Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:17 (3079531): wrapper (7.7.26015): starting
00:02:17 (3079531): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:02:17] Arguments: --nthreads 12
[2025-11-27 00:02:17] Threads: 12
[2025-11-27 00:02:17] Checking for CVMFS
[2025-11-27 00:02:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:19] 2.13.3.0 12348 31045 387128 153347 3 382 19918149 32935937 38584 16776704 0 157593899 99.496 198503046 35215 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:19] CVMFS is ok
[2025-11-27 00:02:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:20] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:20] Checking for apptainer binary...
[2025-11-27 00:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:20] Running /usr/bin/apptainer --version
[2025-11-27 00:02:20] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:21] c6-12-27-2.aglt2.org
[2025-11-27 00:02:21] apptainer works
[2025-11-27 00:02:21] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:02:21] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:02:21] Starting ATLAS job with PandaID=6898178653
[2025-11-27 00:02:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:41:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:41:24] 2025-11-27 21:40:10,153 | INFO     | monitor loop #3055: job 0:6898178653 is in state 'finished'
[2025-11-27 16:41:24] 2025-11-27 21:40:10,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:41:24] 2025-11-27 21:40:11,681 | INFO     | time since job start (59805s) is within the limit (172800.0s)
[2025-11-27 16:41:24] 2025-11-27 21:40:12,662 | INFO     | monitor loop #3056: job 0:6898178653 is in state 'finished'
[2025-11-27 16:41:24] 2025-11-27 21:40:12,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:41:24] 2025-11-27 21:40:13,712 | INFO     | time since job start (59807s) is within the limit (172800.0s)
[2025-11-27 16:41:24] 2025-11-27 21:40:15,170 | INFO     | monitor loop #3057: job 0:6898178653 is in state 'finished'
[2025-11-27 16:41:24] 2025-11-27 21:40:15,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:41:24] 2025-11-27 21:40:15,722 | INFO     | time since job start (59809s) is within the limit (172800.0s)
[2025-11-27 16:41:24] 2025-11-27 21:40:17,675 | INFO     | monitor loop #3058: job 0:6898178653 is in state 'finished'
[2025-11-27 16:41:24] 2025-11-27 21:40:17,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:41:24] 2025-11-27 21:40:17,730 | INFO     | time since job start (59811s) is within the limit (172800.0s)
[2025-11-27 16:41:24] 2025-11-27 21:40:19,735 | INFO     | time since job start (59813s) is within the limit (172800.0s)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,199 | INFO     | monitor loop #3059: job 0:6898178653 is in state 'finished'
[2025-11-27 16:41:24] 2025-11-27 21:40:20,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,570 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:41:24] 2025-11-27 21:40:20,593 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2697.868708333334
[2025-11-27 16:41:24] 2025-11-27 21:40:20,614 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898178653/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,615 | INFO     | extracted standard info from prmon json
[2025-11-27 16:41:24] 2025-11-27 21:40:20,615 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:41:24] 2025-11-27 21:40:20,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:41:24] 2025-11-27 21:40:20,630 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:41:24] 2025-11-27 21:40:20,632 | INFO     | sum of square deviations: 290017007325.0235
[2025-11-27 16:41:24] 2025-11-27 21:40:20,667 | INFO     | sum of deviations: 1906501346110.1687
[2025-11-27 16:41:24] 2025-11-27 21:40:20,667 | INFO     | mean x: 1764249749.5388548
[2025-11-27 16:41:24] 2025-11-27 21:40:20,667 | INFO     | mean y: 3449438.1533742333
[2025-11-27 16:41:24] 2025-11-27 21:40:20,667 | INFO     | intersect: -11594299788.328415
[2025-11-27 16:41:24] 2025-11-27 21:40:20,669 | INFO     | chi2: 20.50662986657842
[2025-11-27 16:41:24] 2025-11-27 21:40:20,674 | INFO     | sum of square deviations: 285592669669.2473
[2025-11-27 16:41:24] 2025-11-27 21:40:20,720 | INFO     | sum of deviations: 2309928476401.4707
[2025-11-27 16:41:24] 2025-11-27 21:40:20,720 | INFO     | mean x: 1764249597.069887
[2025-11-27 16:41:24] 2025-11-27 21:40:20,720 | INFO     | mean y: 3463338.5519013363
[2025-11-27 16:41:24] 2025-11-27 21:40:20,720 | INFO     | intersect: -14266126943.549028
[2025-11-27 16:41:24] 2025-11-27 21:40:20,722 | INFO     | chi2: 16.911675493617004
[2025-11-27 16:41:24] 2025-11-27 21:40:20,722 | INFO     | current chi2=16.911675493617004 (change=17.530693226293863 %)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,722 | INFO     | right removable region: 972
[2025-11-27 16:41:24] 2025-11-27 21:40:20,723 | INFO     | sum of square deviations: 285589067009.24756
[2025-11-27 16:41:24] 2025-11-27 21:40:20,744 | INFO     | sum of deviations: 1456951867484.5107
[2025-11-27 16:41:24] 2025-11-27 21:40:20,744 | INFO     | mean x: 1764249902.069887
