Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:20 (2032575): wrapper (7.7.26015): starting
00:02:20 (2032575): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:20] Arguments: --nthreads 9
[2025-11-27 00:02:20] Threads: 9
[2025-11-27 00:02:20] Checking for CVMFS
[2025-11-27 00:02:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:22] 2.13.3.0 11836 29565 357296 153347 1 555 17847758 32935937 47580 16776704 0 131007550 99.527 149703884 35074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:22] CVMFS is ok
[2025-11-27 00:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:22] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:22] Checking for apptainer binary...
[2025-11-27 00:02:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:23] Running /usr/bin/apptainer --version
[2025-11-27 00:02:23] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:24] c6-2-11-1.aglt2.org
[2025-11-27 00:02:24] apptainer works
[2025-11-27 00:02:24] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:24] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:24] Starting ATLAS job with PandaID=6898120843
[2025-11-27 00:02:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:17:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:17:08] 2025-11-28 00:16:17,777 | INFO     | .. there are 60 such processes running
[2025-11-27 19:17:08] 2025-11-28 00:16:18,017 | INFO     | monitor loop #3112: job 0:6898120843 is in state 'finished'
[2025-11-27 19:17:08] 2025-11-28 00:16:18,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:17:08] 2025-11-28 00:16:18,778 | INFO     | time since job start (69160s) is within the limit (172800.0s)
[2025-11-27 19:17:08] 2025-11-28 00:16:20,525 | INFO     | monitor loop #3113: job 0:6898120843 is in state 'finished'
[2025-11-27 19:17:08] 2025-11-28 00:16:20,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:17:08] 2025-11-28 00:16:20,784 | INFO     | time since job start (69162s) is within the limit (172800.0s)
[2025-11-27 19:17:08] 2025-11-28 00:16:22,791 | INFO     | time since job start (69164s) is within the limit (172800.0s)
[2025-11-27 19:17:08] 2025-11-28 00:16:23,034 | INFO     | monitor loop #3114: job 0:6898120843 is in state 'finished'
[2025-11-27 19:17:08] 2025-11-28 00:16:23,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:17:08] 2025-11-28 00:16:24,801 | INFO     | time since job start (69166s) is within the limit (172800.0s)
[2025-11-27 19:17:08] 2025-11-28 00:16:25,542 | INFO     | monitor loop #3115: job 0:6898120843 is in state 'finished'
[2025-11-27 19:17:08] 2025-11-28 00:16:25,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:17:08] 2025-11-28 00:16:26,810 | INFO     | time since job start (69168s) is within the limit (172800.0s)
[2025-11-27 19:17:08] 2025-11-28 00:16:27,908 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:17:08] 2025-11-28 00:16:27,929 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2654.3907395833335
[2025-11-27 19:17:08] 2025-11-28 00:16:28,018 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898120843/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,019 | INFO     | extracted standard info from prmon json
[2025-11-27 19:17:08] 2025-11-28 00:16:28,019 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:17:08] 2025-11-28 00:16:28,019 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:17:08] 2025-11-28 00:16:28,083 | INFO     | monitor loop #3116: job 0:6898120843 is in state 'finished'
[2025-11-27 19:17:08] 2025-11-28 00:16:28,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,084 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:17:08] 2025-11-28 00:16:28,086 | INFO     | sum of square deviations: 448591734853.7575
[2025-11-27 19:17:08] 2025-11-28 00:16:28,194 | INFO     | sum of deviations: 2997209679590.3423
[2025-11-27 19:17:08] 2025-11-28 00:16:28,194 | INFO     | mean x: 1764254460.4703803
[2025-11-27 19:17:08] 2025-11-28 00:16:28,195 | INFO     | mean y: 2994488.920424403
[2025-11-27 19:17:08] 2025-11-28 00:16:28,195 | INFO     | intersect: -11784651460.254534
[2025-11-27 19:17:08] 2025-11-28 00:16:28,204 | INFO     | chi2: 18.544034727190965
[2025-11-27 19:17:08] 2025-11-28 00:16:28,206 | INFO     | sum of square deviations: 442669085891.5705
[2025-11-27 19:17:08] 2025-11-28 00:16:28,285 | INFO     | sum of deviations: 3391754694666.672
[2025-11-27 19:17:08] 2025-11-28 00:16:28,293 | INFO     | mean x: 1764254307.9804618
[2025-11-27 19:17:08] 2025-11-28 00:16:28,293 | INFO     | mean y: 3004645.076376554
[2025-11-27 19:17:08] 2025-11-28 00:16:28,293 | INFO     | intersect: -13514808146.450615
[2025-11-27 19:17:08] 2025-11-28 00:16:28,295 | INFO     | chi2: 15.285633772936373
[2025-11-27 19:17:08] 2025-11-28 00:16:28,295 | INFO     | current chi2=15.285633772936373 (change=17.571154294037346 %)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,295 | INFO     | right removable region: 1125
[2025-11-27 19:17:08] 2025-11-28 00:16:28,296 | INFO     | sum of square deviations: 442667450660.60736
