Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:21 (3590171): wrapper (7.7.26015): starting
00:01:21 (3590171): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:01:21] Arguments: --nthreads 12
[2025-11-27 00:01:21] Threads: 12
[2025-11-27 00:01:21] Checking for CVMFS
[2025-11-27 00:01:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:22] 2.13.2.0 6699 36830 271148 153347 1 753 22545732 40960000 24048 16776704 0 99836816 99.616 99855010 37141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:01:22] CVMFS is ok
[2025-11-27 00:01:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:22] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:22] Checking for apptainer binary...
[2025-11-27 00:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:22] Running /usr/bin/apptainer --version
[2025-11-27 00:01:22] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:22] c-212-4.aglt2.org
[2025-11-27 00:01:22] apptainer works
[2025-11-27 00:01:22] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:01:22] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:01:22] Starting ATLAS job with PandaID=6898176644
[2025-11-27 00:01:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:47:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:47:35] 2025-11-27 17:46:55,488 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:47:35] 2025-11-27 17:46:55,488 | INFO     | job 6898176644 has state=finished
[2025-11-27 12:47:35] 2025-11-27 17:46:55,488 | INFO     | preparing for final server update for job 6898176644 in state='finished'
[2025-11-27 12:47:35] 2025-11-27 17:46:55,489 | INFO     | this job has now completed (state=finished)
[2025-11-27 12:47:35] 2025-11-27 17:46:55,489 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 12:47:35] 2025-11-27 17:46:55,489 | INFO     | log transfer has been attempted: DONE
[2025-11-27 12:47:35] 2025-11-27 17:46:55,489 | INFO     | job 6898176644 has finished - writing final server update
[2025-11-27 12:47:35] 2025-11-27 17:46:55,489 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 12:47:35] 2025-11-27 17:46:55,490 | INFO     | executing command: lscpu
[2025-11-27 12:47:35] 2025-11-27 17:46:55,553 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 12:47:35] 2025-11-27 17:46:56,883 | INFO     | monitor loop #2800: job 0:6898176644 is in state 'finished'
[2025-11-27 12:47:35] 2025-11-27 17:46:56,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:47:35] 2025-11-27 17:46:57,151 | INFO     | time since job start (45909s) is within the limit (172800.0s)
[2025-11-27 12:47:35] 2025-11-27 17:46:59,157 | INFO     | time since job start (45911s) is within the limit (172800.0s)
[2025-11-27 12:47:35] 2025-11-27 17:46:59,389 | INFO     | monitor loop #2801: job 0:6898176644 is in state 'finished'
[2025-11-27 12:47:35] 2025-11-27 17:46:59,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:47:35] 2025-11-27 17:47:00,867 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:47:35] 2025-11-27 17:47:00,871 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3074.0886979166667
[2025-11-27 12:47:35] 2025-11-27 17:47:00,883 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898176644/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:47:35] 2025-11-27 17:47:00,884 | INFO     | extracted standard info from prmon json
[2025-11-27 12:47:35] 2025-11-27 17:47:00,884 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:47:35] 2025-11-27 17:47:00,884 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:47:35] 2025-11-27 17:47:00,893 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:47:35] 2025-11-27 17:47:00,893 | INFO     | sum of square deviations: 131860213619.31879
[2025-11-27 12:47:35] 2025-11-27 17:47:00,903 | INFO     | sum of deviations: 989104575487.1505
[2025-11-27 12:47:35] 2025-11-27 17:47:00,903 | INFO     | mean x: 1764242668.8510637
[2025-11-27 12:47:35] 2025-11-27 17:47:00,903 | INFO     | mean y: 3326073.188829787
[2025-11-27 12:47:35] 2025-11-27 17:47:00,903 | INFO     | intersect: -13230540672.000385
[2025-11-27 12:47:35] 2025-11-27 17:47:00,904 | INFO     | chi2: 14.448737470549606
[2025-11-27 12:47:35] 2025-11-27 17:47:00,905 | INFO     | sum of square deviations: 129247674500.13113
[2025-11-27 12:47:35] 2025-11-27 17:47:00,914 | INFO     | sum of deviations: 1286134449033.926
[2025-11-27 12:47:35] 2025-11-27 17:47:00,914 | INFO     | mean x: 1764242516.3601072
[2025-11-27 12:47:35] 2025-11-27 17:47:00,914 | INFO     | mean y: 3343405.93708166
[2025-11-27 12:47:35] 2025-11-27 17:47:00,914 | INFO     | intersect: -17552508840.663548
[2025-11-27 12:47:35] 2025-11-27 17:47:00,915 | INFO     | chi2: 10.916498908840886
[2025-11-27 12:47:35] 2025-11-27 17:47:00,915 | INFO     | current chi2=10.916498908840886 (change=24.446693483831147 %)
[2025-11-27 12:47:35] 2025-11-27 17:47:00,915 | INFO     | right removable region: 746
[2025-11-27 12:47:35] 2025-11-27 17:47:00,916 | INFO     | sum of square deviations: 129247100369.84975
