Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:47 (3290073): wrapper (7.7.26015): starting
00:04:47 (3290073): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:04:47] Arguments: --nthreads 9
[2025-11-27 00:04:47] Threads: 9
[2025-11-27 00:04:47] Checking for CVMFS
[2025-11-27 00:04:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:49] 2.13.3.0 12977 31044 379304 153347 2 810 29025252 32935937 47922 16776704 0 168754284 99.568 186873247 32862 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:04:49] CVMFS is ok
[2025-11-27 00:04:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:49] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:49] Checking for apptainer binary...
[2025-11-27 00:04:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:49] Running /usr/bin/apptainer --version
[2025-11-27 00:04:50] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:50] c6-12-29-1.aglt2.org
[2025-11-27 00:04:50] apptainer works
[2025-11-27 00:04:50] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:04:50] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:04:50] Starting ATLAS job with PandaID=6897507435
[2025-11-27 00:04:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:07:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:07:19] 2025-11-28 03:06:31,622 | INFO     | time since job start (79242s) is within the limit (172800.0s)
[2025-11-27 22:07:19] 2025-11-28 03:06:33,508 | INFO     | monitor loop #4207: job 0:6897507435 is in state 'finished'
[2025-11-27 22:07:19] 2025-11-28 03:06:33,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:07:19] 2025-11-28 03:06:33,629 | INFO     | time since job start (79244s) is within the limit (172800.0s)
[2025-11-27 22:07:19] 2025-11-28 03:06:35,636 | INFO     | time since job start (79246s) is within the limit (172800.0s)
[2025-11-27 22:07:19] 2025-11-28 03:06:36,013 | INFO     | monitor loop #4208: job 0:6897507435 is in state 'finished'
[2025-11-27 22:07:19] 2025-11-28 03:06:36,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:07:19] 2025-11-28 03:06:38,545 | INFO     | monitor loop #4209: job 0:6897507435 is in state 'finished'
[2025-11-27 22:07:19] 2025-11-28 03:06:38,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:07:19] 2025-11-28 03:06:39,363 | INFO     | PID=3299814 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:07:19] 2025-11-28 03:06:39,363 | INFO     | .. there are 67 such processes running
[2025-11-27 22:07:19] 2025-11-28 03:06:40,365 | INFO     | time since job start (79251s) is within the limit (172800.0s)
[2025-11-27 22:07:19] 2025-11-28 03:06:41,052 | INFO     | monitor loop #4210: job 0:6897507435 is in state 'finished'
[2025-11-27 22:07:19] 2025-11-28 03:06:41,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:07:19] 2025-11-28 03:06:41,970 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 22:07:19] 2025-11-28 03:06:41,977 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2705.177291666667
[2025-11-27 22:07:19] 2025-11-28 03:06:42,004 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6897507435/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,004 | INFO     | extracted standard info from prmon json
[2025-11-27 22:07:19] 2025-11-28 03:06:42,005 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:07:19] 2025-11-28 03:06:42,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:07:19] 2025-11-28 03:06:42,040 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:07:19] 2025-11-28 03:06:42,042 | INFO     | sum of square deviations: 676561198595.5637
[2025-11-27 22:07:19] 2025-11-28 03:06:42,092 | INFO     | sum of deviations: 3184106240318.722
[2025-11-27 22:07:19] 2025-11-28 03:06:42,092 | INFO     | mean x: 1764259605.3461835
[2025-11-27 22:07:19] 2025-11-28 03:06:42,093 | INFO     | mean y: 3047149.2166538164
[2025-11-27 22:07:19] 2025-11-28 03:06:42,093 | INFO     | intersect: -8300104185.187797
[2025-11-27 22:07:19] 2025-11-28 03:06:42,094 | INFO     | chi2: 20.981579359974635
[2025-11-27 22:07:19] 2025-11-28 03:06:42,096 | INFO     | sum of square deviations: 668767878217.9341
[2025-11-27 22:07:19] 2025-11-28 03:06:42,127 | INFO     | sum of deviations: 3636281246401.9604
[2025-11-27 22:07:19] 2025-11-28 03:06:42,127 | INFO     | mean x: 1764259452.8552632
[2025-11-27 22:07:19] 2025-11-28 03:06:42,127 | INFO     | mean y: 3055995.454334365
[2025-11-27 22:07:19] 2025-11-28 03:06:42,127 | INFO     | intersect: -9589724655.584026
[2025-11-27 22:07:19] 2025-11-28 03:06:42,129 | INFO     | chi2: 17.761951476836362
[2025-11-27 22:07:19] 2025-11-28 03:06:42,129 | INFO     | current chi2=17.761951476836362 (change=15.345021592035982 %)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,129 | INFO     | right removable region: 1291
[2025-11-27 22:07:19] 2025-11-28 03:06:42,131 | INFO     | sum of square deviations: 668766021987.934
[2025-11-27 22:07:19] 2025-11-28 03:06:42,162 | INFO     | sum of deviations: 2663452346187.3354
[2025-11-27 22:07:19] 2025-11-28 03:06:42,163 | INFO     | mean x: 1764259757.8552632
