Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:16 (2515339): wrapper (7.7.26015): starting
00:01:16 (2515339): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:16] Arguments: --nthreads 9
[2025-11-27 00:01:16] Threads: 9
[2025-11-27 00:01:16] Checking for CVMFS
[2025-11-27 00:01:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:17] 2.13.3.0 12359 31045 386620 153347 1 707 23624757 32935937 39725 16776704 0 192059043 99.615 188731975 32523 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:17] CVMFS is ok
[2025-11-27 00:01:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:17] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:17] Checking for apptainer binary...
[2025-11-27 00:01:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:17] Running /usr/bin/apptainer --version
[2025-11-27 00:01:18] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:18] c6-12-29-3.aglt2.org
[2025-11-27 00:01:18] apptainer works
[2025-11-27 00:01:18] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:18] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:18] Starting ATLAS job with PandaID=6898120872
[2025-11-27 00:01:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:51:33]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:51:33] 2025-11-27 23:50:39,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:51:33] 2025-11-27 23:50:40,416 | INFO     | time since job start (67714s) is within the limit (172800.0s)
[2025-11-27 18:51:33] 2025-11-27 23:50:41,552 | INFO     | monitor loop #3609: job 0:6898120872 is in state 'finished'
[2025-11-27 18:51:33] 2025-11-27 23:50:41,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:51:33] 2025-11-27 23:50:42,451 | INFO     | time since job start (67716s) is within the limit (172800.0s)
[2025-11-27 18:51:33] 2025-11-27 23:50:44,072 | INFO     | monitor loop #3610: job 0:6898120872 is in state 'finished'
[2025-11-27 18:51:33] 2025-11-27 23:50:44,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:51:33] 2025-11-27 23:50:44,496 | INFO     | time since job start (67718s) is within the limit (172800.0s)
[2025-11-27 18:51:33] 2025-11-27 23:50:46,506 | INFO     | time since job start (67720s) is within the limit (172800.0s)
[2025-11-27 18:51:33] 2025-11-27 23:50:46,577 | INFO     | monitor loop #3611: job 0:6898120872 is in state 'finished'
[2025-11-27 18:51:33] 2025-11-27 23:50:46,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:51:33] 2025-11-27 23:50:48,513 | INFO     | time since job start (67722s) is within the limit (172800.0s)
[2025-11-27 18:51:33] 2025-11-27 23:50:48,905 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:51:33] 2025-11-27 23:50:48,914 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2541.589947916667
[2025-11-27 18:51:33] 2025-11-27 23:50:48,958 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6898120872/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:51:33] 2025-11-27 23:50:48,959 | INFO     | extracted standard info from prmon json
[2025-11-27 18:51:33] 2025-11-27 23:50:48,959 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:51:33] 2025-11-27 23:50:48,959 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:51:33] 2025-11-27 23:50:49,005 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:51:33] 2025-11-27 23:50:49,007 | INFO     | sum of square deviations: 421753082075.2563
[2025-11-27 18:51:33] 2025-11-27 23:50:49,060 | INFO     | sum of deviations: 2108845200024.5159
[2025-11-27 18:51:33] 2025-11-27 23:50:49,061 | INFO     | mean x: 1764253582.7075813
[2025-11-27 18:51:33] 2025-11-27 23:50:49,066 | INFO     | mean y: 3015099.415162455
[2025-11-27 18:51:33] 2025-11-27 23:50:49,066 | INFO     | intersect: -8818586585.655766
[2025-11-27 18:51:33] 2025-11-27 23:50:49,068 | INFO     | chi2: 19.517360760001974
[2025-11-27 18:51:33] 2025-11-27 23:50:49,077 | INFO     | sum of square deviations: 416070738206.7123
[2025-11-27 18:51:33] 2025-11-27 23:50:49,107 | INFO     | monitor loop #3612: job 0:6898120872 is in state 'finished'
[2025-11-27 18:51:33] 2025-11-27 23:50:49,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:51:33] 2025-11-27 23:50:49,179 | INFO     | sum of deviations: 2532876611032.477
[2025-11-27 18:51:33] 2025-11-27 23:50:49,180 | INFO     | mean x: 1764253430.2357209
[2025-11-27 18:51:33] 2025-11-27 23:50:49,180 | INFO     | mean y: 3026474.3481414323
[2025-11-27 18:51:33] 2025-11-27 23:50:49,180 | INFO     | intersect: -10737061301.682308
[2025-11-27 18:51:33] 2025-11-27 23:50:49,181 | INFO     | chi2: 15.574297760297338
[2025-11-27 18:51:33] 2025-11-27 23:50:49,182 | INFO     | current chi2=15.574297760297338 (change=20.20284939234908 %)
[2025-11-27 18:51:33] 2025-11-27 23:50:49,192 | INFO     | right removable region: 1102
[2025-11-27 18:51:33] 2025-11-27 23:50:49,194 | INFO     | sum of square deviations: 416066542626.7119
[2025-11-27 18:51:33] 2025-11-27 23:50:49,318 | INFO     | sum of deviations: 1683103011608.9214
