Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:26 (1819612): wrapper (7.7.26015): starting
00:12:26 (1819612): wrapper: running run_atlas (--nthreads 10)
[2025-11-27 00:12:26] Arguments: --nthreads 10
[2025-11-27 00:12:26] Threads: 10
[2025-11-27 00:12:26] Checking for CVMFS
[2025-11-27 00:12:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:12:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:12:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:12:27] 2.13.2.0 7884 37653 214124 153347 0 664 32681376 40960000 37151 16776704 0 387873230 99.729 276404001 47147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:12:27] CVMFS is ok
[2025-11-27 00:12:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:12:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:12:27] Further information can be found at the LHC@home message board.
[2025-11-27 00:12:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:12:27] Checking for apptainer binary...
[2025-11-27 00:12:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:12:27] Running /usr/bin/apptainer --version
[2025-11-27 00:12:27] apptainer version 1.4.4-1.el9
[2025-11-27 00:12:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:12:28] c-208-38.aglt2.org
[2025-11-27 00:12:28] apptainer works
[2025-11-27 00:12:28] Set ATHENA_PROC_NUMBER=10
[2025-11-27 00:12:28] Set ATHENA_CORE_NUMBER=10
[2025-11-27 00:12:28] Starting ATLAS job with PandaID=6898176679
[2025-11-27 00:12:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:30:58]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:30:58] 2025-11-27 14:29:59,128 | INFO     | monitor loop #2023: job 0:6898176679 is in state 'finished'
[2025-11-27 09:30:58] 2025-11-27 14:29:59,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:30:58] 2025-11-27 14:29:59,199 | INFO     | time since job start (33365s) is within the limit (172800.0s)
[2025-11-27 09:30:58] 2025-11-27 14:30:01,207 | INFO     | time since job start (33367s) is within the limit (172800.0s)
[2025-11-27 09:30:58] 2025-11-27 14:30:01,638 | INFO     | monitor loop #2024: job 0:6898176679 is in state 'finished'
[2025-11-27 09:30:58] 2025-11-27 14:30:01,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:30:58] 2025-11-27 14:30:03,213 | INFO     | time since job start (33369s) is within the limit (172800.0s)
[2025-11-27 09:30:58] 2025-11-27 14:30:04,149 | INFO     | monitor loop #2025: job 0:6898176679 is in state 'finished'
[2025-11-27 09:30:58] 2025-11-27 14:30:04,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:30:58] 2025-11-27 14:30:05,220 | INFO     | time since job start (33371s) is within the limit (172800.0s)
[2025-11-27 09:30:58] 2025-11-27 14:30:06,669 | INFO     | monitor loop #2026: job 0:6898176679 is in state 'finished'
[2025-11-27 09:30:58] 2025-11-27 14:30:06,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:30:58] 2025-11-27 14:30:07,227 | INFO     | time since job start (33373s) is within the limit (172800.0s)
[2025-11-27 09:30:58] 2025-11-27 14:30:09,178 | INFO     | monitor loop #2027: job 0:6898176679 is in state 'finished'
[2025-11-27 09:30:58] 2025-11-27 14:30:09,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,098 | INFO     | PID=1824435 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:30:58] 2025-11-27 14:30:10,098 | INFO     | .. there are 29 such processes running
[2025-11-27 09:30:58] 2025-11-27 14:30:10,296 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 09:30:58] 2025-11-27 14:30:10,315 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3732.7569374999985
[2025-11-27 09:30:58] 2025-11-27 14:30:10,354 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6898176679/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,355 | INFO     | extracted standard info from prmon json
[2025-11-27 09:30:58] 2025-11-27 14:30:10,355 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:30:58] 2025-11-27 14:30:10,355 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:30:58] 2025-11-27 14:30:10,362 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:30:58] 2025-11-27 14:30:10,362 | INFO     | sum of square deviations: 49930665595.99836
[2025-11-27 09:30:58] 2025-11-27 14:30:10,366 | INFO     | sum of deviations: 1074574950599.1412
[2025-11-27 09:30:58] 2025-11-27 14:30:10,366 | INFO     | mean x: 1764237182.5606618
[2025-11-27 09:30:58] 2025-11-27 14:30:10,366 | INFO     | mean y: 3007208.8290441176
[2025-11-27 09:30:58] 2025-11-27 14:30:10,366 | INFO     | intersect: -37965745273.55782
[2025-11-27 09:30:58] 2025-11-27 14:30:10,367 | INFO     | chi2: 22.646443689873827
[2025-11-27 09:30:58] 2025-11-27 14:30:10,367 | INFO     | sum of square deviations: 48567647001.75885
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | sum of deviations: 1275843723572.541
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | mean x: 1764237030.1076066
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | mean y: 3029718.4044526904
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | intersect: -46342446760.52679
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | chi2: 19.157959547598722
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | current chi2=19.157959547598722 (change=15.404114615289256 %)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,371 | INFO     | right removable region: 538
