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | corecount: 12
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | event service: False
[2025-11-27 22:54:09] 2025-11-28 03:53:32,535 | INFO     | sizes: {0: 2283436, 1: 2284037, 2: 2284121, 3: 2284348, 14: 2284348, 25: 2284376, 37: 2284794, 48: 2284822, 82079: 2347179, 82088: 2356173, 82089: 2356229, 82117: 
[2025-11-27 22:54:09] 2025-11-28 03:53:32,536 | INFO     | --------------------------------------------------
[2025-11-27 22:54:09] 2025-11-28 03:53:32,536 | INFO     | 
[2025-11-27 22:54:09] 2025-11-28 03:53:32,536 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 22:54:09] 2025-11-28 03:53:32,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:54:09] 2025-11-28 03:53:32,651 | INFO     | job 6898120878 has completed (purged errors)
[2025-11-27 22:54:09] 2025-11-28 03:53:32,651 | INFO     | overall cleanup function is called
[2025-11-27 22:54:09] 2025-11-28 03:53:33,737 | INFO     | --- collectZombieJob: --- 10, [417625]
[2025-11-27 22:54:09] 2025-11-28 03:53:33,738 | INFO     | zombie collector waiting for pid 417625
[2025-11-27 22:54:09] 2025-11-28 03:53:33,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:54:09] 2025-11-28 03:53:33,738 | INFO     | collected zombie processes
[2025-11-27 22:54:09] 2025-11-28 03:53:33,738 | INFO     | will attempt to kill all subprocesses of pid=417625
[2025-11-27 22:54:09] 2025-11-28 03:53:34,807 | INFO     | process IDs to be killed: [417625] (in reverse order)
[2025-11-27 22:54:09] 2025-11-28 03:53:35,096 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:54:09] 2025-11-28 03:53:35,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:54:09] 2025-11-28 03:53:35,139 | INFO     | did not find any defunct processes belonging to 417625
[2025-11-27 22:54:09] 2025-11-28 03:53:35,186 | INFO     | did not find any defunct processes belonging to 417625
[2025-11-27 22:54:09] 2025-11-28 03:53:35,200 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:54:09] 2025-11-28 03:53:35,200 | INFO     | ready for new job
[2025-11-27 22:54:09] 2025-11-28 03:53:35,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:54:09] 2025-11-28 03:53:35,206 | INFO     | ***************************************
[2025-11-27 22:54:09] 2025-11-28 03:53:35,213 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:54:09] 2025-11-28 03:53:35,213 | INFO     | ***************************************
[2025-11-27 22:54:09] 2025-11-28 03:53:35,213 | INFO     | 
[2025-11-27 22:54:09] 2025-11-28 03:53:35,226 | INFO     | architecture information:
[2025-11-27 22:54:09] 2025-11-28 03:53:35,236 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:54:09] 2025-11-28 03:53:35,282 | INFO     | cat /etc/os-release:
[2025-11-27 22:54:09] NAME="CentOS Linux"
[2025-11-27 22:54:09] VERSION="7 (Core)"
[2025-11-27 22:54:09] ID="centos"
[2025-11-27 22:54:09] ID_LIKE="rhel fedora"
[2025-11-27 22:54:09] VERSION_ID="7"
[2025-11-27 22:54:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:54:09] ANSI_COLOR="0;31"
[2025-11-27 22:54:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:54:09] HOME_URL="https://www.centos.org/"
[2025-11-27 22:54:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:54:09] 
[2025-11-27 22:54:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:54:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:54:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:54:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:54:09] 
[2025-11-27 22:54:09] 2025-11-28 03:53:35,282 | INFO     | ***************************************
[2025-11-27 22:54:09] 2025-11-28 03:53:35,786 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 22:54:09] 2025-11-28 03:53:35,862 | INFO     | sufficient remaining disk space (122180075520 B)
[2025-11-27 22:54:09] 2025-11-28 03:53:35,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:54:09] 2025-11-28 03:53:35,862 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:54:09] 2025-11-28 03:53:35,862 | INFO     | update_server=False
[2025-11-27 22:54:09] 2025-11-28 03:53:35,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:54:09] 2025-11-28 03:53:35,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:54:09] 2025-11-28 03:53:35,866 | INFO     | aborting loop
[2025-11-27 22:54:09] 2025-11-28 03:53:36,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:54:09] 2025-11-28 03:53:36,187 | INFO     | all payload control threads have been joined
[2025-11-27 22:54:09] 2025-11-28 03:53:36,374 | INFO     | all job control threads have been joined
[2025-11-27 22:54:09] 2025-11-28 03:53:36,624 | INFO     | all data control threads have been joined
[2025-11-27 22:54:09] 2025-11-28 03:53:36,868 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:36,871 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,018 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,193 | INFO     | [payload] control thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,253 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,380 | INFO     | [job] control thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,384 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:54:09] 2025-11-28 03:53:37,514 | INFO     | [job] validate thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:54:09] 2025-11-28 03:53:37,630 | INFO     | [data] control thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,819 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,953 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,954 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:37,959 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:38,067 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:38,569 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:53:41,396 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:54:09] 2025-11-28 03:54:02,291 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:54:09] 2025-11-28 03:54:03,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323239429952)>', '<ExcThread(monitor, started 140322621355776)>']