[2025-11-27 18:51:33] 2025-11-27 23:50:49,319 | INFO     | mean x: 1764253735.2357209
[2025-11-27 18:51:33] 2025-11-27 23:50:49,319 | INFO     | mean y: 3026514.4233907526
[2025-11-27 18:51:33] 2025-11-27 23:50:49,319 | INFO     | intersect: -7133862590.552412
[2025-11-27 18:51:33] 2025-11-27 23:50:49,321 | INFO     | chi2: 16.13714886112107
[2025-11-27 18:51:33] 2025-11-27 23:50:49,321 | INFO     | current chi2=16.13714886112107 (change=17.319000967631666 %)
[2025-11-27 18:51:33] 2025-11-27 23:50:49,321 | INFO     | left removable region: 10
[2025-11-27 18:51:33] 2025-11-27 23:50:49,344 | INFO     | sum of square deviations: 403741918165.8118
[2025-11-27 18:51:33] 2025-11-27 23:50:49,609 | INFO     | sum of deviations: 2006508837810.9817
[2025-11-27 18:51:33] 2025-11-27 23:50:49,609 | INFO     | mean x: 1764253704.7921245
[2025-11-27 18:51:33] 2025-11-27 23:50:49,609 | INFO     | mean y: 3044852.7884615385
[2025-11-27 18:51:33] 2025-11-27 23:50:49,609 | INFO     | intersect: -8764909356.396065
[2025-11-27 18:51:33] 2025-11-27 23:50:49,611 | INFO     | chi2: 10.987370339708933
[2025-11-27 18:51:33] 2025-11-27 23:50:49,611 | INFO     | current memory leak: 4.97 B/s (using 1092 data points, chi2=10.99)
[2025-11-27 18:51:33] 2025-11-27 23:50:49,666 | INFO     | could have reported an average CPU frequency of 2603 MHz (40 samples)
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | ..............................
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . Timing measurements:
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . get job = 0 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . initial setup = 3 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . payload setup = 26 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . stage-in = 0 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . payload execution = 67592 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . stage-out = 15 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | . log creation = 5 s
[2025-11-27 18:51:33] 2025-11-27 23:50:49,667 | INFO     | ..............................
[2025-11-27 18:51:33] 2025-11-27 23:50:50,567 | INFO     | 
[2025-11-27 18:51:33] 2025-11-27 23:50:50,567 | INFO     | job summary report
[2025-11-27 18:51:33] 2025-11-27 23:50:50,567 | INFO     | --------------------------------------------------
[2025-11-27 18:51:33] 2025-11-27 23:50:50,567 | INFO     | PanDA job id: 6898120872
[2025-11-27 18:51:33] 2025-11-27 23:50:50,567 | INFO     | task id: 47556161
[2025-11-27 18:51:33] 2025-11-27 23:50:50,567 | INFO     | errors: (none)
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | pilot state: finished 
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | transexitcode: 0
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | exeerrorcode: 0
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | exeerrordiag: 
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | exitcode: 0
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | exitmsg: OK
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | cpuconsumptiontime: 272993 s
[2025-11-27 18:51:33] 2025-11-27 23:50:50,568 | INFO     | nevents: 1000
[2025-11-27 18:51:33] 2025-11-27 23:50:50,569 | INFO     | neventsw: 0
[2025-11-27 18:51:33] 2025-11-27 23:50:50,569 | INFO     | pid: 2573755
[2025-11-27 18:51:33] 2025-11-27 23:50:50,588 | INFO     | pgrp: 2573755
[2025-11-27 18:51:33] 2025-11-27 23:50:50,588 | INFO     | corecount: 9
[2025-11-27 18:51:33] 2025-11-27 23:50:50,588 | INFO     | event service: False
[2025-11-27 18:51:33] 2025-11-27 23:50:50,589 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 3: 2284320, 14: 2284348, 18: 2284638, 25: 2284794, 67623: 2339875, 67624: 2339874, 67640: 2348924, 67642: 2348980, 6768
[2025-11-27 18:51:33] 2025-11-27 23:50:50,589 | INFO     | --------------------------------------------------
[2025-11-27 18:51:33] 2025-11-27 23:50:50,589 | INFO     | 
[2025-11-27 18:51:33] 2025-11-27 23:50:50,589 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 18:51:33] 2025-11-27 23:50:50,631 | INFO     | time since job start (67724s) is within the limit (172800.0s)
[2025-11-27 18:51:33] 2025-11-27 23:50:50,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:51:33] 2025-11-27 23:50:50,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:51:33] 2025-11-27 23:50:50,651 | INFO     | job 6898120872 has completed (purged errors)
[2025-11-27 18:51:33] 2025-11-27 23:50:50,651 | INFO     | overall cleanup function is called
[2025-11-27 18:51:33] 2025-11-27 23:50:51,686 | INFO     | --- collectZombieJob: --- 10, [2573755]
[2025-11-27 18:51:33] 2025-11-27 23:50:51,686 | INFO     | zombie collector waiting for pid 2573755
[2025-11-27 18:51:33] 2025-11-27 23:50:51,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:51:33] 2025-11-27 23:50:51,686 | INFO     | collected zombie processes