[2025-11-27 09:30:58] 2025-11-27 14:30:10,372 | INFO     | sum of square deviations: 48565967671.75886
[2025-11-27 09:30:58] 2025-11-27 14:30:10,375 | INFO     | sum of deviations: 831196818189.8855
[2025-11-27 09:30:58] 2025-11-27 14:30:10,375 | INFO     | mean x: 1764237335.1076066
[2025-11-27 09:30:58] 2025-11-27 14:30:10,375 | INFO     | mean y: 3034410.8812615955
[2025-11-27 09:30:58] 2025-11-27 14:30:10,375 | INFO     | intersect: -30191534538.806824
[2025-11-27 09:30:58] 2025-11-27 14:30:10,376 | INFO     | chi2: 17.44389804624736
[2025-11-27 09:30:58] 2025-11-27 14:30:10,376 | INFO     | current chi2=17.44389804624736 (change=22.972903449528122 %)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,376 | INFO     | left removable region: 10
[2025-11-27 09:30:58] 2025-11-27 14:30:10,376 | INFO     | sum of square deviations: 45653567213.81632
[2025-11-27 09:30:58] 2025-11-27 14:30:10,379 | INFO     | sum of deviations: 858273529432.0906
[2025-11-27 09:30:58] 2025-11-27 14:30:10,380 | INFO     | mean x: 1764237304.7140152
[2025-11-27 09:30:58] 2025-11-27 14:30:10,380 | INFO     | mean y: 3088112.6363636362
[2025-11-27 09:30:58] 2025-11-27 14:30:10,380 | INFO     | intersect: -33164050200.58637
[2025-11-27 09:30:58] 2025-11-27 14:30:10,380 | INFO     | chi2: 8.953366240565709
[2025-11-27 09:30:58] 2025-11-27 14:30:10,380 | INFO     | current memory leak: 18.80 B/s (using 528 data points, chi2=8.95)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | could have reported an average CPU frequency of 3742 MHz (22 samples)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | ..............................
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . Timing measurements:
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . get job = 0 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . initial setup = 6 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . payload setup = 65 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . stage-in = 0 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . payload execution = 33191 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . stage-out = 4 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | . log creation = 0 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,381 | INFO     | ..............................
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | 
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | job summary report
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | --------------------------------------------------
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | PanDA job id: 6898176679
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | task id: 47556173
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | errors: (none)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | pilot state: finished 
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | transexitcode: 0
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | exeerrorcode: 0
[2025-11-27 09:30:58] 2025-11-27 14:30:10,430 | INFO     | exeerrordiag: 
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | exitcode: 0
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | exitmsg: OK
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | cpuconsumptiontime: 140350 s
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | nevents: 1000
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | neventsw: 0
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | pid: 1837579
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | pgrp: 1837579
[2025-11-27 09:30:58] 2025-11-27 14:30:10,431 | INFO     | corecount: 10
[2025-11-27 09:30:58] 2025-11-27 14:30:10,432 | INFO     | event service: False
[2025-11-27 09:30:58] 2025-11-27 14:30:10,432 | INFO     | sizes: {0: 2283385, 1: 2284071, 2: 2284270, 13: 2284270, 24: 2284326, 35: 2284354, 41: 2284772, 46: 2284800, 33257: 2325322, 33261: 2334318, 33265: 2334374, 33298:
[2025-11-27 09:30:58] 2025-11-27 14:30:10,432 | INFO     | --------------------------------------------------
[2025-11-27 09:30:58] 2025-11-27 14:30:10,432 | INFO     | 
[2025-11-27 09:30:58] 2025-11-27 14:30:10,432 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 09:30:58] 2025-11-27 14:30:10,460 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,460 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,461 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,462 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,464 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:30:58] 2025-11-27 14:30:10,464 | INFO     | job 6898176679 has completed (purged errors)
[2025-11-27 09:30:58] 2025-11-27 14:30:10,464 | INFO     | overall cleanup function is called
[2025-11-27 09:30:58] 2025-11-27 14:30:11,487 | INFO     | --- collectZombieJob: --- 10, [1837579]
[2025-11-27 09:30:58] 2025-11-27 14:30:11,487 | INFO     | zombie collector waiting for pid 1837579
[2025-11-27 09:30:58] 2025-11-27 14:30:11,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:30:58] 2025-11-27 14:30:11,488 | INFO     | collected zombie processes
[2025-11-27 09:30:58] 2025-11-27 14:30:11,488 | INFO     | will attempt to kill all subprocesses of pid=1837579
