Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:09 (1359508): wrapper (7.7.26015): starting
00:01:09 (1359508): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:01:09] Arguments: --nthreads 12
[2025-11-27 00:01:09] Threads: 12
[2025-11-27 00:01:09] Checking for CVMFS
[2025-11-27 00:01:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:09] 2.13.2.0 7301 37548 258664 153347 0 570 27099339 40960001 29946 16776704 0 243202439 99.676 213703626 35561 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:01:09] CVMFS is ok
[2025-11-27 00:01:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:09] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:09] Checking for apptainer binary...
[2025-11-27 00:01:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:09] Running /usr/bin/apptainer --version
[2025-11-27 00:01:09] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:10] c-212-17.aglt2.org
[2025-11-27 00:01:10] apptainer works
[2025-11-27 00:01:10] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:01:10] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:01:10] Starting ATLAS job with PandaID=6895336122
[2025-11-27 00:01:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:19:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:19:28] 2025-11-27 23:18:39,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:19:28] 2025-11-27 23:18:40,026 | INFO     | time since job start (65836s) is within the limit (172800.0s)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,603 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 18:19:28] 2025-11-27 23:18:41,616 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3116.119760416666
[2025-11-27 18:19:28] 2025-11-27 23:18:41,630 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895336122/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,631 | INFO     | extracted standard info from prmon json
[2025-11-27 18:19:28] 2025-11-27 23:18:41,631 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:19:28] 2025-11-27 23:18:41,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:19:28] 2025-11-27 23:18:41,645 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:19:28] 2025-11-27 23:18:41,646 | INFO     | sum of square deviations: 389550393109.2601
[2025-11-27 18:19:28] 2025-11-27 23:18:41,668 | INFO     | sum of deviations: 3681398120240.759
[2025-11-27 18:19:28] 2025-11-27 23:18:41,669 | INFO     | mean x: 1764252598.1603336
[2025-11-27 18:19:28] 2025-11-27 23:18:41,669 | INFO     | mean y: 3474400.671918443
[2025-11-27 18:19:28] 2025-11-27 23:18:41,669 | INFO     | intersect: -16669377978.341469
[2025-11-27 18:19:28] 2025-11-27 23:18:41,670 | INFO     | chi2: 6.062265512292347
[2025-11-27 18:19:28] 2025-11-27 23:18:41,671 | INFO     | sum of square deviations: 384160984373.31506
[2025-11-27 18:19:28] 2025-11-27 23:18:41,692 | INFO     | sum of deviations: 4108107778801.8486
[2025-11-27 18:19:28] 2025-11-27 23:18:41,693 | INFO     | mean x: 1764252445.670391
[2025-11-27 18:19:28] 2025-11-27 23:18:41,693 | INFO     | mean y: 3486471.0363128493
[2025-11-27 18:19:28] 2025-11-27 23:18:41,693 | INFO     | intersect: -18862924983.140938
[2025-11-27 18:19:28] 2025-11-27 23:18:41,694 | INFO     | chi2: 2.9534145348292062
[2025-11-27 18:19:28] 2025-11-27 23:18:41,694 | INFO     | current chi2=2.9534145348292062 (change=51.281999628016614 %)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,695 | INFO     | sum of square deviations: 378821333896.2316
[2025-11-27 18:19:28] 2025-11-27 23:18:41,716 | INFO     | sum of deviations: 4120142047351.9746
[2025-11-27 18:19:28] 2025-11-27 23:18:41,716 | INFO     | mean x: 1764252293.1777363
[2025-11-27 18:19:28] 2025-11-27 23:18:41,717 | INFO     | mean y: 3486808.889616464
[2025-11-27 18:19:28] 2025-11-27 23:18:41,717 | INFO     | intersect: -19184899390.209408
[2025-11-27 18:19:28] 2025-11-27 23:18:41,718 | INFO     | chi2: 2.8031805305974995
[2025-11-27 18:19:28] 2025-11-27 23:18:41,718 | INFO     | current chi2=2.8031805305974995 (change=5.086790305255766 %)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,718 | INFO     | right removable region: 1068
[2025-11-27 18:19:28] 2025-11-27 23:18:41,719 | INFO     | sum of square deviations: 384159693741.99585
[2025-11-27 18:19:28] 2025-11-27 23:18:41,744 | INFO     | sum of deviations: 3341968841630.9683
[2025-11-27 18:19:28] 2025-11-27 23:18:41,745 | INFO     | mean x: 1764252750.6685288
[2025-11-27 18:19:28] 2025-11-27 23:18:41,745 | INFO     | mean y: 3483991.0139664803
[2025-11-27 18:19:28] 2025-11-27 23:18:41,745 | INFO     | intersect: -15344502321.823416
[2025-11-27 18:19:28] 2025-11-27 23:18:41,746 | INFO     | chi2: 3.9948016315829538
[2025-11-27 18:19:28] 2025-11-27 23:18:41,746 | INFO     | current chi2=3.9948016315829538 (change=34.10381608191251 %)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,747 | INFO     | sum of square deviations: 378820062160.32526
[2025-11-27 18:19:28] 2025-11-27 23:18:41,771 | INFO     | sum of deviations: 3208921285279.5117
[2025-11-27 18:19:28] 2025-11-27 23:18:41,772 | INFO     | mean x: 1764252903.160898
