Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:33 (571349): wrapper (7.7.26015): starting
00:03:33 (571349): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:03:33] Arguments: --nthreads 9
[2025-11-27 00:03:33] Threads: 9
[2025-11-27 00:03:33] Checking for CVMFS
[2025-11-27 00:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:34] 2.13.3.0 12763 30999 230292 153347 2 619 37536630 40960001 57845 16776704 0 275090513 99.746 169322736 35883 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:03:34] CVMFS is ok
[2025-11-27 00:03:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:34] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:34] Checking for apptainer binary...
[2025-11-27 00:03:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:34] Running /usr/bin/apptainer --version
[2025-11-27 00:03:34] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:34] c7-2-17.aglt2.org
[2025-11-27 00:03:34] apptainer works
[2025-11-27 00:03:34] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:03:34] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:03:34] Starting ATLAS job with PandaID=6897394499
[2025-11-27 00:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:10:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:10:10] 2025-11-27 20:09:07,831 | INFO     | intersect: -25166677170.9042
[2025-11-27 15:10:10] 2025-11-27 20:09:07,832 | INFO     | chi2: 12.988948730059906
[2025-11-27 15:10:10] 2025-11-27 20:09:07,833 | INFO     | sum of square deviations: 214932208788.44742
[2025-11-27 15:10:10] 2025-11-27 20:09:07,851 | INFO     | sum of deviations: 3473213444999.7275
[2025-11-27 15:10:10] 2025-11-27 20:09:07,851 | INFO     | mean x: 1764246838.098305
[2025-11-27 15:10:10] 2025-11-27 20:09:07,851 | INFO     | mean y: 3163006.4169491525
[2025-11-27 15:10:10] 2025-11-27 20:09:07,851 | INFO     | intersect: -28506318531.608578
[2025-11-27 15:10:10] 2025-11-27 20:09:07,852 | INFO     | chi2: 9.035249618431664
[2025-11-27 15:10:10] 2025-11-27 20:09:07,852 | INFO     | current chi2=9.035249618431664 (change=30.43894616720077 %)
[2025-11-27 15:10:10] 2025-11-27 20:09:07,853 | INFO     | sum of square deviations: 211310074532.38162
[2025-11-27 15:10:10] 2025-11-27 20:09:07,874 | INFO     | sum of deviations: 3840313347247.2
[2025-11-27 15:10:10] 2025-11-27 20:09:07,874 | INFO     | mean x: 1764246685.6045454
[2025-11-27 15:10:10] 2025-11-27 20:09:07,874 | INFO     | mean y: 3178460.6988636362
[2025-11-27 15:10:10] 2025-11-27 20:09:07,874 | INFO     | intersect: -32059940676.223846
[2025-11-27 15:10:10] 2025-11-27 20:09:07,875 | INFO     | chi2: 5.0229953999631745
[2025-11-27 15:10:10] 2025-11-27 20:09:07,875 | INFO     | current chi2=5.0229953999631745 (change=44.40667815401137 %)
[2025-11-27 15:10:10] 2025-11-27 20:09:07,876 | INFO     | sum of square deviations: 207728871276.24686
[2025-11-27 15:10:10] 2025-11-27 20:09:07,902 | INFO     | sum of deviations: 4022764747334.192
[2025-11-27 15:10:10] 2025-11-27 20:09:07,902 | INFO     | mean x: 1764246533.1108572
[2025-11-27 15:10:10] 2025-11-27 20:09:07,903 | INFO     | mean y: 3186218.3485714286
[2025-11-27 15:10:10] 2025-11-27 20:09:07,903 | INFO     | intersect: -34162256049.745327
[2025-11-27 15:10:10] 2025-11-27 20:09:07,918 | INFO     | chi2: 3.5033039200208402
[2025-11-27 15:10:10] 2025-11-27 20:09:07,918 | INFO     | current chi2=3.5033039200208402 (change=30.254685878340158 %)
[2025-11-27 15:10:10] 2025-11-27 20:09:07,919 | INFO     | sum of square deviations: 204188206702.23468
[2025-11-27 15:10:10] 2025-11-27 20:09:07,970 | INFO     | monitor loop #3365: job 0:6897394499 is in state 'finished'
[2025-11-27 15:10:10] 2025-11-27 20:09:07,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:10:10] 2025-11-27 20:09:08,200 | INFO     | sum of deviations: 4032571185262.079
[2025-11-27 15:10:10] 2025-11-27 20:09:08,200 | INFO     | mean x: 1764246380.6137931
[2025-11-27 15:10:10] 2025-11-27 20:09:08,201 | INFO     | mean y: 3186634.777011494
[2025-11-27 15:10:10] 2025-11-27 20:09:08,201 | INFO     | intersect: -34839418788.2728
[2025-11-27 15:10:10] 2025-11-27 20:09:08,201 | INFO     | chi2: 3.334925550260989
[2025-11-27 15:10:10] 2025-11-27 20:09:08,202 | INFO     | current chi2=3.334925550260989 (change=4.806273552163002 %)
[2025-11-27 15:10:10] 2025-11-27 20:09:08,202 | INFO     | right removable region: 869
[2025-11-27 15:10:10] 2025-11-27 20:09:08,202 | INFO     | sum of square deviations: 214931669915.6427
[2025-11-27 15:10:10] 2025-11-27 20:09:08,349 | INFO     | sum of deviations: 2807846939390.066
[2025-11-27 15:10:10] 2025-11-27 20:09:08,349 | INFO     | mean x: 1764247143.0971751
[2025-11-27 15:10:10] 2025-11-27 20:09:08,349 | INFO     | mean y: 3161171.2666666666
[2025-11-27 15:10:10] 2025-11-27 20:09:08,349 | INFO     | intersect: -23044796084.252422
[2025-11-27 15:10:10] 2025-11-27 20:09:08,350 | INFO     | chi2: 10.288433147757567