[2025-11-27 22:54:09] 2025-11-28 03:54:05,489 | INFO     | PID=390260 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 22:54:09] 2025-11-28 03:54:05,489 | INFO     | .. there are 25 such processes running
[2025-11-27 22:54:09] 2025-11-28 03:54:05,490 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:54:09] 2025-11-28 03:54:05,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:54:09] 2025-11-28 03:54:05,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:54:09] 2025-11-28 03:54:05,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:54:09] 2025-11-28 03:54:05,490 | INFO     | [monitor] control thread has ended
[2025-11-27 22:54:09] 2025-11-28 03:54:08,117 | INFO     | all workflow threads have been joined
[2025-11-27 22:54:09] 2025-11-28 03:54:08,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:54:09] 2025-11-28 03:54:08,118 | INFO     | traces error code: 0
[2025-11-27 22:54:09] 2025-11-28 03:54:08,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:54:09] 2025-11-28 03:54:08,725 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:54:09] 2025-11-28 03:54:08,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:54:09] 2025-11-28 03:54:08,731 [wrapper] pilotpid: 390260
[2025-11-27 22:54:09] 2025-11-28 03:54:08,733 [wrapper] Pilot exit status: 0
[2025-11-27 22:54:09] 2025-11-28 03:54:08,798 [wrapper] pandaids: 6898120878
[2025-11-27 22:54:09] 2025-11-28 03:54:08,997 [wrapper] cleanup supervisor_pilot  210964 390261
[2025-11-27 22:54:09] 2025-11-28 03:54:09,007 [wrapper] Test setup, not cleaning
[2025-11-27 22:54:09] 2025-11-28 03:54:09,023 [wrapper] apfmon messages muted
[2025-11-27 22:54:09] 2025-11-28 03:54:09,035 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:54:09] 2025-11-28 03:54:09,051 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:54:09]  *** Error codes and diagnostics ***
[2025-11-27 22:54:09]     "exeErrorCode": 0,
[2025-11-27 22:54:09]     "exeErrorDiag": "",
[2025-11-27 22:54:09]     "pilotErrorCode": 0,
[2025-11-27 22:54:09]     "pilotErrorDiag": "",
[2025-11-27 22:54:09]  *** Listing of results directory ***
[2025-11-27 22:54:09] total 1329984
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 22:54:09] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:54:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 22:54:09] -rw-r--r--. 2 boincer umatlas 408912877 Nov 27 00:02 EVNT.47483658._002450.pool.root.1
[2025-11-27 22:54:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 22:54:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 22:54:09] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:02 input.tar.gz
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 22:54:09] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:38 boinc_task_state.xml
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 22:49 init_data.xml
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas 923504826 Nov 27 22:51 HITS.47556161._004323.pool.root.1
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas      1061 Nov 27 22:52 memory_monitor_summary.json
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas   2820479 Nov 27 22:53 log.47556161._004323.job.log.tgz.1
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas      8630 Nov 27 22:53 heartbeat.json
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas        95 Nov 27 22:54 pilot_heartbeat.json
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:54 wrapper_checkpoint.txt
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:54 boinc_mmap_file
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas      4824 Nov 27 22:54 pilotlog.txt
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas   9961117 Nov 27 22:54 log.47556161._004323.job.log.1
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas       353 Nov 27 22:54 output.list
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:54 runtime_log
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas  12800000 Nov 27 22:54 result.tar.gz
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas       662 Nov 27 22:54 WAQODmniLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPsMKDmwCd9No.diag
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 22:54 runtime_log.err
[2025-11-27 22:54:09] -rw-r--r--. 1 boincer umatlas     21831 Nov 27 22:54 stderr.txt
[2025-11-27 22:54:09] HITS file was successfully produced:
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas 923504826 Nov 27 22:51 shared/HITS.pool.root.1
[2025-11-27 22:54:09]  *** Contents of shared directory: ***
[2025-11-27 22:54:09] total 1314300
[2025-11-27 22:54:09] -rw-r--r--. 2 boincer umatlas 408912877 Nov 27 00:02 ATLAS.root_0
[2025-11-27 22:54:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 22:54:09] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:02 input.tar.gz
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas 923504826 Nov 27 22:51 HITS.pool.root.1
[2025-11-27 22:54:09] -rw-------. 1 boincer umatlas  12800000 Nov 27 22:54 result.tar.gz
22:54:10 (378035): run_atlas exited; CPU time 264950.920192
22:54:10 (378035): called boinc_finish(0)

</stderr_txt>
]]>

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