[2025-11-27 09:30:58] 2025-11-27 14:30:12,338 | INFO     | process IDs to be killed: [1837579] (in reverse order)
[2025-11-27 09:30:58] 2025-11-27 14:30:12,540 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:30:58] 2025-11-27 14:30:12,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:30:58] 2025-11-27 14:30:12,565 | INFO     | did not find any defunct processes belonging to 1837579
[2025-11-27 09:30:58] 2025-11-27 14:30:12,587 | INFO     | did not find any defunct processes belonging to 1837579
[2025-11-27 09:30:58] 2025-11-27 14:30:12,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:30:58] 2025-11-27 14:30:12,588 | INFO     | ready for new job
[2025-11-27 09:30:58] 2025-11-27 14:30:12,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:30:58] 2025-11-27 14:30:12,590 | INFO     | ***************************************
[2025-11-27 09:30:58] 2025-11-27 14:30:12,590 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:30:58] 2025-11-27 14:30:12,590 | INFO     | ***************************************
[2025-11-27 09:30:58] 2025-11-27 14:30:12,590 | INFO     | 
[2025-11-27 09:30:58] 2025-11-27 14:30:12,595 | INFO     | architecture information:
[2025-11-27 09:30:58] 2025-11-27 14:30:12,595 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:30:58] 2025-11-27 14:30:12,701 | INFO     | cat /etc/os-release:
[2025-11-27 09:30:58] NAME="CentOS Linux"
[2025-11-27 09:30:58] VERSION="7 (Core)"
[2025-11-27 09:30:58] ID="centos"
[2025-11-27 09:30:58] ID_LIKE="rhel fedora"
[2025-11-27 09:30:58] VERSION_ID="7"
[2025-11-27 09:30:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:30:58] ANSI_COLOR="0;31"
[2025-11-27 09:30:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:30:58] HOME_URL="https://www.centos.org/"
[2025-11-27 09:30:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:30:58] 
[2025-11-27 09:30:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:30:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:30:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:30:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:30:58] 
[2025-11-27 09:30:58] 2025-11-27 14:30:12,701 | INFO     | ***************************************
[2025-11-27 09:30:58] 2025-11-27 14:30:13,204 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 09:30:58] 2025-11-27 14:30:13,334 | INFO     | sufficient remaining disk space (163898720256 B)
[2025-11-27 09:30:58] 2025-11-27 14:30:13,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:30:58] 2025-11-27 14:30:13,335 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:30:58] 2025-11-27 14:30:13,335 | INFO     | update_server=False
[2025-11-27 09:30:58] 2025-11-27 14:30:13,335 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:30:58] 2025-11-27 14:30:13,335 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:30:58] 2025-11-27 14:30:13,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:30:58] 2025-11-27 14:30:13,335 | INFO     | aborting loop
[2025-11-27 09:30:58] 2025-11-27 14:30:13,557 | INFO     | all payload control threads have been joined
[2025-11-27 09:30:58] 2025-11-27 14:30:13,658 | INFO     | all job control threads have been joined
[2025-11-27 09:30:58] 2025-11-27 14:30:13,944 | INFO     | all data control threads have been joined
[2025-11-27 09:30:58] 2025-11-27 14:30:14,340 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,341 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,415 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,511 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,563 | INFO     | [payload] control thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,666 | INFO     | [job] control thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,874 | INFO     | [job] validate thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:14,949 | INFO     | [data] control thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:15,133 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:15,134 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:15,150 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:15,333 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:15,341 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:15,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:30:58] 2025-11-27 14:30:15,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:30:58] 2025-11-27 14:30:15,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:16,449 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:19,523 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:30:58] 2025-11-27 14:30:44,095 | INFO     | PID=1824435 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:30:58] 2025-11-27 14:30:44,095 | INFO     | .. there are 29 such processes running
[2025-11-27 09:30:58] 2025-11-27 14:30:44,096 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:30:58] 2025-11-27 14:30:44,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:30:58] 2025-11-27 14:30:44,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:30:58] 2025-11-27 14:30:51,804 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:30:58] 2025-11-27 14:30:52,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183442065216)>', '<ExcThread(monitor, started 140182951024384)>']