[2025-11-27 22:07:19] 2025-11-28 03:06:42,163 | INFO     | mean y: 3057333.076625387
[2025-11-27 22:07:19] 2025-11-28 03:06:42,163 | INFO     | intersect: -7023348968.749938
[2025-11-27 22:07:19] 2025-11-28 03:06:42,164 | INFO     | chi2: 17.344221663074254
[2025-11-27 22:07:19] 2025-11-28 03:06:42,165 | INFO     | current chi2=17.344221663074254 (change=17.335957577336437 %)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,165 | INFO     | left removable region: 10
[2025-11-27 22:07:19] 2025-11-28 03:06:42,166 | INFO     | sum of square deviations: 651830064886.3901
[2025-11-27 22:07:19] 2025-11-28 03:06:42,201 | INFO     | sum of deviations: 2793600605112.4434
[2025-11-27 22:07:19] 2025-11-28 03:06:42,202 | INFO     | mean x: 1764259727.3754878
[2025-11-27 22:07:19] 2025-11-28 03:06:42,202 | INFO     | mean y: 3076078.485558158
[2025-11-27 22:07:19] 2025-11-28 03:06:42,202 | INFO     | intersect: -7558153922.205968
[2025-11-27 22:07:19] 2025-11-28 03:06:42,207 | INFO     | chi2: 11.353241551156101
[2025-11-27 22:07:19] 2025-11-28 03:06:42,208 | INFO     | current memory leak: 4.29 B/s (using 1281 data points, chi2=11.35)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,209 | INFO     | could have reported an average CPU frequency of 2698 MHz (47 samples)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,209 | INFO     | ..............................
[2025-11-27 22:07:19] 2025-11-28 03:06:42,209 | INFO     | . Timing measurements:
[2025-11-27 22:07:19] 2025-11-28 03:06:42,209 | INFO     | . get job = 0 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,209 | INFO     | . initial setup = 4 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,209 | INFO     | . payload setup = 39 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,210 | INFO     | . stage-in = 0 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,210 | INFO     | . payload execution = 79111 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,210 | INFO     | . stage-out = 7 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,210 | INFO     | . log creation = 1 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,210 | INFO     | ..............................
[2025-11-27 22:07:19] 2025-11-28 03:06:42,384 | INFO     | time since job start (79253s) is within the limit (172800.0s)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,701 | INFO     | 
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | job summary report
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | --------------------------------------------------
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | PanDA job id: 6897507435
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | task id: 47556161
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | errors: (none)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | pilot state: finished 
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | transexitcode: 0
[2025-11-27 22:07:19] 2025-11-28 03:06:42,702 | INFO     | exeerrorcode: 0
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | exeerrordiag: 
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | exitcode: 0
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | exitmsg: OK
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | cpuconsumptiontime: 268867 s
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | nevents: 1000
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | neventsw: 0
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | pid: 3312702
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | pgrp: 3312702
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | corecount: 9
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | event service: False
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | sizes: {0: 2284265, 1: 2284265, 12: 2284293, 22: 2284321, 28: 2284611, 33: 2284639, 79155: 2344927, 79164: 2353921, 79168: 2353977, 79195: 2354223}
[2025-11-27 22:07:19] 2025-11-28 03:06:42,703 | INFO     | --------------------------------------------------
[2025-11-27 22:07:19] 2025-11-28 03:06:42,704 | INFO     | 
[2025-11-27 22:07:19] 2025-11-28 03:06:42,704 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:07:19] 2025-11-28 03:06:42,769 | INFO     | job 6897507435 has completed (purged errors)
[2025-11-27 22:07:19] 2025-11-28 03:06:42,769 | INFO     | overall cleanup function is called
[2025-11-27 22:07:19] 2025-11-28 03:06:43,808 | INFO     | --- collectZombieJob: --- 10, [3312702]
[2025-11-27 22:07:19] 2025-11-28 03:06:43,809 | INFO     | zombie collector waiting for pid 3312702
[2025-11-27 22:07:19] 2025-11-28 03:06:43,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:07:19] 2025-11-28 03:06:43,809 | INFO     | collected zombie processes
[2025-11-27 22:07:19] 2025-11-28 03:06:43,809 | INFO     | will attempt to kill all subprocesses of pid=3312702
[2025-11-27 22:07:19] 2025-11-28 03:06:44,982 | INFO     | process IDs to be killed: [3312702] (in reverse order)