[2025-11-27 15:10:10] 2025-11-27 20:09:08,350 | INFO     | current chi2=10.288433147757567 (change=20.790871058353034 %)
[2025-11-27 15:10:10] 2025-11-27 20:09:08,350 | INFO     | left removable region: 10
[2025-11-27 15:10:10] 2025-11-27 20:09:08,351 | INFO     | sum of square deviations: 196540288478.64987
[2025-11-27 15:10:10] 2025-11-27 20:09:08,377 | INFO     | sum of deviations: 3604629033350.535
[2025-11-27 15:10:10] 2025-11-27 20:09:08,377 | INFO     | mean x: 1764246655.119907
[2025-11-27 15:10:10] 2025-11-27 20:09:08,377 | INFO     | mean y: 3204806.1792782303
[2025-11-27 15:10:10] 2025-11-27 20:09:08,377 | INFO     | intersect: -32353798250.359997
[2025-11-27 15:10:10] 2025-11-27 20:09:08,378 | INFO     | chi2: 0.4444388288786579
[2025-11-27 15:10:10] 2025-11-27 20:09:08,378 | INFO     | current memory leak: 18.34 B/s (using 859 data points, chi2=0.44)
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | could have reported an average CPU frequency of 3355 MHz (33 samples)
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | ..............................
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . Timing measurements:
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . get job = 0 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . initial setup = 2 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . payload setup = 12 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . stage-in = 0 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . payload execution = 54254 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,379 | INFO     | . stage-out = 5 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,380 | INFO     | . log creation = 1 s
[2025-11-27 15:10:10] 2025-11-27 20:09:08,380 | INFO     | ..............................
[2025-11-27 15:10:10] 2025-11-27 20:09:09,109 | INFO     | 
[2025-11-27 15:10:10] 2025-11-27 20:09:09,109 | INFO     | job summary report
[2025-11-27 15:10:10] 2025-11-27 20:09:09,109 | INFO     | --------------------------------------------------
[2025-11-27 15:10:10] 2025-11-27 20:09:09,109 | INFO     | PanDA job id: 6897394499
[2025-11-27 15:10:10] 2025-11-27 20:09:09,109 | INFO     | task id: 47556173
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | errors: (none)
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | pilot state: finished 
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | transexitcode: 0
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | exeerrorcode: 0
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | exeerrordiag: 
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | exitcode: 0
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | exitmsg: OK
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | cpuconsumptiontime: 192850 s
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | nevents: 1000
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | neventsw: 0
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | pid: 594016
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | pgrp: 594016
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | corecount: 9
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | event service: False
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | sizes: {0: 2284263, 1: 2284263, 8: 2284553, 11: 2284581, 54272: 2335338, 54278: 2344332, 54281: 2344516, 54295: 2344826}
[2025-11-27 15:10:10] 2025-11-27 20:09:09,110 | INFO     | --------------------------------------------------
[2025-11-27 15:10:10] 2025-11-27 20:09:09,111 | INFO     | 
[2025-11-27 15:10:10] 2025-11-27 20:09:09,111 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 15:10:10] 2025-11-27 20:09:09,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | job 6897394499 has completed (purged errors)
[2025-11-27 15:10:10] 2025-11-27 20:09:09,179 | INFO     | overall cleanup function is called
[2025-11-27 15:10:10] 2025-11-27 20:09:09,995 | INFO     | PID=576195 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:10:10] 2025-11-27 20:09:09,995 | INFO     | .. there are 86 such processes running
[2025-11-27 15:10:10] 2025-11-27 20:09:10,224 | INFO     | --- collectZombieJob: --- 10, [594016]
[2025-11-27 15:10:10] 2025-11-27 20:09:10,224 | INFO     | zombie collector waiting for pid 594016
[2025-11-27 15:10:10] 2025-11-27 20:09:10,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:10:10] 2025-11-27 20:09:10,225 | INFO     | collected zombie processes
[2025-11-27 15:10:10] 2025-11-27 20:09:10,225 | INFO     | will attempt to kill all subprocesses of pid=594016
[2025-11-27 15:10:10] 2025-11-27 20:09:11,639 | INFO     | process IDs to be killed: [594016] (in reverse order)
[2025-11-27 15:10:10] 2025-11-27 20:09:11,983 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:10:10] 2025-11-27 20:09:11,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:10:10] 2025-11-27 20:09:12,015 | INFO     | did not find any defunct processes belonging to 594016