[2025-11-27 18:19:28] 2025-11-27 23:18:41,772 | INFO     | mean y: 3487790.4621141255
[2025-11-27 18:19:28] 2025-11-27 23:18:41,772 | INFO     | intersect: -14941202998.30917
[2025-11-27 18:19:28] 2025-11-27 23:18:41,773 | INFO     | chi2: 3.8661206009961457
[2025-11-27 18:19:28] 2025-11-27 23:18:41,773 | INFO     | current chi2=3.8661206009961457 (change=3.2212120263858437 %)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,773 | INFO     | left removable region: 20
[2025-11-27 18:19:28] 2025-11-27 23:18:41,774 | INFO     | sum of square deviations: 356932668704.82446
[2025-11-27 18:19:28] 2025-11-27 23:18:41,797 | INFO     | sum of deviations: 3402674374096.423
[2025-11-27 18:19:28] 2025-11-27 23:18:41,797 | INFO     | mean x: 1764252872.683206
[2025-11-27 18:19:28] 2025-11-27 23:18:41,797 | INFO     | mean y: 3507036.302480916
[2025-11-27 18:19:28] 2025-11-27 23:18:41,798 | INFO     | intersect: -16815289800.334633
[2025-11-27 18:19:28] 2025-11-27 23:18:41,799 | INFO     | chi2: 0.42227897369041206
[2025-11-27 18:19:28] 2025-11-27 23:18:41,799 | INFO     | current memory leak: 9.53 B/s (using 1048 data points, chi2=0.42)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,800 | INFO     | could have reported an average CPU frequency of 3203 MHz (40 samples)
[2025-11-27 18:19:28] 2025-11-27 23:18:41,800 | INFO     | ..............................
[2025-11-27 18:19:28] 2025-11-27 23:18:41,800 | INFO     | . Timing measurements:
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . get job = 0 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . initial setup = 2 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . payload setup = 8 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . stage-in = 0 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . payload execution = 65797 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . stage-out = 3 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | . log creation = 0 s
[2025-11-27 18:19:28] 2025-11-27 23:18:41,801 | INFO     | ..............................
[2025-11-27 18:19:28] 2025-11-27 23:18:42,032 | INFO     | time since job start (65838s) is within the limit (172800.0s)
[2025-11-27 18:19:28] 2025-11-27 23:18:42,247 | INFO     | 
[2025-11-27 18:19:28] 2025-11-27 23:18:42,247 | INFO     | job summary report
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | --------------------------------------------------
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | PanDA job id: 6895336122
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | task id: 47556137
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | errors: (none)
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | pilot state: finished 
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | transexitcode: 0
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | exeerrorcode: 0
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | exeerrordiag: 
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | exitcode: 0
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | exitmsg: OK
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | cpuconsumptiontime: 197203 s
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | nevents: 1000
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | neventsw: 0
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | pid: 1394818
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | pgrp: 1394818
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | corecount: 12
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | event service: False
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | sizes: {0: 2284144, 1: 2284343, 7: 2284605, 11: 2284633, 65810: 2340095, 65814: 2349273, 65820: 2349463}
[2025-11-27 18:19:28] 2025-11-27 23:18:42,248 | INFO     | --------------------------------------------------
[2025-11-27 18:19:28] 2025-11-27 23:18:42,249 | INFO     | 
[2025-11-27 18:19:28] 2025-11-27 23:18:42,249 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 18:19:28] 2025-11-27 23:18:42,268 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,268 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,268 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,268 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,268 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,269 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,270 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:19:28] 2025-11-27 23:18:42,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,270 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:19:28] 2025-11-27 23:18:42,270 | INFO     | job 6895336122 has completed (purged errors)
[2025-11-27 18:19:28] 2025-11-27 23:18:42,270 | INFO     | overall cleanup function is called
[2025-11-27 18:19:28] 2025-11-27 23:18:43,291 | INFO     | --- collectZombieJob: --- 10, [1394818]
[2025-11-27 18:19:28] 2025-11-27 23:18:43,291 | INFO     | zombie collector waiting for pid 1394818
[2025-11-27 18:19:28] 2025-11-27 23:18:43,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:19:28] 2025-11-27 23:18:43,291 | INFO     | collected zombie processes