[2025-11-27 22:07:19] 2025-11-28 03:06:45,232 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:07:19] 2025-11-28 03:06:45,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:07:19] 2025-11-28 03:06:45,265 | INFO     | did not find any defunct processes belonging to 3312702
[2025-11-27 22:07:19] 2025-11-28 03:06:45,298 | INFO     | did not find any defunct processes belonging to 3312702
[2025-11-27 22:07:19] 2025-11-28 03:06:45,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:07:19] 2025-11-28 03:06:45,300 | INFO     | ready for new job
[2025-11-27 22:07:19] 2025-11-28 03:06:45,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:07:19] 2025-11-28 03:06:45,306 | INFO     | ***************************************
[2025-11-27 22:07:19] 2025-11-28 03:06:45,306 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:07:19] 2025-11-28 03:06:45,306 | INFO     | ***************************************
[2025-11-27 22:07:19] 2025-11-28 03:06:45,306 | INFO     | 
[2025-11-27 22:07:19] 2025-11-28 03:06:45,312 | INFO     | architecture information:
[2025-11-27 22:07:19] 2025-11-28 03:06:45,312 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:07:19] 2025-11-28 03:06:45,365 | INFO     | cat /etc/os-release:
[2025-11-27 22:07:19] NAME="CentOS Linux"
[2025-11-27 22:07:19] VERSION="7 (Core)"
[2025-11-27 22:07:19] ID="centos"
[2025-11-27 22:07:19] ID_LIKE="rhel fedora"
[2025-11-27 22:07:19] VERSION_ID="7"
[2025-11-27 22:07:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:07:19] ANSI_COLOR="0;31"
[2025-11-27 22:07:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:07:19] HOME_URL="https://www.centos.org/"
[2025-11-27 22:07:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:07:19] 
[2025-11-27 22:07:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:07:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:07:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:07:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:07:19] 
[2025-11-27 22:07:19] 2025-11-28 03:06:45,365 | INFO     | ***************************************
[2025-11-27 22:07:19] 2025-11-28 03:06:45,869 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 22:07:19] 2025-11-28 03:06:45,942 | INFO     | sufficient remaining disk space (87350575104 B)
[2025-11-27 22:07:19] 2025-11-28 03:06:45,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:07:19] 2025-11-28 03:06:45,942 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:07:19] 2025-11-28 03:06:45,943 | INFO     | update_server=False
[2025-11-27 22:07:19] 2025-11-28 03:06:45,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:07:19] 2025-11-28 03:06:45,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:07:19] 2025-11-28 03:06:46,084 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 22:07:19] 2025-11-28 03:06:46,085 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 22:07:19] 2025-11-28 03:06:46,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:07:19] 2025-11-28 03:06:46,085 | INFO     | will abort loop
[2025-11-27 22:07:19] 2025-11-28 03:06:46,804 | INFO     | all data control threads have been joined
[2025-11-27 22:07:19] 2025-11-28 03:06:46,950 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:46,958 | INFO     | all payload control threads have been joined
[2025-11-27 22:07:19] 2025-11-28 03:06:47,090 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:47,131 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:47,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:47,505 | INFO     | all job control threads have been joined
[2025-11-27 22:07:19] 2025-11-28 03:06:47,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:07:19] 2025-11-28 03:06:47,697 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:47,810 | INFO     | [data] control thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:47,958 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:47,964 | INFO     | [payload] control thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,012 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,090 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,108 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,109 | INFO     | [job] validate thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,203 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,511 | INFO     | [job] control thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,645 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:06:48,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:07:19] 2025-11-28 03:06:52,955 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:07:19] 2025-11-28 03:07:13,280 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:07:19] 2025-11-28 03:07:13,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251032590144)>', '<ExcThread(monitor, started 140250395432704)>']
[2025-11-27 22:07:19] 2025-11-28 03:07:16,492 | INFO     | PID=3299814 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:07:19] 2025-11-28 03:07:16,492 | INFO     | .. there are 67 such processes running