[2025-11-27 12:47:35] 2025-11-27 17:47:00,925 | INFO     | sum of deviations: 732675115144.687
[2025-11-27 12:47:35] 2025-11-27 17:47:00,925 | INFO     | mean x: 1764242821.3587685
[2025-11-27 12:47:35] 2025-11-27 17:47:00,925 | INFO     | mean y: 3341019.3145917
[2025-11-27 12:47:35] 2025-11-27 17:47:00,926 | INFO     | intersect: -9997787118.827837
[2025-11-27 12:47:35] 2025-11-27 17:47:00,926 | INFO     | chi2: 12.076825629340222
[2025-11-27 12:47:35] 2025-11-27 17:47:00,926 | INFO     | current chi2=12.076825629340222 (change=16.416049125703715 %)
[2025-11-27 12:47:35] 2025-11-27 17:47:00,926 | INFO     | left removable region: 10
[2025-11-27 12:47:35] 2025-11-27 17:47:00,927 | INFO     | sum of square deviations: 123621229986.2162
[2025-11-27 12:47:35] 2025-11-27 17:47:00,936 | INFO     | sum of deviations: 1000138979197.3562
[2025-11-27 12:47:35] 2025-11-27 17:47:00,936 | INFO     | mean x: 1764242790.8682065
[2025-11-27 12:47:35] 2025-11-27 17:47:00,936 | INFO     | mean y: 3367078.9211956523
[2025-11-27 12:47:35] 2025-11-27 17:47:00,936 | INFO     | intersect: -14269974030.142057
[2025-11-27 12:47:35] 2025-11-27 17:47:00,937 | INFO     | chi2: 7.752996462170353
[2025-11-27 12:47:35] 2025-11-27 17:47:00,937 | INFO     | current memory leak: 8.09 B/s (using 736 data points, chi2=7.75)
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | could have reported an average CPU frequency of 3042 MHz (29 samples)
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | ..............................
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . Timing measurements:
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . get job = 0 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . initial setup = 3 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . payload setup = 12 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . stage-in = 0 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . payload execution = 45854 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . stage-out = 3 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | . log creation = 0 s
[2025-11-27 12:47:35] 2025-11-27 17:47:00,938 | INFO     | ..............................
[2025-11-27 12:47:35] 2025-11-27 17:47:01,163 | INFO     | time since job start (45913s) is within the limit (172800.0s)
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | 
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | job summary report
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | --------------------------------------------------
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | PanDA job id: 6898176644
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | task id: 47556161
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | errors: (none)
[2025-11-27 12:47:35] 2025-11-27 17:47:01,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | pilot state: finished 
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | transexitcode: 0
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | exeerrorcode: 0
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | exeerrordiag: 
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | exitcode: 0
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | exitmsg: OK
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | cpuconsumptiontime: 204166 s
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | nevents: 1000
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | neventsw: 0
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | pid: 3625651
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | pgrp: 3625651
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | corecount: 12
[2025-11-27 12:47:35] 2025-11-27 17:47:01,386 | INFO     | event service: False
[2025-11-27 12:47:35] 2025-11-27 17:47:01,387 | INFO     | sizes: {0: 2283436, 1: 2284292, 12: 2284292, 15: 2284582, 22: 2284610, 45870: 2330727, 45874: 2339777, 45880: 2339967}
[2025-11-27 12:47:35] 2025-11-27 17:47:01,387 | INFO     | --------------------------------------------------
[2025-11-27 12:47:35] 2025-11-27 17:47:01,387 | INFO     | 
[2025-11-27 12:47:35] 2025-11-27 17:47:01,387 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 12:47:35] 2025-11-27 17:47:01,431 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,431 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:47:35] 2025-11-27 17:47:01,438 | INFO     | job 6898176644 has completed (purged errors)
[2025-11-27 12:47:35] 2025-11-27 17:47:01,438 | INFO     | overall cleanup function is called
[2025-11-27 12:47:35] 2025-11-27 17:47:02,469 | INFO     | --- collectZombieJob: --- 10, [3625651]
[2025-11-27 12:47:35] 2025-11-27 17:47:02,469 | INFO     | zombie collector waiting for pid 3625651
[2025-11-27 12:47:35] 2025-11-27 17:47:02,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:47:35] 2025-11-27 17:47:02,469 | INFO     | collected zombie processes