[2025-11-27 09:30:58] 2025-11-27 14:30:53,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:30:58] 2025-11-27 14:30:53,165 | INFO     | [monitor] control thread has ended
[2025-11-27 09:30:58] 2025-11-27 14:30:57,253 | INFO     | all workflow threads have been joined
[2025-11-27 09:30:58] 2025-11-27 14:30:57,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:30:58] 2025-11-27 14:30:57,254 | INFO     | traces error code: 0
[2025-11-27 09:30:58] 2025-11-27 14:30:57,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:30:58] 2025-11-27 14:30:57,590 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:30:58] 2025-11-27 14:30:57,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:30:58] 2025-11-27 14:30:57,598 [wrapper] pilotpid: 1824435
[2025-11-27 09:30:58] 2025-11-27 14:30:57,603 [wrapper] Pilot exit status: 0
[2025-11-27 09:30:58] 2025-11-27 14:30:57,727 [wrapper] pandaids: 6898176679
[2025-11-27 09:30:58] 2025-11-27 14:30:57,903 [wrapper] cleanup supervisor_pilot  198192 1824436
[2025-11-27 09:30:58] 2025-11-27 14:30:57,910 [wrapper] Test setup, not cleaning
[2025-11-27 09:30:58] 2025-11-27 14:30:57,940 [wrapper] apfmon messages muted
[2025-11-27 09:30:58] 2025-11-27 14:30:57,983 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:30:58] 2025-11-27 14:30:58,029 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:30:58]  *** Error codes and diagnostics ***
[2025-11-27 09:30:58]     "exeErrorCode": 0,
[2025-11-27 09:30:58]     "exeErrorDiag": "",
[2025-11-27 09:30:58]     "pilotErrorCode": 0,
[2025-11-27 09:30:58]     "pilotErrorDiag": "",
[2025-11-27 09:30:58]  *** Listing of results directory ***
[2025-11-27 09:30:58] total 1324080
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 09:30:58] -rwx------. 1 boincer umatlas     36292 Nov 25 23:02 runpilot2-wrapper.sh
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:30:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:12 run_atlas
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:12 job.xml
[2025-11-27 09:30:58] -rw-r--r--. 2 boincer umatlas 411509420 Nov 27 00:12 EVNT.47483658._003169.pool.root.1
[2025-11-27 09:30:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:12 start_atlas.sh
[2025-11-27 09:30:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:12 shared
[2025-11-27 09:30:58] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:12 input.tar.gz
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:12 boinc_lockfile
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:12 pandaJob.out
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas        57 Nov 27 00:12 setup.sh.local
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas    991570 Nov 27 00:13 agis_schedconf.cvmfs.json
[2025-11-27 09:30:58] drwx------. 5 boincer umatlas      4096 Nov 27 00:13 pilot3
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:16 boinc_task_state.xml
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas      7176 Nov 27 09:27 init_data.xml
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas 927893933 Nov 27 09:28 HITS.47556173._001257.pool.root.1
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas      1072 Nov 27 09:29 memory_monitor_summary.json
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas   2004763 Nov 27 09:29 log.47556173._001257.job.log.tgz.1
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas      8644 Nov 27 09:30 heartbeat.json
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas        95 Nov 27 09:30 pilot_heartbeat.json
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:30 boinc_mmap_file
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:30 wrapper_checkpoint.txt
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas      4826 Nov 27 09:30 pilotlog.txt
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas   4260043 Nov 27 09:30 log.47556173._001257.job.log.1
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas       353 Nov 27 09:30 output.list
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:30 runtime_log
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas   6287360 Nov 27 09:30 result.tar.gz
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas      9363 Nov 27 09:30 runtime_log.err
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas       666 Nov 27 09:30 lq2LDmpuLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNuMKDmFL7rbm.diag
[2025-11-27 09:30:58] -rw-r--r--. 1 boincer umatlas     21908 Nov 27 09:30 stderr.txt
[2025-11-27 09:30:58] HITS file was successfully produced:
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas 927893933 Nov 27 09:28 shared/HITS.pool.root.1
[2025-11-27 09:30:58]  *** Contents of shared directory: ***
[2025-11-27 09:30:58] total 1314756
[2025-11-27 09:30:58] -rw-r--r--. 2 boincer umatlas 411509420 Nov 27 00:12 ATLAS.root_0
[2025-11-27 09:30:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:12 start_atlas.sh
[2025-11-27 09:30:58] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:12 input.tar.gz
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas 927893933 Nov 27 09:28 HITS.pool.root.1
[2025-11-27 09:30:58] -rw-------. 1 boincer umatlas   6287360 Nov 27 09:30 result.tar.gz
09:31:00 (1819612): run_atlas exited; CPU time 140689.101812
09:31:00 (1819612): called boinc_finish(0)

</stderr_txt>
]]>

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