[2025-11-27 22:07:19] 2025-11-28 03:07:16,493 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:07:19] 2025-11-28 03:07:16,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:07:19] 2025-11-28 03:07:16,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:07:19] 2025-11-28 03:07:16,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:07:19] 2025-11-28 03:07:16,494 | INFO     | [monitor] control thread has ended
[2025-11-27 22:07:19] 2025-11-28 03:07:18,339 | INFO     | all workflow threads have been joined
[2025-11-27 22:07:19] 2025-11-28 03:07:18,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:07:19] 2025-11-28 03:07:18,340 | INFO     | traces error code: 0
[2025-11-27 22:07:19] 2025-11-28 03:07:18,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:07:19] 2025-11-28 03:07:18,716 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:07:19] 2025-11-28 03:07:18,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:07:19] 2025-11-28 03:07:18,720 [wrapper] pilotpid: 3299814
[2025-11-27 22:07:19] 2025-11-28 03:07:18,722 [wrapper] Pilot exit status: 0
[2025-11-27 22:07:19] 2025-11-28 03:07:18,740 [wrapper] pandaids: 6897507435
[2025-11-27 22:07:19] 2025-11-28 03:07:18,886 [wrapper] cleanup supervisor_pilot  223567 3299815
[2025-11-27 22:07:19] 2025-11-28 03:07:18,892 [wrapper] Test setup, not cleaning
[2025-11-27 22:07:19] 2025-11-28 03:07:18,908 [wrapper] apfmon messages muted
[2025-11-27 22:07:19] 2025-11-28 03:07:18,944 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:07:19] 2025-11-28 03:07:18,967 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:07:19]  *** Error codes and diagnostics ***
[2025-11-27 22:07:19]     "exeErrorCode": 0,
[2025-11-27 22:07:19]     "exeErrorDiag": "",
[2025-11-27 22:07:19]     "pilotErrorCode": 0,
[2025-11-27 22:07:19]     "pilotErrorDiag": "",
[2025-11-27 22:07:19]  *** Listing of results directory ***
[2025-11-27 22:07:19] total 1348712
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 22:07:19] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:07:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 22:07:19] -rw-r--r--. 2 boincer umatlas 411304827 Nov 27 00:04 EVNT.47483658._002271.pool.root.1
[2025-11-27 22:07:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 22:07:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 22:07:19] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:04 input.tar.gz
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:04 pandaJob.out
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 22:07:19] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:30 boinc_task_state.xml
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 22:02 init_data.xml
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas 942356210 Nov 27 22:05 HITS.47556161._002542.pool.root.1
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas      1059 Nov 27 22:05 memory_monitor_summary.json
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas   2437918 Nov 27 22:06 log.47556161._002542.job.log.tgz.1
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas      8621 Nov 27 22:06 heartbeat.json
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:07 boinc_mmap_file
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas        95 Nov 27 22:07 pilot_heartbeat.json
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:07 wrapper_checkpoint.txt
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas      5010 Nov 27 22:07 pilotlog.txt
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas   9306520 Nov 27 22:07 log.47556161._002542.job.log.1
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas       353 Nov 27 22:07 output.list
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:07 runtime_log
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas  11765760 Nov 27 22:07 result.tar.gz
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 22:07 runtime_log.err
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas       662 Nov 27 22:07 EWGMDm5aBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqeJKDmLQ8dSo.diag
[2025-11-27 22:07:19] -rw-r--r--. 1 boincer umatlas     21857 Nov 27 22:07 stderr.txt
[2025-11-27 22:07:19] HITS file was successfully produced:
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas 942356210 Nov 27 22:05 shared/HITS.pool.root.1
[2025-11-27 22:07:19]  *** Contents of shared directory: ***
[2025-11-27 22:07:19] total 1334036
[2025-11-27 22:07:19] -rw-r--r--. 2 boincer umatlas 411304827 Nov 27 00:04 ATLAS.root_0
[2025-11-27 22:07:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 22:07:19] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:04 input.tar.gz
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas 942356210 Nov 27 22:05 HITS.pool.root.1
[2025-11-27 22:07:19] -rw-------. 1 boincer umatlas  11765760 Nov 27 22:07 result.tar.gz
22:07:20 (3290073): run_atlas exited; CPU time 272448.976160
22:07:20 (3290073): called boinc_finish(0)

</stderr_txt>
]]>

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