[2025-11-27 19:17:08] 2025-11-28 00:16:28,385 | INFO     | sum of deviations: 2542606409566.536
[2025-11-27 19:17:08] 2025-11-28 00:16:28,386 | INFO     | mean x: 1764254612.98135
[2025-11-27 19:17:08] 2025-11-28 00:16:28,386 | INFO     | mean y: 3006189.0728241564
[2025-11-27 19:17:08] 2025-11-28 00:16:28,386 | INFO     | intersect: -10130571692.877594
[2025-11-27 19:17:08] 2025-11-28 00:16:28,387 | INFO     | chi2: 14.700344998792993
[2025-11-27 19:17:08] 2025-11-28 00:16:28,388 | INFO     | current chi2=14.700344998792993 (change=20.727364810000072 %)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,388 | INFO     | left removable region: 10
[2025-11-27 19:17:08] 2025-11-28 00:16:28,397 | INFO     | sum of square deviations: 429820027858.72296
[2025-11-27 19:17:08] 2025-11-28 00:16:28,471 | INFO     | sum of deviations: 2616906400363.498
[2025-11-27 19:17:08] 2025-11-28 00:16:28,472 | INFO     | mean x: 1764254582.5049326
[2025-11-27 19:17:08] 2025-11-28 00:16:28,472 | INFO     | mean y: 3029416.3650224213
[2025-11-27 19:17:08] 2025-11-28 00:16:28,472 | INFO     | intersect: -10738417723.3325
[2025-11-27 19:17:08] 2025-11-28 00:16:28,473 | INFO     | chi2: 7.603023538010391
[2025-11-27 19:17:08] 2025-11-28 00:16:28,473 | INFO     | current memory leak: 6.09 B/s (using 1115 data points, chi2=7.60)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | could have reported an average CPU frequency of 2665 MHz (41 samples)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | ..............................
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . Timing measurements:
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . get job = 0 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . initial setup = 5 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . payload setup = 55 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . stage-in = 0 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . payload execution = 68986 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . stage-out = 9 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | . log creation = 2 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,475 | INFO     | ..............................
[2025-11-27 19:17:08] 2025-11-28 00:16:28,740 | INFO     | 
[2025-11-27 19:17:08] 2025-11-28 00:16:28,740 | INFO     | job summary report
[2025-11-27 19:17:08] 2025-11-28 00:16:28,740 | INFO     | --------------------------------------------------
[2025-11-27 19:17:08] 2025-11-28 00:16:28,740 | INFO     | PanDA job id: 6898120843
[2025-11-27 19:17:08] 2025-11-28 00:16:28,740 | INFO     | task id: 47556161
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | errors: (none)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | pilot state: finished 
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | transexitcode: 0
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | exeerrorcode: 0
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | exeerrordiag: 
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | exitcode: 0
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | exitmsg: OK
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | cpuconsumptiontime: 258232 s
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | nevents: 1000
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | neventsw: 0
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | pid: 2091164
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | pgrp: 2091164
[2025-11-27 19:17:08] 2025-11-28 00:16:28,741 | INFO     | corecount: 9
[2025-11-27 19:17:08] 2025-11-28 00:16:28,742 | INFO     | event service: False
[2025-11-27 19:17:08] 2025-11-28 00:16:28,742 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 24: 2284320, 35: 2284404, 36: 2284638, 46: 2284794, 69047: 2339617, 69057: 2348611, 69060: 2348667, 69089: 2349009}
[2025-11-27 19:17:08] 2025-11-28 00:16:28,742 | INFO     | --------------------------------------------------
[2025-11-27 19:17:08] 2025-11-28 00:16:28,742 | INFO     | 
[2025-11-27 19:17:08] 2025-11-28 00:16:28,742 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 19:17:08] 2025-11-28 00:16:28,817 | INFO     | time since job start (69170s) is within the limit (172800.0s)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,834 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,834 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,836 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:17:08] 2025-11-28 00:16:28,836 | INFO     | job 6898120843 has completed (purged errors)
[2025-11-27 19:17:08] 2025-11-28 00:16:28,836 | INFO     | overall cleanup function is called
[2025-11-27 19:17:08] 2025-11-28 00:16:29,867 | INFO     | --- collectZombieJob: --- 10, [2091164]
[2025-11-27 19:17:08] 2025-11-28 00:16:29,867 | INFO     | zombie collector waiting for pid 2091164
[2025-11-27 19:17:08] 2025-11-28 00:16:29,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:17:08] 2025-11-28 00:16:29,867 | INFO     | collected zombie processes
