Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:17 (1613): wrapper (7.7.26015): starting
00:01:17 (1613): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:01:17] Arguments: --nthreads 8
[2025-11-27 00:01:17] Threads: 8
[2025-11-27 00:01:17] Checking for CVMFS
[2025-11-27 00:01:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:17] 2.11.2.0 2934 177817 83516 153347 1 81 11641800 20275201 1 130560 1 66914086 99.951 8083080 23198 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:01:17] CVMFS is ok
[2025-11-27 00:01:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:17] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:17] Checking for apptainer binary...
[2025-11-27 00:01:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:17] Running /usr/bin/apptainer --version
[2025-11-27 00:01:17] apptainer version 1.3.2-1.el7
[2025-11-27 00:01:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:19] c-204-33.aglt2.org
[2025-11-27 00:01:19] apptainer works
[2025-11-27 00:01:19] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:01:19] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:01:19] Starting ATLAS job with PandaID=6898177891
[2025-11-27 00:01:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:37:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:37:12] 2025-11-27 17:36:36,477 | INFO     | time since job start (45300s) is within the limit (172800.0s)
[2025-11-27 12:37:12] 2025-11-27 17:36:38,482 | INFO     | time since job start (45302s) is within the limit (172800.0s)
[2025-11-27 12:37:12] 2025-11-27 17:36:38,917 | INFO     | monitor loop #3334: job 0:6898177891 is in state 'finished'
[2025-11-27 12:37:12] 2025-11-27 17:36:38,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,611 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 12:37:12] 2025-11-27 17:36:39,615 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-27 12:37:12] 2025-11-27 17:36:39,617 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898177891/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,617 | INFO     | extracted standard info from prmon json
[2025-11-27 12:37:12] 2025-11-27 17:36:39,617 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:37:12] 2025-11-27 17:36:39,618 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:37:12] 2025-11-27 17:36:39,630 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:37:12] 2025-11-27 17:36:39,630 | INFO     | sum of square deviations: 126674202132.6207
[2025-11-27 12:37:12] 2025-11-27 17:36:39,645 | INFO     | sum of deviations: 905369362310.5801
[2025-11-27 12:37:12] 2025-11-27 17:36:39,645 | INFO     | mean x: 1764242329.0768194
[2025-11-27 12:37:12] 2025-11-27 17:36:39,645 | INFO     | mean y: 2864876.568733154
[2025-11-27 12:37:12] 2025-11-27 17:36:39,645 | INFO     | intersect: -12606576710.956244
[2025-11-27 12:37:12] 2025-11-27 17:36:39,646 | INFO     | chi2: 5.942634014580578
[2025-11-27 12:37:12] 2025-11-27 17:36:39,647 | INFO     | sum of square deviations: 124130740793.44644
[2025-11-27 12:37:12] 2025-11-27 17:36:39,658 | INFO     | sum of deviations: 1140787600385.212
[2025-11-27 12:37:12] 2025-11-27 17:36:39,658 | INFO     | mean x: 1764242176.5807326
[2025-11-27 12:37:12] 2025-11-27 17:36:39,658 | INFO     | mean y: 2878987.198100407
[2025-11-27 12:37:12] 2025-11-27 17:36:39,658 | INFO     | intersect: -16210877462.293537
[2025-11-27 12:37:12] 2025-11-27 17:36:39,659 | INFO     | chi2: 2.9558983182536096
[2025-11-27 12:37:12] 2025-11-27 17:36:39,659 | INFO     | current chi2=2.9558983182536096 (change=50.259458835910955 %)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,660 | INFO     | sum of square deviations: 121621559166.7486
