Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:16 (1083045): wrapper (7.7.26015): starting
00:02:16 (1083045): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:02:16] Arguments: --nthreads 8
[2025-11-27 00:02:16] Threads: 8
[2025-11-27 00:02:16] Checking for CVMFS
[2025-11-27 00:02:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:18] 2.13.3.0 16090 30996 439320 153347 1 590 30305187 32935936 74787 16776704 0 442339597 99.629 398721816 52086 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:18] CVMFS is ok
[2025-11-27 00:02:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:18] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:18] Checking for apptainer binary...
[2025-11-27 00:02:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:18] Running /usr/bin/apptainer --version
[2025-11-27 00:02:18] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:18] c7-9-15.aglt2.org
[2025-11-27 00:02:18] apptainer works
[2025-11-27 00:02:18] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:02:18] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:02:19] Starting ATLAS job with PandaID=6891579520
[2025-11-27 00:02:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:14 (1083045): BOINC client no longer exists - exiting
07:20:14 (1083045): timer handler: client dead, exiting
07:21:33 (1184211): wrapper (7.7.26015): starting
07:21:33 (1184211): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 07:21:33] Arguments: --nthreads 9
[2025-11-27 07:21:33] Threads: 9
[2025-11-27 07:21:33] This job has been restarted, cleaning up previous attempt
[2025-11-27 07:21:34] Checking for CVMFS
[2025-11-27 07:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:21:34] 2.13.3.0 16090 31435 416452 153364 3 594 32811448 32935936 61657 16776704 0 449680478 99.631 406360735 52228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 07:21:34] CVMFS is ok
[2025-11-27 07:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:21:34] Further information can be found at the LHC@home message board.
[2025-11-27 07:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:21:34] Checking for apptainer binary...
[2025-11-27 07:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:21:34] Running /usr/bin/apptainer --version
[2025-11-27 07:21:34] apptainer version 1.4.4-1.el9
[2025-11-27 07:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:21:34] c7-9-15.aglt2.org
[2025-11-27 07:21:34] apptainer works
[2025-11-27 07:21:34] Set ATHENA_PROC_NUMBER=9
[2025-11-27 07:21:34] Set ATHENA_CORE_NUMBER=9
[2025-11-27 07:21:34] Starting ATLAS job with PandaID=6891579520
[2025-11-27 07:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:21:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:21:28] 2025-11-27 20:20:23,140 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:21:28] 2025-11-27 20:20:23,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:21:28] 2025-11-27 20:20:23,144 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:21:28] 2025-11-27 20:20:23,145 | INFO     | sum of square deviations: 32194029807.45535
[2025-11-27 15:21:28] 2025-11-27 20:20:23,149 | INFO     | sum of deviations: -33427673524.706573
[2025-11-27 15:21:28] 2025-11-27 20:20:23,149 | INFO     | mean x: 1764260439.0340426
[2025-11-27 15:21:28] 2025-11-27 20:20:23,149 | INFO     | mean y: 2998211.4191489364
[2025-11-27 15:21:28] 2025-11-27 20:20:23,149 | INFO     | intersect: 1834863383.9775798
[2025-11-27 15:21:28] 2025-11-27 20:20:23,149 | INFO     | chi2: 12.674647154807873
[2025-11-27 15:21:28] 2025-11-27 20:20:23,150 | INFO     | sum of square deviations: 31177681803.062336
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | sum of deviations: 133067733880.83197
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | mean x: 1764260286.5505376
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | mean y: 3023197.070967742
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | intersect: -7526918245.982957
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | chi2: 9.120588451223593
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | current chi2=9.120588451223593 (change=28.040691469948488 %)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,153 | INFO     | sum of square deviations: 30182962110.910896
[2025-11-27 15:21:28] 2025-11-27 20:20:23,176 | INFO     | sum of deviations: 308602647130.8023
[2025-11-27 15:21:28] 2025-11-27 20:20:23,176 | INFO     | mean x: 1764260134.0673914
[2025-11-27 15:21:28] 2025-11-27 20:20:23,176 | INFO     | mean y: 3050098.393478261
[2025-11-27 15:21:28] 2025-11-27 20:20:23,176 | INFO     | intersect: -18035449423.286167
[2025-11-27 15:21:28] 2025-11-27 20:20:23,177 | INFO     | chi2: 5.343957346975591
[2025-11-27 15:21:28] 2025-11-27 20:20:23,177 | INFO     | current chi2=5.343957346975591 (change=41.40775701529806 %)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,177 | INFO     | sum of square deviations: 29209610354.659393
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | sum of deviations: 480288563200.79083
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | mean x: 1764259981.5824175
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | mean y: 3076974.298901099
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | intersect: -29006344287.347843