[2025-11-27 15:10:10] 2025-11-27 20:09:12,046 | INFO     | did not find any defunct processes belonging to 594016
[2025-11-27 15:10:10] 2025-11-27 20:09:12,047 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:10:10] 2025-11-27 20:09:12,048 | INFO     | ready for new job
[2025-11-27 15:10:10] 2025-11-27 20:09:12,048 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:10:10] 2025-11-27 20:09:12,051 | INFO     | ***************************************
[2025-11-27 15:10:10] 2025-11-27 20:09:12,051 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:10:10] 2025-11-27 20:09:12,051 | INFO     | ***************************************
[2025-11-27 15:10:10] 2025-11-27 20:09:12,052 | INFO     | 
[2025-11-27 15:10:10] 2025-11-27 20:09:12,056 | INFO     | architecture information:
[2025-11-27 15:10:10] 2025-11-27 20:09:12,060 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:10:10] 2025-11-27 20:09:12,108 | INFO     | cat /etc/os-release:
[2025-11-27 15:10:10] NAME="CentOS Linux"
[2025-11-27 15:10:10] VERSION="7 (Core)"
[2025-11-27 15:10:10] ID="centos"
[2025-11-27 15:10:10] ID_LIKE="rhel fedora"
[2025-11-27 15:10:10] VERSION_ID="7"
[2025-11-27 15:10:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:10:10] ANSI_COLOR="0;31"
[2025-11-27 15:10:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:10:10] HOME_URL="https://www.centos.org/"
[2025-11-27 15:10:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:10:10] 
[2025-11-27 15:10:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:10:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:10:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:10:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:10:10] 
[2025-11-27 15:10:10] 2025-11-27 20:09:12,109 | INFO     | ***************************************
[2025-11-27 15:10:10] 2025-11-27 20:09:12,612 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 15:10:10] 2025-11-27 20:09:12,857 | INFO     | sufficient remaining disk space (120229724160 B)
[2025-11-27 15:10:10] 2025-11-27 20:09:12,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:10:10] 2025-11-27 20:09:12,858 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:10:10] 2025-11-27 20:09:12,858 | INFO     | update_server=False
[2025-11-27 15:10:10] 2025-11-27 20:09:12,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:10:10] 2025-11-27 20:09:12,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:10:10] 2025-11-27 20:09:13,011 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 15:10:10] 2025-11-27 20:09:13,011 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 15:10:10] 2025-11-27 20:09:13,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:10:10] 2025-11-27 20:09:13,012 | INFO     | will abort loop
[2025-11-27 15:10:10] 2025-11-27 20:09:13,014 | INFO     | all data control threads have been joined
[2025-11-27 15:10:10] 2025-11-27 20:09:13,019 | INFO     | all job control threads have been joined
[2025-11-27 15:10:10] 2025-11-27 20:09:13,094 | INFO     | all payload control threads have been joined
[2025-11-27 15:10:10] 2025-11-27 20:09:13,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:10:10] 2025-11-27 20:09:13,880 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,018 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,020 | INFO     | [data] control thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,024 | INFO     | [job] control thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,100 | INFO     | [payload] control thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,165 | INFO     | [job] validate thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,191 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,415 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,444 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,565 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,690 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,708 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:10:10] 2025-11-27 20:09:14,880 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:14,966 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:18,852 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:10:10] 2025-11-27 20:09:28,053 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:10:10] 2025-11-27 20:09:28,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140595108812608)>', '<ExcThread(monitor, started 140594462578432)>']
[2025-11-27 15:10:10] 2025-11-27 20:09:33,558 | INFO     | all workflow threads have been joined
[2025-11-27 15:10:10] 2025-11-27 20:09:33,558 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:10:10] 2025-11-27 20:09:33,559 | INFO     | traces error code: 0
[2025-11-27 15:10:10] 2025-11-27 20:09:33,559 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:10:10] 2025-11-27 20:09:43,092 | INFO     | PID=576195 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:10:10] 2025-11-27 20:09:43,092 | INFO     | .. there are 86 such processes running