[2025-11-27 18:19:28] 2025-11-27 23:18:43,291 | INFO     | will attempt to kill all subprocesses of pid=1394818
[2025-11-27 18:19:28] 2025-11-27 23:18:43,744 | INFO     | process IDs to be killed: [1394818] (in reverse order)
[2025-11-27 18:19:28] 2025-11-27 23:18:43,877 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:19:28] 2025-11-27 23:18:43,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:19:28] 2025-11-27 23:18:43,910 | INFO     | did not find any defunct processes belonging to 1394818
[2025-11-27 18:19:28] 2025-11-27 23:18:43,948 | INFO     | did not find any defunct processes belonging to 1394818
[2025-11-27 18:19:28] 2025-11-27 23:18:43,954 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:19:28] 2025-11-27 23:18:43,954 | INFO     | ready for new job
[2025-11-27 18:19:28] 2025-11-27 23:18:43,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:19:28] 2025-11-27 23:18:43,987 | INFO     | ***************************************
[2025-11-27 18:19:28] 2025-11-27 23:18:43,988 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:19:28] 2025-11-27 23:18:43,988 | INFO     | ***************************************
[2025-11-27 18:19:28] 2025-11-27 23:18:43,988 | INFO     | 
[2025-11-27 18:19:28] 2025-11-27 23:18:44,010 | INFO     | architecture information:
[2025-11-27 18:19:28] 2025-11-27 23:18:44,022 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:19:28] 2025-11-27 23:18:44,037 | INFO     | cat /etc/os-release:
[2025-11-27 18:19:28] NAME="CentOS Linux"
[2025-11-27 18:19:28] VERSION="7 (Core)"
[2025-11-27 18:19:28] ID="centos"
[2025-11-27 18:19:28] ID_LIKE="rhel fedora"
[2025-11-27 18:19:28] VERSION_ID="7"
[2025-11-27 18:19:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:19:28] ANSI_COLOR="0;31"
[2025-11-27 18:19:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:19:28] HOME_URL="https://www.centos.org/"
[2025-11-27 18:19:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:19:28] 
[2025-11-27 18:19:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:19:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:19:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:19:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:19:28] 
[2025-11-27 18:19:28] 2025-11-27 23:18:44,038 | INFO     | ***************************************
[2025-11-27 18:19:28] 2025-11-27 23:18:44,542 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 18:19:28] 2025-11-27 23:18:44,562 | INFO     | sufficient remaining disk space (123155251200 B)
[2025-11-27 18:19:28] 2025-11-27 23:18:44,563 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:19:28] 2025-11-27 23:18:44,563 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:19:28] 2025-11-27 23:18:44,563 | INFO     | update_server=False
[2025-11-27 18:19:28] 2025-11-27 23:18:44,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:19:28] 2025-11-27 23:18:44,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:19:28] 2025-11-27 23:18:45,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:19:28] 2025-11-27 23:18:45,317 | INFO     | aborting loop
[2025-11-27 18:19:28] 2025-11-27 23:18:45,568 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:45,633 | INFO     | all data control threads have been joined
[2025-11-27 18:19:28] 2025-11-27 23:18:45,670 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:45,682 | INFO     | all payload control threads have been joined
[2025-11-27 18:19:28] 2025-11-27 23:18:45,742 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:45,834 | INFO     | all job control threads have been joined
[2025-11-27 18:19:28] 2025-11-27 23:18:45,900 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:19:28] 2025-11-27 23:18:46,322 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,498 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,501 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,570 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,640 | INFO     | [data] control thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,688 | INFO     | [payload] control thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,841 | INFO     | [job] control thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:19:28] 2025-11-27 23:18:46,983 | INFO     | [job] validate thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:46,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:47,068 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:47,909 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:18:50,270 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:19:28] 2025-11-27 23:19:15,698 | INFO     | PID=1369099 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:19:28] 2025-11-27 23:19:15,698 | INFO     | .. there are 36 such processes running
[2025-11-27 18:19:28] 2025-11-27 23:19:15,698 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:19:28] 2025-11-27 23:19:15,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:19:28] 2025-11-27 23:19:15,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:19:28] 2025-11-27 23:19:20,830 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:19:28] 2025-11-27 23:19:22,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140586719614784)>', '<ExcThread(monitor, started 140585419667200)>']