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | chi2: 1.767820415752011
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | current chi2=1.767820415752011 (change=66.9192641151504 %)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,180 | INFO     | sum of square deviations: 28257117802.57989
[2025-11-27 15:21:28] 2025-11-27 20:20:23,183 | INFO     | sum of deviations: 488746497243.41364
[2025-11-27 15:21:28] 2025-11-27 20:20:23,183 | INFO     | mean x: 1764259829.0733333
[2025-11-27 15:21:28] 2025-11-27 20:20:23,183 | INFO     | mean y: 3078306.6844444443
[2025-11-27 15:21:28] 2025-11-27 20:20:23,183 | INFO     | intersect: -30512270700.641735
[2025-11-27 15:21:28] 2025-11-27 20:20:23,184 | INFO     | chi2: 1.653174778607124
[2025-11-27 15:21:28] 2025-11-27 20:20:23,184 | INFO     | current chi2=1.653174778607124 (change=6.48514046581581 %)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,184 | INFO     | right removable region: 449
[2025-11-27 15:21:28] 2025-11-27 20:20:23,184 | INFO     | sum of square deviations: 31177327643.34625
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | sum of deviations: -131881163482.35312
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | mean x: 1764260591.544086
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | mean y: 3012922.017204301
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | intersect: 7465895634.755247
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | chi2: 11.223951111279407
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | current chi2=11.223951111279407 (change=11.44565229950543 %)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,187 | INFO     | left removable region: 10
[2025-11-27 15:21:28] 2025-11-27 20:20:23,188 | INFO     | sum of square deviations: 26235031326.01352
[2025-11-27 15:21:28] 2025-11-27 20:20:23,190 | INFO     | sum of deviations: 357035892523.30023
[2025-11-27 15:21:28] 2025-11-27 20:20:23,190 | INFO     | mean x: 1764260103.592255
[2025-11-27 15:21:28] 2025-11-27 20:20:23,191 | INFO     | mean y: 3099346.0296127563
[2025-11-27 15:21:28] 2025-11-27 20:20:23,191 | INFO     | intersect: -24006941766.62289
[2025-11-27 15:21:28] 2025-11-27 20:20:23,191 | INFO     | chi2: 0.0732316757649676
[2025-11-27 15:21:28] 2025-11-27 20:20:23,191 | INFO     | current memory leak: 13.61 B/s (using 439 data points, chi2=0.07)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,191 | INFO     | could have reported an average CPU frequency of 3797 MHz (19 samples)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,191 | INFO     | ..............................
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . Timing measurements:
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . get job = 0 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . initial setup = 2 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . payload setup = 6 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . stage-in = 0 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . payload execution = 28661 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . stage-out = 4 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | . log creation = 1 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,192 | INFO     | ..............................
[2025-11-27 15:21:28] 2025-11-27 20:20:23,459 | INFO     | 
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | job summary report
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | --------------------------------------------------
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | PanDA job id: 6891579520
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | task id: 47493068
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | errors: (none)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | pilot state: finished 
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | transexitcode: 0
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | exeerrorcode: 0
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | exeerrordiag: 
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | exitcode: 0
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | exitmsg: OK
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | cpuconsumptiontime: 136438 s
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | nevents: 1000
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | neventsw: 0
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | pid: 1299051
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | pgrp: 1299051
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | corecount: 9
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | event service: False
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | sizes: {0: 2283476, 1: 2284333, 5: 2284595, 11: 2284651, 28671: 2322212, 28672: 2322211, 28678: 2331391, 28679: 2331447, 28702: 2331693}
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | --------------------------------------------------
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | 