[2025-11-27 12:37:12] 2025-11-27 17:36:39,671 | INFO     | sum of deviations: 1213933592746.0762
[2025-11-27 12:37:12] 2025-11-27 17:36:39,671 | INFO     | mean x: 1764242024.0846994
[2025-11-27 12:37:12] 2025-11-27 17:36:39,671 | INFO     | mean y: 2883423.256830601
[2025-11-27 12:37:12] 2025-11-27 17:36:39,672 | INFO     | intersect: -17606434147.112576
[2025-11-27 12:37:12] 2025-11-27 17:36:39,672 | INFO     | chi2: 2.4972464367399216
[2025-11-27 12:37:12] 2025-11-27 17:36:39,672 | INFO     | current chi2=2.4972464367399216 (change=15.516497258426215 %)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,673 | INFO     | right removable region: 731
[2025-11-27 12:37:12] 2025-11-27 17:36:39,673 | INFO     | sum of square deviations: 124130479713.44655
[2025-11-27 12:37:12] 2025-11-27 17:36:39,685 | INFO     | sum of deviations: 704780821763.5438
[2025-11-27 12:37:12] 2025-11-27 17:36:39,685 | INFO     | mean x: 1764242481.5807326
[2025-11-27 12:37:12] 2025-11-27 17:36:39,685 | INFO     | mean y: 2876881.0664857533
[2025-11-27 12:37:12] 2025-11-27 17:36:39,685 | INFO     | intersect: -10014036521.90274
[2025-11-27 12:37:12] 2025-11-27 17:36:39,686 | INFO     | chi2: 3.6894199775811596
[2025-11-27 12:37:12] 2025-11-27 17:36:39,686 | INFO     | current chi2=3.6894199775811596 (change=37.91608285940265 %)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,687 | INFO     | sum of square deviations: 121621081841.91664
[2025-11-27 12:37:12] 2025-11-27 17:36:39,698 | INFO     | sum of deviations: 658727747073.9166
[2025-11-27 12:37:12] 2025-11-27 17:36:39,698 | INFO     | mean x: 1764242634.0833333
[2025-11-27 12:37:12] 2025-11-27 17:36:39,698 | INFO     | mean y: 2879679.7718579234
[2025-11-27 12:37:12] 2025-11-27 17:36:39,698 | INFO     | intersect: -9552664129.25328
[2025-11-27 12:37:12] 2025-11-27 17:36:39,699 | INFO     | chi2: 3.643387632964243
[2025-11-27 12:37:12] 2025-11-27 17:36:39,699 | INFO     | current chi2=3.643387632964243 (change=1.247685134699578 %)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,699 | INFO     | left removable region: 20
[2025-11-27 12:37:12] 2025-11-27 17:36:39,700 | INFO     | sum of square deviations: 111451435116.07889
[2025-11-27 12:37:12] 2025-11-27 17:36:39,711 | INFO     | sum of deviations: 877290141472.2681
[2025-11-27 12:37:12] 2025-11-27 17:36:39,711 | INFO     | mean x: 1764242603.589311
[2025-11-27 12:37:12] 2025-11-27 17:36:39,711 | INFO     | mean y: 2904030.9563994375
[2025-11-27 12:37:12] 2025-11-27 17:36:39,711 | INFO     | intersect: -13884334313.549923
[2025-11-27 12:37:12] 2025-11-27 17:36:39,712 | INFO     | chi2: 0.11104500876436672
[2025-11-27 12:37:12] 2025-11-27 17:36:39,712 | INFO     | current memory leak: 7.87 B/s (using 711 data points, chi2=0.11)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,712 | INFO     | could have reported an average CPU frequency of 2160 MHz (28 samples)
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | ..............................
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | . Timing measurements:
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | . get job = 0 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | . initial setup = 2 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | . payload setup = 8 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | . stage-in = 0 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,713 | INFO     | . payload execution = 45261 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,714 | INFO     | . stage-out = 3 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,714 | INFO     | . log creation = 0 s
[2025-11-27 12:37:12] 2025-11-27 17:36:39,714 | INFO     | ..............................