[2025-11-27 18:19:28] 2025-11-27 23:19:22,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:19:28] 2025-11-27 23:19:22,740 | INFO     | [monitor] control thread has ended
[2025-11-27 18:19:28] 2025-11-27 23:19:27,618 | INFO     | all workflow threads have been joined
[2025-11-27 18:19:28] 2025-11-27 23:19:27,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:19:28] 2025-11-27 23:19:27,622 | INFO     | traces error code: 0
[2025-11-27 18:19:28] 2025-11-27 23:19:27,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:19:28] 2025-11-27 23:19:27,770 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:19:28] 2025-11-27 23:19:27,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:19:28] 2025-11-27 23:19:27,777 [wrapper] pilotpid: 1369099
[2025-11-27 18:19:28] 2025-11-27 23:19:27,780 [wrapper] Pilot exit status: 0
[2025-11-27 18:19:28] 2025-11-27 23:19:27,813 [wrapper] pandaids: 6895336122
[2025-11-27 18:19:28] 2025-11-27 23:19:28,012 [wrapper] cleanup supervisor_pilot 2267006 1369101
[2025-11-27 18:19:28] 2025-11-27 23:19:28,016 [wrapper] Test setup, not cleaning
[2025-11-27 18:19:28] 2025-11-27 23:19:28,018 [wrapper] apfmon messages muted
[2025-11-27 18:19:28] 2025-11-27 23:19:28,022 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:19:28] 2025-11-27 23:19:28,025 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:19:28]  *** Error codes and diagnostics ***
[2025-11-27 18:19:28]     "exeErrorCode": 0,
[2025-11-27 18:19:28]     "exeErrorDiag": "",
[2025-11-27 18:19:28]     "pilotErrorCode": 0,
[2025-11-27 18:19:28]     "pilotErrorDiag": "",
[2025-11-27 18:19:28]  *** Listing of results directory ***
[2025-11-27 18:19:28] total 1317388
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:12 queuedata.json
[2025-11-27 18:19:28] -rwx------. 1 boincer umatlas     36292 Nov 22 00:12 runpilot2-wrapper.sh
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:19:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 18:19:28] -rw-r--r--. 2 boincer umatlas 411008770 Nov 27 00:01 EVNT.47483658._000269.pool.root.1
[2025-11-27 18:19:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 18:19:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 18:19:28] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:01 input.tar.gz
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:01 pandaJob.out
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 18:19:28] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:10 boinc_task_state.xml
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas 912054695 Nov 27 18:17 HITS.47556137._002658.pool.root.1
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas      1061 Nov 27 18:18 memory_monitor_summary.json
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:18 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas        95 Nov 27 18:18 pilot_heartbeat.json
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas   2624207 Nov 27 18:18 log.47556137._002658.job.log.tgz.1
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas      8618 Nov 27 18:18 heartbeat.json
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 18:19 init_data.xml
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:19 boinc_mmap_file
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:19 wrapper_checkpoint.txt
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas      4825 Nov 27 18:19 pilotlog.txt
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas   8386370 Nov 27 18:19 log.47556137._002658.job.log.1
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas       353 Nov 27 18:19 output.list
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:19 runtime_log
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas  11028480 Nov 27 18:19 result.tar.gz
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas      9345 Nov 27 18:19 runtime_log.err
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas       664 Nov 27 18:19 kr1LDmi6ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfyJKDmlxhAbm.diag
[2025-11-27 18:19:28] -rw-r--r--. 1 boincer umatlas     21345 Nov 27 18:19 stderr.txt
[2025-11-27 18:19:28] HITS file was successfully produced:
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas 912054695 Nov 27 18:17 shared/HITS.pool.root.1
[2025-11-27 18:19:28]  *** Contents of shared directory: ***
[2025-11-27 18:19:28] total 1303432
[2025-11-27 18:19:28] -rw-r--r--. 2 boincer umatlas 411008770 Nov 27 00:01 ATLAS.root_0
[2025-11-27 18:19:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 18:19:28] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:01 input.tar.gz
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas 912054695 Nov 27 18:17 HITS.pool.root.1
[2025-11-27 18:19:28] -rw-------. 1 boincer umatlas  11028480 Nov 27 18:19 result.tar.gz
18:19:29 (1359508): run_atlas exited; CPU time 198005.762568
18:19:29 (1359508): called boinc_finish(0)

</stderr_txt>
]]>

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