[2025-11-27 12:47:35] 2025-11-27 17:47:02,469 | INFO     | will attempt to kill all subprocesses of pid=3625651
[2025-11-27 12:47:35] 2025-11-27 17:47:02,972 | INFO     | process IDs to be killed: [3625651] (in reverse order)
[2025-11-27 12:47:35] 2025-11-27 17:47:03,128 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:47:35] 2025-11-27 17:47:03,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:47:35] 2025-11-27 17:47:03,168 | INFO     | did not find any defunct processes belonging to 3625651
[2025-11-27 12:47:35] 2025-11-27 17:47:03,186 | INFO     | did not find any defunct processes belonging to 3625651
[2025-11-27 12:47:35] 2025-11-27 17:47:03,188 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:47:35] 2025-11-27 17:47:03,188 | INFO     | ready for new job
[2025-11-27 12:47:35] 2025-11-27 17:47:03,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:47:35] 2025-11-27 17:47:03,192 | INFO     | ***************************************
[2025-11-27 12:47:35] 2025-11-27 17:47:03,192 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:47:35] 2025-11-27 17:47:03,192 | INFO     | ***************************************
[2025-11-27 12:47:35] 2025-11-27 17:47:03,192 | INFO     | 
[2025-11-27 12:47:35] 2025-11-27 17:47:03,197 | INFO     | architecture information:
[2025-11-27 12:47:35] 2025-11-27 17:47:03,198 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:47:35] 2025-11-27 17:47:03,216 | INFO     | cat /etc/os-release:
[2025-11-27 12:47:35] NAME="CentOS Linux"
[2025-11-27 12:47:35] VERSION="7 (Core)"
[2025-11-27 12:47:35] ID="centos"
[2025-11-27 12:47:35] ID_LIKE="rhel fedora"
[2025-11-27 12:47:35] VERSION_ID="7"
[2025-11-27 12:47:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:47:35] ANSI_COLOR="0;31"
[2025-11-27 12:47:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:47:35] HOME_URL="https://www.centos.org/"
[2025-11-27 12:47:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:47:35] 
[2025-11-27 12:47:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:47:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:47:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:47:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:47:35] 
[2025-11-27 12:47:35] 2025-11-27 17:47:03,217 | INFO     | ***************************************
[2025-11-27 12:47:35] 2025-11-27 17:47:03,722 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 12:47:35] 2025-11-27 17:47:03,743 | INFO     | sufficient remaining disk space (121186025472 B)
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | INFO     | update_server=False
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | INFO     | aborting loop
[2025-11-27 12:47:35] 2025-11-27 17:47:03,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:47:35] 2025-11-27 17:47:03,907 | INFO     | all job control threads have been joined
[2025-11-27 12:47:35] 2025-11-27 17:47:04,343 | INFO     | all data control threads have been joined
[2025-11-27 12:47:35] 2025-11-27 17:47:04,752 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:04,752 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:04,852 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:04,853 | INFO     | all payload control threads have been joined
[2025-11-27 12:47:35] 2025-11-27 17:47:04,865 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:04,912 | INFO     | [job] control thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,159 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,165 | INFO     | [job] validate thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,169 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,349 | INFO     | [data] control thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,409 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,752 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:05,859 | INFO     | [payload] control thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:06,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:47:35] 2025-11-27 17:47:06,010 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:06,031 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:47:35] 2025-11-27 17:47:06,323 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:07,038 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:07,836 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:47:35] 2025-11-27 17:47:10,017 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:47:35] 2025-11-27 17:47:11,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878318659392)>', '<ExcThread(monitor, started 139877689587456)>']
[2025-11-27 12:47:35] 2025-11-27 17:47:16,408 | INFO     | all workflow threads have been joined
[2025-11-27 12:47:35] 2025-11-27 17:47:16,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:47:35] 2025-11-27 17:47:16,408 | INFO     | traces error code: 0