[2025-11-27 15:10:10] 2025-11-27 20:09:43,093 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:10:10] 2025-11-27 20:09:43,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:10:10] 2025-11-27 20:09:43,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:10:10] 2025-11-27 20:09:43,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:10:10] 2025-11-27 20:09:43,093 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 15:10:10] 2025-11-27 20:09:43,093 | INFO     | [monitor] control thread has ended
[2025-11-27 15:10:10] 2025-11-27 20:09:43,272 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:10:10] 2025-11-27 20:09:43,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:10:10] 2025-11-27 20:09:43,281 [wrapper] pilotpid: 576195
[2025-11-27 15:10:10] 2025-11-27 20:09:43,290 [wrapper] Pilot exit status: 0
[2025-11-27 15:10:10] 2025-11-27 20:09:43,308 [wrapper] pandaids: 6897394499
[2025-11-27 15:10:10] 2025-11-27 20:09:43,473 [wrapper] cleanup supervisor_pilot 2373080 576196
[2025-11-27 15:10:10] 2025-11-27 20:09:43,476 [wrapper] Test setup, not cleaning
[2025-11-27 15:10:10] 2025-11-27 20:09:43,481 [wrapper] apfmon messages muted
[2025-11-27 15:10:10] 2025-11-27 20:09:43,485 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:10:10] 2025-11-27 20:09:43,514 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:10:10]  *** Error codes and diagnostics ***
[2025-11-27 15:10:10]     "exeErrorCode": 0,
[2025-11-27 15:10:10]     "exeErrorDiag": "",
[2025-11-27 15:10:10]     "pilotErrorCode": 0,
[2025-11-27 15:10:10]     "pilotErrorDiag": "",
[2025-11-27 15:10:10]  *** Listing of results directory ***
[2025-11-27 15:10:10] total 1317376
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 15:10:10] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:10:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 15:10:10] -rw-r--r--. 2 boincer umatlas 410807023 Nov 27 00:03 EVNT.47483658._003097.pool.root.1
[2025-11-27 15:10:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 15:10:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 15:10:10] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:03 input.tar.gz
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:03 pandaJob.out
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 15:10:10] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:47 boinc_task_state.xml
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas      6945 Nov 27 15:03 init_data.xml
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas 915961869 Nov 27 15:07 HITS.47556173._000794.pool.root.1
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas      1074 Nov 27 15:08 memory_monitor_summary.json
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas   2174768 Nov 27 15:08 log.47556173._000794.job.log.tgz.1
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas      8629 Nov 27 15:09 heartbeat.json
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas        95 Nov 27 15:09 pilot_heartbeat.json
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas       892 Nov 27 15:09 pilotlog.txt
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas   6976258 Nov 27 15:09 log.47556173._000794.job.log.1
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas       353 Nov 27 15:09 output.list
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:09 runtime_log
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas   9175040 Nov 27 15:09 result.tar.gz
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 15:09 runtime_log.err
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas       665 Nov 27 15:09 iXqMDmOXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWcJKDmBkUt5m.diag
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:10 wrapper_checkpoint.txt
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:10 boinc_mmap_file
[2025-11-27 15:10:10] -rw-r--r--. 1 boincer umatlas     21364 Nov 27 15:10 stderr.txt
[2025-11-27 15:10:10] HITS file was successfully produced:
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas 915961869 Nov 27 15:07 shared/HITS.pool.root.1
[2025-11-27 15:10:10]  *** Contents of shared directory: ***
[2025-11-27 15:10:10] total 1305240
[2025-11-27 15:10:10] -rw-r--r--. 2 boincer umatlas 410807023 Nov 27 00:03 ATLAS.root_0
[2025-11-27 15:10:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 15:10:10] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:03 input.tar.gz
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas 915961869 Nov 27 15:07 HITS.pool.root.1
[2025-11-27 15:10:10] -rw-------. 1 boincer umatlas   9175040 Nov 27 15:09 result.tar.gz
15:10:11 (571349): run_atlas exited; CPU time 194008.650310
15:10:11 (571349): called boinc_finish(0)

</stderr_txt>
]]>

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