[2025-11-27 19:17:08] 2025-11-28 00:16:29,867 | INFO     | will attempt to kill all subprocesses of pid=2091164
[2025-11-27 19:17:08] 2025-11-28 00:16:32,113 | INFO     | process IDs to be killed: [2091164] (in reverse order)
[2025-11-27 19:17:08] 2025-11-28 00:16:33,052 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:17:08] 2025-11-28 00:16:33,054 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:17:08] 2025-11-28 00:16:33,162 | INFO     | did not find any defunct processes belonging to 2091164
[2025-11-27 19:17:08] 2025-11-28 00:16:33,296 | INFO     | did not find any defunct processes belonging to 2091164
[2025-11-27 19:17:08] 2025-11-28 00:16:33,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:17:08] 2025-11-28 00:16:33,301 | INFO     | ready for new job
[2025-11-27 19:17:08] 2025-11-28 00:16:33,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:17:08] 2025-11-28 00:16:33,317 | INFO     | ***************************************
[2025-11-27 19:17:08] 2025-11-28 00:16:33,317 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:17:08] 2025-11-28 00:16:33,317 | INFO     | ***************************************
[2025-11-27 19:17:08] 2025-11-28 00:16:33,317 | INFO     | 
[2025-11-27 19:17:08] 2025-11-28 00:16:33,325 | INFO     | architecture information:
[2025-11-27 19:17:08] 2025-11-28 00:16:33,328 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:17:08] 2025-11-28 00:16:33,426 | INFO     | cat /etc/os-release:
[2025-11-27 19:17:08] NAME="CentOS Linux"
[2025-11-27 19:17:08] VERSION="7 (Core)"
[2025-11-27 19:17:08] ID="centos"
[2025-11-27 19:17:08] ID_LIKE="rhel fedora"
[2025-11-27 19:17:08] VERSION_ID="7"
[2025-11-27 19:17:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:17:08] ANSI_COLOR="0;31"
[2025-11-27 19:17:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:17:08] HOME_URL="https://www.centos.org/"
[2025-11-27 19:17:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:17:08] 
[2025-11-27 19:17:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:17:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:17:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:17:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:17:08] 
[2025-11-27 19:17:08] 2025-11-28 00:16:33,427 | INFO     | ***************************************
[2025-11-27 19:17:08] 2025-11-28 00:16:33,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 19:17:08] 2025-11-28 00:16:34,069 | INFO     | sufficient remaining disk space (86398468096 B)
[2025-11-27 19:17:08] 2025-11-28 00:16:34,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:17:08] 2025-11-28 00:16:34,070 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:17:08] 2025-11-28 00:16:34,070 | INFO     | update_server=False
[2025-11-27 19:17:08] 2025-11-28 00:16:34,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:17:08] 2025-11-28 00:16:34,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:17:08] 2025-11-28 00:16:34,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:17:08] 2025-11-28 00:16:34,164 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:17:08] 2025-11-28 00:16:34,164 | INFO     | aborting loop
[2025-11-27 19:17:08] 2025-11-28 00:16:34,191 | INFO     | all data control threads have been joined
[2025-11-27 19:17:08] 2025-11-28 00:16:34,429 | INFO     | all payload control threads have been joined
[2025-11-27 19:17:08] 2025-11-28 00:16:34,637 | INFO     | all job control threads have been joined
[2025-11-27 19:17:08] 2025-11-28 00:16:35,075 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,097 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,135 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,171 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,173 | INFO     | [job] validate thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,199 | INFO     | [data] control thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,227 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,228 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,288 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,435 | INFO     | [payload] control thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:17:08] 2025-11-28 00:16:35,500 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,570 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:35,643 | INFO     | [job] control thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:36,162 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:37,501 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:38,128 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:17:08] 2025-11-28 00:16:54,295 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:17:08] 2025-11-28 00:16:55,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165483509568)>', '<ExcThread(monitor, started 140164764522240)>']
[2025-11-27 19:17:08] 2025-11-28 00:17:00,803 | INFO     | all workflow threads have been joined