[2025-11-27 16:41:24] 2025-11-27 21:40:20,744 | INFO     | mean y: 3464920.389516958
[2025-11-27 16:41:24] 2025-11-27 21:40:20,745 | INFO     | intersect: -8996974824.899664
[2025-11-27 16:41:24] 2025-11-27 21:40:20,746 | INFO     | chi2: 16.86384781391091
[2025-11-27 16:41:24] 2025-11-27 21:40:20,746 | INFO     | current chi2=16.86384781391091 (change=17.763923552375115 %)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,746 | INFO     | left removable region: 10
[2025-11-27 16:41:24] 2025-11-27 21:40:20,748 | INFO     | sum of square deviations: 276011426870.2577
[2025-11-27 16:41:24] 2025-11-27 21:40:20,788 | INFO     | sum of deviations: 1724981516777.4849
[2025-11-27 16:41:24] 2025-11-27 21:40:20,789 | INFO     | mean x: 1764249871.6299376
[2025-11-27 16:41:24] 2025-11-27 21:40:20,789 | INFO     | mean y: 3489276.74012474
[2025-11-27 16:41:24] 2025-11-27 21:40:20,789 | INFO     | intersect: -11022497777.662624
[2025-11-27 16:41:24] 2025-11-27 21:40:20,790 | INFO     | chi2: 11.685906544852957
[2025-11-27 16:41:24] 2025-11-27 21:40:20,790 | INFO     | current memory leak: 6.25 B/s (using 962 data points, chi2=11.69)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,796 | INFO     | could have reported an average CPU frequency of 2645 MHz (36 samples)
[2025-11-27 16:41:24] 2025-11-27 21:40:20,796 | INFO     | ..............................
[2025-11-27 16:41:24] 2025-11-27 21:40:20,796 | INFO     | . Timing measurements:
[2025-11-27 16:41:24] 2025-11-27 21:40:20,796 | INFO     | . get job = 0 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,796 | INFO     | . initial setup = 7 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,797 | INFO     | . payload setup = 45 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,797 | INFO     | . stage-in = 0 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,797 | INFO     | . payload execution = 59664 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,797 | INFO     | . stage-out = 8 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,797 | INFO     | . log creation = 1 s
[2025-11-27 16:41:24] 2025-11-27 21:40:20,797 | INFO     | ..............................
[2025-11-27 16:41:24] 2025-11-27 21:40:21,437 | INFO     | 
[2025-11-27 16:41:24] 2025-11-27 21:40:21,437 | INFO     | job summary report
[2025-11-27 16:41:24] 2025-11-27 21:40:21,437 | INFO     | --------------------------------------------------
[2025-11-27 16:41:24] 2025-11-27 21:40:21,437 | INFO     | PanDA job id: 6898178653
[2025-11-27 16:41:24] 2025-11-27 21:40:21,437 | INFO     | task id: 47556161
[2025-11-27 16:41:24] 2025-11-27 21:40:21,437 | INFO     | errors: (none)
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | pilot state: finished 
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | transexitcode: 0
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | exeerrorcode: 0
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | exeerrordiag: 
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | exitcode: 0
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | exitmsg: OK
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | cpuconsumptiontime: 270334 s
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | nevents: 1000
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | neventsw: 0
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | pid: 3124072
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | pgrp: 3124072
[2025-11-27 16:41:24] 2025-11-27 21:40:21,438 | INFO     | corecount: 12
[2025-11-27 16:41:24] 2025-11-27 21:40:21,439 | INFO     | event service: False
[2025-11-27 16:41:24] 2025-11-27 21:40:21,439 | INFO     | sizes: {0: 2283435, 1: 2284120, 2: 2284319, 14: 2284319, 25: 2284347, 30: 2284637, 36: 2284793, 59713: 2336404, 59714: 2336403, 59723: 2345453, 59724: 2345509, 597
[2025-11-27 16:41:24] 2025-11-27 21:40:21,439 | INFO     | --------------------------------------------------
[2025-11-27 16:41:24] 2025-11-27 21:40:21,439 | INFO     | 
[2025-11-27 16:41:24] 2025-11-27 21:40:21,439 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 16:41:24] 2025-11-27 21:40:21,523 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,524 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,524 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,528 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,528 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,528 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,529 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:41:24] 2025-11-27 21:40:21,530 | INFO     | job 6898178653 has completed (purged errors)
[2025-11-27 16:41:24] 2025-11-27 21:40:21,530 | INFO     | overall cleanup function is called
[2025-11-27 16:41:24] 2025-11-27 21:40:22,582 | INFO     | --- collectZombieJob: --- 10, [3124072]
[2025-11-27 16:41:24] 2025-11-27 21:40:22,582 | INFO     | zombie collector waiting for pid 3124072
[2025-11-27 16:41:24] 2025-11-27 21:40:22,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:41:24] 2025-11-27 21:40:22,582 | INFO     | collected zombie processes