[2025-11-27 15:21:28] 2025-11-27 20:20:23,460 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,500 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,501 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,501 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:21:28] 2025-11-27 20:20:23,501 | INFO     | job 6891579520 has completed (purged errors)
[2025-11-27 15:21:28] 2025-11-27 20:20:23,501 | INFO     | overall cleanup function is called
[2025-11-27 15:21:28] 2025-11-27 20:20:24,532 | INFO     | --- collectZombieJob: --- 10, [1299051]
[2025-11-27 15:21:28] 2025-11-27 20:20:24,532 | INFO     | zombie collector waiting for pid 1299051
[2025-11-27 15:21:28] 2025-11-27 20:20:24,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:21:28] 2025-11-27 20:20:24,533 | INFO     | collected zombie processes
[2025-11-27 15:21:28] 2025-11-27 20:20:24,533 | INFO     | will attempt to kill all subprocesses of pid=1299051
[2025-11-27 15:21:28] 2025-11-27 20:20:25,926 | INFO     | process IDs to be killed: [1299051] (in reverse order)
[2025-11-27 15:21:28] 2025-11-27 20:20:26,628 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:21:28] 2025-11-27 20:20:26,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:21:28] 2025-11-27 20:20:26,792 | INFO     | did not find any defunct processes belonging to 1299051
[2025-11-27 15:21:28] 2025-11-27 20:20:26,914 | INFO     | did not find any defunct processes belonging to 1299051
[2025-11-27 15:21:28] 2025-11-27 20:20:26,915 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:21:28] 2025-11-27 20:20:26,915 | INFO     | ready for new job
[2025-11-27 15:21:28] 2025-11-27 20:20:26,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:21:28] 2025-11-27 20:20:26,917 | INFO     | ***************************************
[2025-11-27 15:21:28] 2025-11-27 20:20:26,917 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:21:28] 2025-11-27 20:20:26,917 | INFO     | ***************************************
[2025-11-27 15:21:28] 2025-11-27 20:20:26,917 | INFO     | 
[2025-11-27 15:21:28] 2025-11-27 20:20:26,926 | INFO     | architecture information:
[2025-11-27 15:21:28] 2025-11-27 20:20:26,929 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:21:28] 2025-11-27 20:20:27,042 | INFO     | cat /etc/os-release:
[2025-11-27 15:21:28] NAME="CentOS Linux"
[2025-11-27 15:21:28] VERSION="7 (Core)"
[2025-11-27 15:21:28] ID="centos"
[2025-11-27 15:21:28] ID_LIKE="rhel fedora"
[2025-11-27 15:21:28] VERSION_ID="7"
[2025-11-27 15:21:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:21:28] ANSI_COLOR="0;31"
[2025-11-27 15:21:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:21:28] HOME_URL="https://www.centos.org/"
[2025-11-27 15:21:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:21:28] 
[2025-11-27 15:21:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:21:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:21:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:21:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:21:28] 
[2025-11-27 15:21:28] 2025-11-27 20:20:27,042 | INFO     | ***************************************
[2025-11-27 15:21:28] 2025-11-27 20:20:27,547 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-27 15:21:28] 2025-11-27 20:20:27,661 | INFO     | sufficient remaining disk space (57909706752 B)
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | INFO     | update_server=False
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:21:28] 2025-11-27 20:20:27,662 | INFO     | aborting loop
[2025-11-27 15:21:28] 2025-11-27 20:20:27,680 | INFO     | all data control threads have been joined
[2025-11-27 15:21:28] 2025-11-27 20:20:27,871 | INFO     | all job control threads have been joined
[2025-11-27 15:21:28] 2025-11-27 20:20:28,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:21:28] 2025-11-27 20:20:28,667 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:28,668 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:28,669 | INFO     | all payload control threads have been joined
[2025-11-27 15:21:28] 2025-11-27 20:20:28,686 | INFO     | [data] control thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:28,879 | INFO     | [job] control thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:28,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:21:28] 2025-11-27 20:20:28,967 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,141 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,420 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,608 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,642 | INFO     | [job] validate thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,643 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,643 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,669 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:29,675 | INFO     | [payload] control thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:30,009 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:30,161 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:32,954 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:21:28] 2025-11-27 20:20:36,386 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:21:28] 2025-11-27 20:20:37,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140149879928640)>', '<ExcThread(monitor, started 140149379806976)>']
[2025-11-27 15:21:28] 2025-11-27 20:20:42,840 | INFO     | all workflow threads have been joined