[2025-11-27 12:47:35] 2025-11-27 17:47:16,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:47:35] 2025-11-27 17:47:34,694 | INFO     | PID=3601722 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:47:35] 2025-11-27 17:47:34,694 | INFO     | .. there are 26 such processes running
[2025-11-27 12:47:35] 2025-11-27 17:47:34,694 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:47:35] 2025-11-27 17:47:34,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:47:35] 2025-11-27 17:47:34,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:47:35] 2025-11-27 17:47:34,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:47:35] 2025-11-27 17:47:34,695 | INFO     | [monitor] control thread has ended
[2025-11-27 12:47:35] 2025-11-27 17:47:34,839 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:47:35] 2025-11-27 17:47:34,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:47:35] 2025-11-27 17:47:34,845 [wrapper] pilotpid: 3601722
[2025-11-27 12:47:35] 2025-11-27 17:47:34,850 [wrapper] Pilot exit status: 0
[2025-11-27 12:47:35] 2025-11-27 17:47:34,863 [wrapper] pandaids: 6898176644
[2025-11-27 12:47:35] 2025-11-27 17:47:34,948 [wrapper] cleanup supervisor_pilot 2131830 3601723
[2025-11-27 12:47:35] 2025-11-27 17:47:34,951 [wrapper] Test setup, not cleaning
[2025-11-27 12:47:35] 2025-11-27 17:47:34,964 [wrapper] apfmon messages muted
[2025-11-27 12:47:35] 2025-11-27 17:47:34,974 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:47:35] 2025-11-27 17:47:34,977 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:47:35]  *** Error codes and diagnostics ***
[2025-11-27 12:47:35]     "exeErrorCode": 0,
[2025-11-27 12:47:35]     "exeErrorDiag": "",
[2025-11-27 12:47:35]     "pilotErrorCode": 0,
[2025-11-27 12:47:35]     "pilotErrorDiag": "",
[2025-11-27 12:47:35]  *** Listing of results directory ***
[2025-11-27 12:47:35] total 1318728
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 12:47:35] -rwx------. 1 boincer umatlas     36292 Nov 25 23:00 runpilot2-wrapper.sh
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:47:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 12:47:35] -rw-r--r--. 2 boincer umatlas 410273957 Nov 27 00:01 EVNT.47483658._002461.pool.root.1
[2025-11-27 12:47:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 12:47:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 12:47:35] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:01 input.tar.gz
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 12:47:35] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:24 boinc_task_state.xml
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 12:40 init_data.xml
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas 919681404 Nov 27 12:45 HITS.47556161._004440.pool.root.1
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas        95 Nov 27 12:46 pilot_heartbeat.json
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas      1052 Nov 27 12:46 memory_monitor_summary.json
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas   2405044 Nov 27 12:46 log.47556161._004440.job.log.tgz.1
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas      8592 Nov 27 12:47 heartbeat.json
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:47 boinc_mmap_file
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:47 wrapper_checkpoint.txt
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas       823 Nov 27 12:47 pilotlog.txt
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas   5844414 Nov 27 12:47 log.47556161._004440.job.log.1
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas       353 Nov 27 12:47 output.list
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:47 runtime_log
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas   8273920 Nov 27 12:47 result.tar.gz
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas      9340 Nov 27 12:47 runtime_log.err
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas       659 Nov 27 12:47 98dMDmssLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqtMKDmZFXBtm.diag
[2025-11-27 12:47:35] -rw-r--r--. 1 boincer umatlas     21630 Nov 27 12:47 stderr.txt
[2025-11-27 12:47:35] HITS file was successfully produced:
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas 919681404 Nov 27 12:45 shared/HITS.pool.root.1
[2025-11-27 12:47:35]  *** Contents of shared directory: ***
[2025-11-27 12:47:35] total 1307472
[2025-11-27 12:47:35] -rw-r--r--. 2 boincer umatlas 410273957 Nov 27 00:01 ATLAS.root_0
[2025-11-27 12:47:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 12:47:35] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:01 input.tar.gz
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas 919681404 Nov 27 12:45 HITS.pool.root.1
[2025-11-27 12:47:35] -rw-------. 1 boincer umatlas   8273920 Nov 27 12:47 result.tar.gz
12:47:36 (3590171): run_atlas exited; CPU time 204407.152708
12:47:36 (3590171): called boinc_finish(0)

</stderr_txt>
]]>

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