[2025-11-27 12:37:12] 2025-11-27 17:36:40,268 | INFO     | 
[2025-11-27 12:37:12] 2025-11-27 17:36:40,268 | INFO     | job summary report
[2025-11-27 12:37:12] 2025-11-27 17:36:40,268 | INFO     | --------------------------------------------------
[2025-11-27 12:37:12] 2025-11-27 17:36:40,269 | INFO     | PanDA job id: 6898177891
[2025-11-27 12:37:12] 2025-11-27 17:36:40,271 | INFO     | task id: 47556173
[2025-11-27 12:37:12] 2025-11-27 17:36:40,272 | INFO     | errors: (none)
[2025-11-27 12:37:12] 2025-11-27 17:36:40,272 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:37:12] 2025-11-27 17:36:40,272 | INFO     | pilot state: finished 
[2025-11-27 12:37:12] 2025-11-27 17:36:40,272 | INFO     | transexitcode: 0
[2025-11-27 12:37:12] 2025-11-27 17:36:40,272 | INFO     | exeerrorcode: 0
[2025-11-27 12:37:12] 2025-11-27 17:36:40,272 | INFO     | exeerrordiag: 
[2025-11-27 12:37:12] 2025-11-27 17:36:40,273 | INFO     | exitcode: 0
[2025-11-27 12:37:12] 2025-11-27 17:36:40,273 | INFO     | exitmsg: OK
[2025-11-27 12:37:12] 2025-11-27 17:36:40,273 | INFO     | cpuconsumptiontime: 350911 s
[2025-11-27 12:37:12] 2025-11-27 17:36:40,273 | INFO     | nevents: 1000
[2025-11-27 12:37:12] 2025-11-27 17:36:40,273 | INFO     | neventsw: 0
[2025-11-27 12:37:12] 2025-11-27 17:36:40,274 | INFO     | pid: 12949
[2025-11-27 12:37:12] 2025-11-27 17:36:40,274 | INFO     | pgrp: 12949
[2025-11-27 12:37:12] 2025-11-27 17:36:40,274 | INFO     | corecount: 8
[2025-11-27 12:37:12] 2025-11-27 17:36:40,274 | INFO     | event service: False
[2025-11-27 12:37:12] 2025-11-27 17:36:40,274 | INFO     | sizes: {0: 2284264, 6: 2284526, 11: 2284554, 45274: 2330593, 45275: 2330592, 45279: 2339642, 45280: 2339826, 45287: 2340072}
[2025-11-27 12:37:12] 2025-11-27 17:36:40,275 | INFO     | --------------------------------------------------
[2025-11-27 12:37:12] 2025-11-27 17:36:40,275 | INFO     | 
[2025-11-27 12:37:12] 2025-11-27 17:36:40,275 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:37:12] 2025-11-27 17:36:40,301 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,302 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,302 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,303 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,303 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:37:12] 2025-11-27 17:36:40,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,305 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:37:12] 2025-11-27 17:36:40,305 | INFO     | job 6898177891 has completed (purged errors)
[2025-11-27 12:37:12] 2025-11-27 17:36:40,305 | INFO     | overall cleanup function is called
[2025-11-27 12:37:12] 2025-11-27 17:36:41,318 | INFO     | --- collectZombieJob: --- 10, [12949]
[2025-11-27 12:37:12] 2025-11-27 17:36:41,318 | INFO     | zombie collector waiting for pid 12949
[2025-11-27 12:37:12] 2025-11-27 17:36:41,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:37:12] 2025-11-27 17:36:41,319 | INFO     | collected zombie processes
[2025-11-27 12:37:12] 2025-11-27 17:36:41,319 | INFO     | will attempt to kill all subprocesses of pid=12949
[2025-11-27 12:37:12] 2025-11-27 17:36:41,416 | INFO     | process IDs to be killed: [12949] (in reverse order)
[2025-11-27 12:37:12] 2025-11-27 17:36:41,471 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:37:12] 2025-11-27 17:36:41,471 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:37:12] 2025-11-27 17:36:41,476 | INFO     | did not find any defunct processes belonging to 12949
[2025-11-27 12:37:12] 2025-11-27 17:36:41,479 | INFO     | did not find any defunct processes belonging to 12949
[2025-11-27 12:37:12] 2025-11-27 17:36:41,482 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:37:12] 2025-11-27 17:36:41,482 | INFO     | ready for new job
[2025-11-27 12:37:12] 2025-11-27 17:36:41,482 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:37:12] 2025-11-27 17:36:41,486 | INFO     | ***************************************
[2025-11-27 12:37:12] 2025-11-27 17:36:41,487 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:37:12] 2025-11-27 17:36:41,487 | INFO     | ***************************************
[2025-11-27 12:37:12] 2025-11-27 17:36:41,487 | INFO     | 
[2025-11-27 12:37:12] 2025-11-27 17:36:41,488 | INFO     | architecture information:
[2025-11-27 12:37:12] 2025-11-27 17:36:41,488 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:37:12] 2025-11-27 17:36:41,507 | INFO     | cat /etc/os-release:
[2025-11-27 12:37:12] NAME="CentOS Linux"
[2025-11-27 12:37:12] VERSION="7 (Core)"
[2025-11-27 12:37:12] ID="centos"
[2025-11-27 12:37:12] ID_LIKE="rhel fedora"
[2025-11-27 12:37:12] VERSION_ID="7"
[2025-11-27 12:37:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:37:12] ANSI_COLOR="0;31"
[2025-11-27 12:37:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:37:12] HOME_URL="https://www.centos.org/"
[2025-11-27 12:37:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:37:12] 
[2025-11-27 12:37:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:37:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:37:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:37:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:37:12] 
[2025-11-27 12:37:12] 2025-11-27 17:36:41,507 | INFO     | ***************************************
[2025-11-27 12:37:12] 2025-11-27 17:36:42,010 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:37:12] 2025-11-27 17:36:42,031 | INFO     | sufficient remaining disk space (17461936128 B)
[2025-11-27 12:37:12] 2025-11-27 17:36:42,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:37:12] 2025-11-27 17:36:42,032 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:37:12] 2025-11-27 17:36:42,032 | INFO     | update_server=False
[2025-11-27 12:37:12] 2025-11-27 17:36:42,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:37:12] 2025-11-27 17:36:42,297 | INFO     | all payload control threads have been joined
[2025-11-27 12:37:12] 2025-11-27 17:36:42,349 | INFO     | all data control threads have been joined
[2025-11-27 12:37:12] 2025-11-27 17:36:42,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:37:12] 2025-11-27 17:36:42,423 | INFO     | aborting loop
[2025-11-27 12:37:12] 2025-11-27 17:36:42,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:37:12] 2025-11-27 17:36:43,037 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,080 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,188 | INFO     | [job] validate thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,305 | INFO     | [payload] control thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,352 | INFO     | [data] control thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:37:12] 2025-11-27 17:36:43,428 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,429 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,571 | INFO     | all job control threads have been joined
[2025-11-27 12:37:12] 2025-11-27 17:36:43,586 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,617 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:43,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:44,572 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:44,577 | INFO     | [job] control thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:44,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:37:12] 2025-11-27 17:36:44,877 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:45,814 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:47,375 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:37:12] 2025-11-27 17:36:51,274 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:37:12] 2025-11-27 17:36:52,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140552308143936)>', '<ExcThread(monitor, started 140551571621632)>']
[2025-11-27 12:37:12] 2025-11-27 17:36:57,717 | INFO     | all workflow threads have been joined
[2025-11-27 12:37:12] 2025-11-27 17:36:57,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:37:12] 2025-11-27 17:36:57,718 | INFO     | traces error code: 0
[2025-11-27 12:37:12] 2025-11-27 17:36:57,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:37:12] 2025-11-27 17:37:11,707 | INFO     | PID=5395 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 12:37:12] 2025-11-27 17:37:11,708 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:37:12] 2025-11-27 17:37:11,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:37:12] 2025-11-27 17:37:11,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:37:12] 2025-11-27 17:37:11,709 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:37:12] 2025-11-27 17:37:11,709 | INFO     | [monitor] control thread has ended