[2025-11-27 15:21:28] 2025-11-27 20:20:42,840 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:21:28] 2025-11-27 20:20:42,841 | INFO     | traces error code: 0
[2025-11-27 15:21:28] 2025-11-27 20:20:42,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | INFO     | PID=1223090 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | INFO     | .. there are 105 such processes running
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:21:28] 2025-11-27 20:20:57,673 | INFO     | [monitor] control thread has ended
[2025-11-27 15:21:28] 2025-11-27 20:20:58,925 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:21:28] 2025-11-27 20:20:58,945 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:21:28] 2025-11-27 20:20:58,958 [wrapper] pilotpid: 1223090
[2025-11-27 15:21:28] 2025-11-27 20:20:58,975 [wrapper] Pilot exit status: 0
[2025-11-27 15:21:28] 2025-11-27 20:20:59,062 [wrapper] pandaids: 6891579520 6891579520
[2025-11-27 15:21:28] 2025-11-27 20:20:59,352 [wrapper] cleanup supervisor_pilot 1337236 1223091
[2025-11-27 15:21:28] 2025-11-27 20:20:59,374 [wrapper] Test setup, not cleaning
[2025-11-27 15:21:28] 2025-11-27 20:20:59,402 [wrapper] apfmon messages muted
[2025-11-27 15:21:28] 2025-11-27 20:20:59,416 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:21:28] 2025-11-27 20:20:59,433 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:21:28]  *** Error codes and diagnostics ***
[2025-11-27 15:21:28]     "exeErrorCode": 0,
[2025-11-27 15:21:28]     "exeErrorDiag": "",
[2025-11-27 15:21:28]     "pilotErrorCode": 0,
[2025-11-27 15:21:28]     "pilotErrorDiag": "",
[2025-11-27 15:21:28]  *** Listing of results directory ***
[2025-11-27 15:21:28] total 1707868
[2025-11-27 15:21:28] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:45 pilot3.tar.gz
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:52 queuedata.json
[2025-11-27 15:21:28] -rwx------. 1 boincer umatlas     36292 Nov 18 11:54 runpilot2-wrapper.sh
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:21:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 15:21:28] -rw-r--r--. 3 boincer umatlas 409292096 Nov 27 00:02 EVNT.47493065._000400.pool.root.1
[2025-11-27 15:21:28] -rw-r--r--. 3 boincer umatlas 409292096 Nov 27 00:02 ATLAS.root_0
[2025-11-27 15:21:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:02 start_atlas.sh
[2025-11-27 15:21:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 15:21:28] -rw-r--r--. 2 boincer umatlas    590099 Nov 27 00:02 input.tar.gz
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 07:21 pandaJob.out
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas    991566 Nov 27 07:21 agis_schedconf.cvmfs.json
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:02 boinc_task_state.xml
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas 915697176 Nov 27 15:19 HITS.47493068._003992.pool.root.1
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas      1052 Nov 27 15:19 memory_monitor_summary.json
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas   1821461 Nov 27 15:19 log.47493068._003992.job.log.tgz.1
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas        95 Nov 27 15:20 pilot_heartbeat.json
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas      8582 Nov 27 15:20 heartbeat.json
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 15:20 init_data.xml
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas       824 Nov 27 15:20 pilotlog.txt
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas   3509872 Nov 27 15:20 log.47493068._003992.job.log.1
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas       353 Nov 27 15:20 output.list
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:20 runtime_log
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas   5355520 Nov 27 15:20 result.tar.gz
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas      8798 Nov 27 15:20 runtime_log.err
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas       784 Nov 27 15:20 nr0LDmI9df8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSUFKDm3QH3Xn.diag
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:21 boinc_mmap_file
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:21 wrapper_checkpoint.txt
[2025-11-27 15:21:28] -rw-r--r--. 1 boincer umatlas     23434 Nov 27 15:21 stderr.txt
[2025-11-27 15:21:28] HITS file was successfully produced:
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas 915697176 Nov 27 15:19 shared/HITS.pool.root.1
[2025-11-27 15:21:28]  *** Contents of shared directory: ***
[2025-11-27 15:21:28] total 1299768
[2025-11-27 15:21:28] -rw-r--r--. 3 boincer umatlas 409292096 Nov 27 00:02 ATLAS.root_0
[2025-11-27 15:21:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:02 start_atlas.sh
[2025-11-27 15:21:28] -rw-r--r--. 2 boincer umatlas    590099 Nov 27 00:02 input.tar.gz
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas 915697176 Nov 27 15:19 HITS.pool.root.1
[2025-11-27 15:21:28] -rw-------. 1 boincer umatlas   5355520 Nov 27 15:20 result.tar.gz
15:21:30 (1184211): run_atlas exited; CPU time 136829.303406
15:21:30 (1184211): called boinc_finish(0)

</stderr_txt>
]]>

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