[2025-11-27 18:51:33] 2025-11-27 23:50:51,686 | INFO     | will attempt to kill all subprocesses of pid=2573755
[2025-11-27 18:51:33] 2025-11-27 23:50:56,626 | INFO     | process IDs to be killed: [2573755] (in reverse order)
[2025-11-27 18:51:33] 2025-11-27 23:50:57,525 | INFO     | PID=2530948 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:51:33] 2025-11-27 23:50:57,548 | INFO     | .. there are 58 such processes running
[2025-11-27 18:51:33] 2025-11-27 23:50:57,555 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:51:33] 2025-11-27 23:50:57,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:51:33] 2025-11-27 23:50:57,713 | INFO     | did not find any defunct processes belonging to 2573755
[2025-11-27 18:51:33] 2025-11-27 23:50:57,796 | INFO     | did not find any defunct processes belonging to 2573755
[2025-11-27 18:51:33] 2025-11-27 23:50:57,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:51:33] 2025-11-27 23:50:57,812 | INFO     | ready for new job
[2025-11-27 18:51:33] 2025-11-27 23:50:57,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:51:33] 2025-11-27 23:50:57,827 | INFO     | ***************************************
[2025-11-27 18:51:33] 2025-11-27 23:50:57,827 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:51:33] 2025-11-27 23:50:57,827 | INFO     | ***************************************
[2025-11-27 18:51:33] 2025-11-27 23:50:57,828 | INFO     | 
[2025-11-27 18:51:33] 2025-11-27 23:50:57,858 | INFO     | architecture information:
[2025-11-27 18:51:33] 2025-11-27 23:50:57,862 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:51:33] 2025-11-27 23:50:57,957 | INFO     | cat /etc/os-release:
[2025-11-27 18:51:33] NAME="CentOS Linux"
[2025-11-27 18:51:33] VERSION="7 (Core)"
[2025-11-27 18:51:33] ID="centos"
[2025-11-27 18:51:33] ID_LIKE="rhel fedora"
[2025-11-27 18:51:33] VERSION_ID="7"
[2025-11-27 18:51:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:51:33] ANSI_COLOR="0;31"
[2025-11-27 18:51:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:51:33] HOME_URL="https://www.centos.org/"
[2025-11-27 18:51:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:51:33] 
[2025-11-27 18:51:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:51:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:51:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:51:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:51:33] 
[2025-11-27 18:51:33] 2025-11-27 23:50:57,957 | INFO     | ***************************************
[2025-11-27 18:51:33] 2025-11-27 23:50:58,461 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 18:51:33] 2025-11-27 23:50:58,569 | INFO     | sufficient remaining disk space (89880788992 B)
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | INFO     | update_server=False
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | INFO     | aborting loop
[2025-11-27 18:51:33] 2025-11-27 23:50:58,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:51:33] 2025-11-27 23:50:58,613 | INFO     | all data control threads have been joined
[2025-11-27 18:51:33] 2025-11-27 23:50:58,805 | INFO     | all payload control threads have been joined
[2025-11-27 18:51:33] 2025-11-27 23:50:59,007 | INFO     | all job control threads have been joined
[2025-11-27 18:51:33] 2025-11-27 23:50:59,578 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,579 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,619 | INFO     | [data] control thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:51:33] 2025-11-27 23:50:59,697 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,721 | INFO     | [job] validate thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,750 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:50:59,811 | INFO     | [payload] control thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:00,013 | INFO     | [job] control thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:00,580 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:00,667 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:00,877 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:00,877 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:00,995 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:01,160 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:01,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:51:33] 2025-11-27 23:51:05,769 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:51:33] 2025-11-27 23:51:10,945 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:51:33] 2025-11-27 23:51:11,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348659787584)>', '<ExcThread(monitor, started 140348164654848)>']
[2025-11-27 18:51:33] 2025-11-27 23:51:16,294 | INFO     | all workflow threads have been joined
[2025-11-27 18:51:33] 2025-11-27 23:51:16,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:51:33] 2025-11-27 23:51:16,294 | INFO     | traces error code: 0