[2025-11-27 12:37:12] 2025-11-27 17:37:11,829 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:37:12] 2025-11-27 17:37:11,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:37:12] 2025-11-27 17:37:11,837 [wrapper] pilotpid: 5395
[2025-11-27 12:37:12] 2025-11-27 17:37:11,841 [wrapper] Pilot exit status: 0
[2025-11-27 12:37:12] 2025-11-27 17:37:11,856 [wrapper] pandaids: 6898177891
[2025-11-27 12:37:12] 2025-11-27 17:37:11,899 [wrapper] cleanup supervisor_pilot 19761 5396
[2025-11-27 12:37:12] 2025-11-27 17:37:11,904 [wrapper] Test setup, not cleaning
[2025-11-27 12:37:12] 2025-11-27 17:37:11,909 [wrapper] apfmon messages muted
[2025-11-27 12:37:12] 2025-11-27 17:37:11,914 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:37:12] 2025-11-27 17:37:11,919 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:37:12]  *** Error codes and diagnostics ***
[2025-11-27 12:37:12]     "exeErrorCode": 0,
[2025-11-27 12:37:12]     "exeErrorDiag": "",
[2025-11-27 12:37:12]     "pilotErrorCode": 0,
[2025-11-27 12:37:12]     "pilotErrorDiag": "",
[2025-11-27 12:37:12]  *** Listing of results directory ***
[2025-11-27 12:37:12] total 1321572
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:03 queuedata.json
[2025-11-27 12:37:12] -rwx------ 1 boincer umatlas     36292 Nov 25 23:04 runpilot2-wrapper.sh
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:37:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 12:37:12] -rw-r--r-- 2 boincer umatlas 410550768 Nov 27 00:01 EVNT.47483658._003173.pool.root.1
[2025-11-27 12:37:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 12:37:12] drwxrwx--x 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 12:37:12] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 00:01 input.tar.gz
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 12:37:12] drwx------ 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas       532 Nov 27 12:25 boinc_task_state.xml
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas 922354350 Nov 27 12:35 HITS.47556173._001296.pool.root.1
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas      1062 Nov 27 12:36 memory_monitor_summary.json
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas   1516240 Nov 27 12:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas   1988461 Nov 27 12:36 log.47556173._001296.job.log.tgz.1
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas      8673 Nov 27 12:36 heartbeat.json
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 12:36 init_data.xml
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 12:36 boinc_mmap_file
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas        29 Nov 27 12:36 wrapper_checkpoint.txt
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas        95 Nov 27 12:37 pilot_heartbeat.json
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas       744 Nov 27 12:37 pilotlog.txt
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas   6243172 Nov 27 12:37 log.47556173._001296.job.log.1
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas       353 Nov 27 12:37 output.list
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas       620 Nov 27 12:37 runtime_log
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas   8253440 Nov 27 12:37 result.tar.gz
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 12:37 runtime_log.err
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas       668 Nov 27 12:37 dUUMDmmwLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVuMKDmT8D3un.diag
[2025-11-27 12:37:12] -rw-r--r-- 1 boincer umatlas     21318 Nov 27 12:37 stderr.txt
[2025-11-27 12:37:12] HITS file was successfully produced:
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas 922354350 Nov 27 12:35 shared/HITS.pool.root.1
[2025-11-27 12:37:12]  *** Contents of shared directory: ***
[2025-11-27 12:37:12] total 1310332
[2025-11-27 12:37:12] -rw-r--r-- 2 boincer umatlas 410550768 Nov 27 00:01 ATLAS.root_0
[2025-11-27 12:37:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 12:37:12] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 00:01 input.tar.gz
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas 922354350 Nov 27 12:35 HITS.pool.root.1
[2025-11-27 12:37:12] -rw------- 1 boincer umatlas   8253440 Nov 27 12:37 result.tar.gz
12:37:14 (1613): run_atlas exited; CPU time 347291.933227
12:37:14 (1613): called boinc_finish(0)

</stderr_txt>
]]>

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