[2025-11-27 19:17:08] 2025-11-28 00:17:00,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:17:08] 2025-11-28 00:17:00,803 | INFO     | traces error code: 0
[2025-11-27 19:17:08] 2025-11-28 00:17:00,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:17:08] 2025-11-28 00:17:05,835 | INFO     | PID=2050860 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:17:08] 2025-11-28 00:17:05,836 | INFO     | .. there are 60 such processes running
[2025-11-27 19:17:08] 2025-11-28 00:17:05,837 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:17:08] 2025-11-28 00:17:05,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:17:08] 2025-11-28 00:17:05,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:17:08] 2025-11-28 00:17:05,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:17:08] 2025-11-28 00:17:05,837 | INFO     | [monitor] control thread has ended
[2025-11-27 19:17:08] 2025-11-28 00:17:06,939 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:17:08] 2025-11-28 00:17:06,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:17:08] 2025-11-28 00:17:07,003 [wrapper] pilotpid: 2050860
[2025-11-27 19:17:08] 2025-11-28 00:17:07,050 [wrapper] Pilot exit status: 0
[2025-11-27 19:17:08] 2025-11-28 00:17:07,152 [wrapper] pandaids: 6898120843
[2025-11-27 19:17:08] 2025-11-28 00:17:07,545 [wrapper] cleanup supervisor_pilot 1130495 2050861
[2025-11-27 19:17:08] 2025-11-28 00:17:07,557 [wrapper] Test setup, not cleaning
[2025-11-27 19:17:08] 2025-11-28 00:17:07,560 [wrapper] apfmon messages muted
[2025-11-27 19:17:08] 2025-11-28 00:17:07,563 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:17:08] 2025-11-28 00:17:07,565 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:17:08]  *** Error codes and diagnostics ***
[2025-11-27 19:17:08]     "exeErrorCode": 0,
[2025-11-27 19:17:08]     "exeErrorDiag": "",
[2025-11-27 19:17:08]     "pilotErrorCode": 0,
[2025-11-27 19:17:08]     "pilotErrorDiag": "",
[2025-11-27 19:17:08]  *** Listing of results directory ***
[2025-11-27 19:17:08] total 1319988
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 19:17:08] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:17:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 19:17:08] -rw-r--r--. 2 boincer umatlas 407555997 Nov 27 00:02 EVNT.47483658._002446.pool.root.1
[2025-11-27 19:17:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 19:17:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 19:17:08] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:02 input.tar.gz
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 19:17:08] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:53 boinc_task_state.xml
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas      6879 Nov 27 19:12 init_data.xml
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas 920981237 Nov 27 19:14 HITS.47556161._004288.pool.root.1
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas      1059 Nov 27 19:15 memory_monitor_summary.json
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas   2262033 Nov 27 19:15 log.47556161._004288.job.log.tgz.1
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas      8619 Nov 27 19:16 heartbeat.json
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:16 boinc_mmap_file
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:16 wrapper_checkpoint.txt
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas        95 Nov 27 19:17 pilot_heartbeat.json
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas       823 Nov 27 19:17 pilotlog.txt
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas   7344981 Nov 27 19:17 log.47556161._004288.job.log.1
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas       353 Nov 27 19:17 output.list
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:17 runtime_log
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas   9625600 Nov 27 19:17 result.tar.gz
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas       661 Nov 27 19:17 VOONDmniLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmurMKDm9gvQzn.diag
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 19:17 runtime_log.err
[2025-11-27 19:17:08] -rw-r--r--. 1 boincer umatlas     21796 Nov 27 19:17 stderr.txt
[2025-11-27 19:17:08] HITS file was successfully produced:
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas 920981237 Nov 27 19:14 shared/HITS.pool.root.1
[2025-11-27 19:17:08]  *** Contents of shared directory: ***
[2025-11-27 19:17:08] total 1307404
[2025-11-27 19:17:08] -rw-r--r--. 2 boincer umatlas 407555997 Nov 27 00:02 ATLAS.root_0
[2025-11-27 19:17:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 19:17:08] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:02 input.tar.gz
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas 920981237 Nov 27 19:14 HITS.pool.root.1
[2025-11-27 19:17:08] -rw-------. 1 boincer umatlas   9625600 Nov 27 19:17 result.tar.gz
19:17:30 (2032575): run_atlas exited; CPU time 261012.723569
19:17:30 (2032575): called boinc_finish(0)

</stderr_txt>
]]>

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