[2025-11-27 18:51:33] 2025-11-27 23:51:16,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:51:33] 2025-11-27 23:51:31,504 | INFO     | PID=2530948 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:51:33] 2025-11-27 23:51:31,504 | INFO     | .. there are 58 such processes running
[2025-11-27 18:51:33] 2025-11-27 23:51:31,506 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:51:33] 2025-11-27 23:51:31,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:51:33] 2025-11-27 23:51:31,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:51:33] 2025-11-27 23:51:31,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:51:33] 2025-11-27 23:51:31,506 | INFO     | [monitor] control thread has ended
[2025-11-27 18:51:33] 2025-11-27 23:51:32,160 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:51:33] 2025-11-27 23:51:32,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:51:33] 2025-11-27 23:51:32,207 [wrapper] pilotpid: 2530948
[2025-11-27 18:51:33] 2025-11-27 23:51:32,227 [wrapper] Pilot exit status: 0
[2025-11-27 18:51:33] 2025-11-27 23:51:32,312 [wrapper] pandaids: 6898120872
[2025-11-27 18:51:33] 2025-11-27 23:51:33,045 [wrapper] cleanup supervisor_pilot 3615285 2530949
[2025-11-27 18:51:33] 2025-11-27 23:51:33,069 [wrapper] Test setup, not cleaning
[2025-11-27 18:51:33] 2025-11-27 23:51:33,092 [wrapper] apfmon messages muted
[2025-11-27 18:51:33] 2025-11-27 23:51:33,140 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:51:33] 2025-11-27 23:51:33,201 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:51:33]  *** Error codes and diagnostics ***
[2025-11-27 18:51:33]     "exeErrorCode": 0,
[2025-11-27 18:51:33]     "exeErrorDiag": "",
[2025-11-27 18:51:33]     "pilotErrorCode": 0,
[2025-11-27 18:51:33]     "pilotErrorDiag": "",
[2025-11-27 18:51:33]  *** Listing of results directory ***
[2025-11-27 18:51:33] total 1326180
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 18:51:33] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:51:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 18:51:33] -rw-r--r--. 2 boincer umatlas 407843680 Nov 27 00:01 EVNT.47483658._002449.pool.root.1
[2025-11-27 18:51:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 18:51:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 18:51:33] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:01 input.tar.gz
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 18:51:33] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:20 boinc_task_state.xml
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas 925707338 Nov 27 18:46 HITS.47556161._004317.pool.root.1
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 18:47 init_data.xml
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas      1059 Nov 27 18:49 memory_monitor_summary.json
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas   2297153 Nov 27 18:50 log.47556161._004317.job.log.tgz.1
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas      8628 Nov 27 18:50 heartbeat.json
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas        95 Nov 27 18:51 pilot_heartbeat.json
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas       823 Nov 27 18:51 pilotlog.txt
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:51 boinc_mmap_file
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:51 wrapper_checkpoint.txt
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas   7970595 Nov 27 18:51 log.47556161._004317.job.log.1
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas       353 Nov 27 18:51 output.list
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:51 runtime_log
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas  10291200 Nov 27 18:51 result.tar.gz
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 18:51 runtime_log.err
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas       662 Nov 27 18:51 lx9NDmniLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKsMKDm0jNOYn.diag
[2025-11-27 18:51:33] -rw-r--r--. 1 boincer umatlas     21905 Nov 27 18:51 stderr.txt
[2025-11-27 18:51:33] HITS file was successfully produced:
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas 925707338 Nov 27 18:46 shared/HITS.pool.root.1
[2025-11-27 18:51:33]  *** Contents of shared directory: ***
[2025-11-27 18:51:33] total 1312956
[2025-11-27 18:51:33] -rw-r--r--. 2 boincer umatlas 407843680 Nov 27 00:01 ATLAS.root_0
[2025-11-27 18:51:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 18:51:33] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:01 input.tar.gz
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas 925707338 Nov 27 18:46 HITS.pool.root.1
[2025-11-27 18:51:33] -rw-------. 1 boincer umatlas  10291200 Nov 27 18:51 result.tar.gz
18:51:34 (2515339): run_atlas exited; CPU time 276037.796148
18:51:34 (2515339): called boinc_finish(0)

</stderr_txt>
]]>

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