[2025-11-27 16:41:24] 2025-11-27 21:40:22,582 | INFO     | will attempt to kill all subprocesses of pid=3124072
[2025-11-27 16:41:24] 2025-11-27 21:40:23,821 | INFO     | process IDs to be killed: [3124072] (in reverse order)
[2025-11-27 16:41:24] 2025-11-27 21:40:24,228 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:41:24] 2025-11-27 21:40:24,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:41:24] 2025-11-27 21:40:24,276 | INFO     | did not find any defunct processes belonging to 3124072
[2025-11-27 16:41:24] 2025-11-27 21:40:24,320 | INFO     | did not find any defunct processes belonging to 3124072
[2025-11-27 16:41:24] 2025-11-27 21:40:24,321 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:41:24] 2025-11-27 21:40:24,322 | INFO     | ready for new job
[2025-11-27 16:41:24] 2025-11-27 21:40:24,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:41:24] 2025-11-27 21:40:24,330 | INFO     | ***************************************
[2025-11-27 16:41:24] 2025-11-27 21:40:24,330 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:41:24] 2025-11-27 21:40:24,331 | INFO     | ***************************************
[2025-11-27 16:41:24] 2025-11-27 21:40:24,331 | INFO     | 
[2025-11-27 16:41:24] 2025-11-27 21:40:24,344 | INFO     | architecture information:
[2025-11-27 16:41:24] 2025-11-27 21:40:24,345 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:41:24] 2025-11-27 21:40:24,415 | INFO     | cat /etc/os-release:
[2025-11-27 16:41:24] NAME="CentOS Linux"
[2025-11-27 16:41:24] VERSION="7 (Core)"
[2025-11-27 16:41:24] ID="centos"
[2025-11-27 16:41:24] ID_LIKE="rhel fedora"
[2025-11-27 16:41:24] VERSION_ID="7"
[2025-11-27 16:41:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:41:24] ANSI_COLOR="0;31"
[2025-11-27 16:41:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:41:24] HOME_URL="https://www.centos.org/"
[2025-11-27 16:41:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:41:24] 
[2025-11-27 16:41:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:41:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:41:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:41:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:41:24] 
[2025-11-27 16:41:24] 2025-11-27 21:40:24,415 | INFO     | ***************************************
[2025-11-27 16:41:24] 2025-11-27 21:40:24,919 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 16:41:24] 2025-11-27 21:40:24,962 | INFO     | sufficient remaining disk space (89486524416 B)
[2025-11-27 16:41:24] 2025-11-27 21:40:24,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:41:24] 2025-11-27 21:40:24,963 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:41:24] 2025-11-27 21:40:24,963 | INFO     | update_server=False
[2025-11-27 16:41:24] 2025-11-27 21:40:24,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:41:24] 2025-11-27 21:40:24,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:41:24] 2025-11-27 21:40:25,192 | INFO     | all job control threads have been joined
[2025-11-27 16:41:24] 2025-11-27 21:40:25,279 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 16:41:24] 2025-11-27 21:40:25,279 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 16:41:24] 2025-11-27 21:40:25,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:41:24] 2025-11-27 21:40:25,279 | INFO     | will abort loop
[2025-11-27 16:41:24] 2025-11-27 21:40:25,405 | INFO     | all payload control threads have been joined
[2025-11-27 16:41:24] 2025-11-27 21:40:25,559 | INFO     | all data control threads have been joined
[2025-11-27 16:41:24] 2025-11-27 21:40:25,969 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:41:24] 2025-11-27 21:40:26,198 | INFO     | [job] control thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,285 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,411 | INFO     | [payload] control thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,468 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,565 | INFO     | [data] control thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,681 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,681 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,760 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:41:24] 2025-11-27 21:40:26,868 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:26,970 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:27,023 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:27,340 | INFO     | [job] validate thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:27,350 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:27,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:30,829 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:41:24] 2025-11-27 21:40:54,883 | INFO     | PID=3090216 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:41:24] 2025-11-27 21:40:54,883 | INFO     | .. there are 45 such processes running
[2025-11-27 16:41:24] 2025-11-27 21:40:54,883 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:41:24] 2025-11-27 21:40:54,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:41:24] 2025-11-27 21:40:54,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:41:24] 2025-11-27 21:41:15,846 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:41:24] 2025-11-27 21:41:17,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360951727936)>', '<ExcThread(monitor, started 140360470755072)>']
[2025-11-27 16:41:24] 2025-11-27 21:41:18,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:41:24] 2025-11-27 21:41:18,030 | INFO     | [monitor] control thread has ended
[2025-11-27 16:41:24] 2025-11-27 21:41:22,594 | INFO     | all workflow threads have been joined
[2025-11-27 16:41:24] 2025-11-27 21:41:22,594 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:41:24] 2025-11-27 21:41:22,594 | INFO     | traces error code: 0
[2025-11-27 16:41:24] 2025-11-27 21:41:22,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:41:24] 2025-11-27 21:41:23,891 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:41:24] 2025-11-27 21:41:23,916 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:41:24] 2025-11-27 21:41:23,934 [wrapper] pilotpid: 3090216
[2025-11-27 16:41:24] 2025-11-27 21:41:23,950 [wrapper] Pilot exit status: 0
[2025-11-27 16:41:24] 2025-11-27 21:41:24,020 [wrapper] pandaids: 6898178653
[2025-11-27 16:41:24] 2025-11-27 21:41:24,349 [wrapper] cleanup supervisor_pilot 2516390 3090217
[2025-11-27 16:41:24] 2025-11-27 21:41:24,377 [wrapper] Test setup, not cleaning
[2025-11-27 16:41:24] 2025-11-27 21:41:24,404 [wrapper] apfmon messages muted
[2025-11-27 16:41:24] 2025-11-27 21:41:24,427 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:41:24] 2025-11-27 21:41:24,447 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:41:24]  *** Error codes and diagnostics ***
[2025-11-27 16:41:24]     "exeErrorCode": 0,
[2025-11-27 16:41:24]     "exeErrorDiag": "",
[2025-11-27 16:41:24]     "pilotErrorCode": 0,
[2025-11-27 16:41:24]     "pilotErrorDiag": "",
[2025-11-27 16:41:24]  *** Listing of results directory ***
[2025-11-27 16:41:24] total 1321300
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:06 queuedata.json
[2025-11-27 16:41:24] -rwx------. 1 boincer umatlas     36292 Nov 25 23:09 runpilot2-wrapper.sh
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:41:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 16:41:24] -rw-r--r--. 2 boincer umatlas 411345944 Nov 27 00:02 EVNT.47483658._002475.pool.root.1
[2025-11-27 16:41:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 16:41:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 16:41:24] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:02 input.tar.gz
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:02 pandaJob.out
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 16:41:24] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:03 boinc_task_state.xml
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 16:36 init_data.xml
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas 918952947 Nov 27 16:38 HITS.47556161._004572.pool.root.1
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas      1059 Nov 27 16:39 memory_monitor_summary.json
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas   2544078 Nov 27 16:39 log.47556161._004572.job.log.tgz.1
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas      8632 Nov 27 16:40 heartbeat.json
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas        95 Nov 27 16:40 pilot_heartbeat.json
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas      5010 Nov 27 16:41 pilotlog.txt
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:41 boinc_mmap_file
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:41 wrapper_checkpoint.txt
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas   6850395 Nov 27 16:41 log.47556161._004572.job.log.1
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas       353 Nov 27 16:41 output.list
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:41 runtime_log
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas   9410560 Nov 27 16:41 result.tar.gz
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 16:41 runtime_log.err
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas       662 Nov 27 16:41 6niKDmp1Li8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFwMKDmtWc3jn.diag
[2025-11-27 16:41:24] -rw-r--r--. 1 boincer umatlas     21815 Nov 27 16:41 stderr.txt
[2025-11-27 16:41:24] HITS file was successfully produced:
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas 918952947 Nov 27 16:38 shared/HITS.pool.root.1
[2025-11-27 16:41:24]  *** Contents of shared directory: ***
[2025-11-27 16:41:24] total 1308920
[2025-11-27 16:41:24] -rw-r--r--. 2 boincer umatlas 411345944 Nov 27 00:02 ATLAS.root_0
[2025-11-27 16:41:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 16:41:24] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:02 input.tar.gz
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas 918952947 Nov 27 16:38 HITS.pool.root.1
[2025-11-27 16:41:24] -rw-------. 1 boincer umatlas   9410560 Nov 27 16:41 result.tar.gz
16:41:26 (3079531): run_atlas exited; CPU time 272303.537003
16:41:26 (3079531): called boinc_finish(0)

</stderr_txt>
]]>

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