Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:37 (863286): wrapper (7.7.26015): starting
00:01:37 (863286): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:37] Arguments: --nthreads 9
[2025-11-27 00:01:37] Threads: 9
[2025-11-27 00:01:37] Checking for CVMFS
[2025-11-27 00:01:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:40] 2.13.3.0 11048 31043 398964 153347 2 404 31716514 32935936 33990 16776704 0 90798368 99.428 132268444 37196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:40] CVMFS is ok
[2025-11-27 00:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:40] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:40] Checking for apptainer binary...
[2025-11-27 00:01:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:40] Running /usr/bin/apptainer --version
[2025-11-27 00:01:40] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:41] c6-1-24-2.aglt2.org
[2025-11-27 00:01:41] apptainer works
[2025-11-27 00:01:41] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:41] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:41] Starting ATLAS job with PandaID=6898120598
[2025-11-27 00:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:26:15]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:26:15] 2025-11-28 17:25:31,213 | INFO     | total number of processed events: 1000 (read)
[2025-11-28 12:26:15] 2025-11-28 17:25:31,224 | INFO     | executing command: lscpu
[2025-11-28 12:26:15] 2025-11-28 17:25:31,341 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-28 12:26:15] 2025-11-28 17:25:31,717 | INFO     | monitor loop #7045: job 0:6898120598 is in state 'finished'
[2025-11-28 12:26:15] 2025-11-28 17:25:31,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:26:15] 2025-11-28 17:25:32,248 | INFO     | time since job start (130959s) is within the limit (172800.0s)
[2025-11-28 12:26:15] 2025-11-28 17:25:34,222 | INFO     | monitor loop #7046: job 0:6898120598 is in state 'finished'
[2025-11-28 12:26:15] 2025-11-28 17:25:34,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:26:15] 2025-11-28 17:25:34,288 | INFO     | time since job start (130961s) is within the limit (172800.0s)
[2025-11-28 12:26:15] 2025-11-28 17:25:36,328 | INFO     | time since job start (130963s) is within the limit (172800.0s)
[2025-11-28 12:26:15] 2025-11-28 17:25:36,745 | INFO     | monitor loop #7047: job 0:6898120598 is in state 'finished'
[2025-11-28 12:26:15] 2025-11-28 17:25:36,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:26:15] 2025-11-28 17:25:39,362 | INFO     | monitor loop #7048: job 0:6898120598 is in state 'finished'
[2025-11-28 12:26:15] 2025-11-28 17:25:39,362 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:26:15] 2025-11-28 17:25:40,039 | INFO     | PID=879567 has CPU usage=14.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 12:26:15] 2025-11-28 17:25:40,039 | INFO     | .. there are 48 such processes running
[2025-11-28 12:26:15] 2025-11-28 17:25:40,901 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 12:26:15] 2025-11-28 17:25:40,907 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3073.7881607142854
[2025-11-28 12:26:15] 2025-11-28 17:25:40,922 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898120598/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:26:15] 2025-11-28 17:25:40,923 | INFO     | extracted standard info from prmon json
[2025-11-28 12:26:15] 2025-11-28 17:25:40,926 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:26:15] 2025-11-28 17:25:40,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:26:15] 2025-11-28 17:25:40,975 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:26:15] 2025-11-28 17:25:40,978 | INFO     | sum of square deviations: 3056402154735.25
[2025-11-28 12:26:15] 2025-11-28 17:25:41,052 | INFO     | time since job start (130968s) is within the limit (172800.0s)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,080 | INFO     | sum of deviations: 11846674207924.045
[2025-11-28 12:26:15] 2025-11-28 17:25:41,080 | INFO     | mean x: 1764285320.7686567
[2025-11-28 12:26:15] 2025-11-28 17:25:41,080 | INFO     | mean y: 3129379.6110074627
[2025-11-28 12:26:15] 2025-11-28 17:25:41,081 | INFO     | intersect: -6835274844.318586
[2025-11-28 12:26:15] 2025-11-28 17:25:41,089 | INFO     | chi2: 16.977261935061385
[2025-11-28 12:26:15] 2025-11-28 17:25:41,098 | INFO     | sum of square deviations: 3035074201873.9404
[2025-11-28 12:26:15] 2025-11-28 17:25:41,185 | INFO     | sum of deviations: 12677445459788.371
[2025-11-28 12:26:15] 2025-11-28 17:25:41,185 | INFO     | mean x: 1764285168.2786348
[2025-11-28 12:26:15] 2025-11-28 17:25:41,186 | INFO     | mean y: 3135319.271154745
[2025-11-28 12:26:15] 2025-11-28 17:25:41,186 | INFO     | intersect: -7366249252.13608
[2025-11-28 12:26:15] 2025-11-28 17:25:41,188 | INFO     | chi2: 13.428480283188422
[2025-11-28 12:26:15] 2025-11-28 17:25:41,188 | INFO     | current chi2=13.428480283188422 (change=20.903144838356006 %)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,188 | INFO     | right removable region: 2138
[2025-11-28 12:26:15] 2025-11-28 17:25:41,190 | INFO     | sum of square deviations: 3035068619153.939
[2025-11-28 12:26:15] 2025-11-28 17:25:41,292 | INFO     | sum of deviations: 10942838453039.562
[2025-11-28 12:26:15] 2025-11-28 17:25:41,293 | INFO     | mean x: 1764285473.2786348
[2025-11-28 12:26:15] 2025-11-28 17:25:41,293 | INFO     | mean y: 3135840.4805984106
[2025-11-28 12:26:15] 2025-11-28 17:25:41,293 | INFO     | intersect: -6357936458.607783
[2025-11-28 12:26:15] 2025-11-28 17:25:41,297 | INFO     | chi2: 13.147388319076969
[2025-11-28 12:26:15] 2025-11-28 17:25:41,297 | INFO     | current chi2=13.147388319076969 (change=22.558841529534124 %)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,297 | INFO     | left removable region: 10
[2025-11-28 12:26:15] 2025-11-28 17:25:41,301 | INFO     | sum of square deviations: 2988491288464.119
[2025-11-28 12:26:15] 2025-11-28 17:25:41,380 | INFO     | sum of deviations: 11263687712288.475
[2025-11-28 12:26:15] 2025-11-28 17:25:41,380 | INFO     | mean x: 1764285442.800282
[2025-11-28 12:26:15] 2025-11-28 17:25:41,380 | INFO     | mean y: 3148165.252819549
[2025-11-28 12:26:15] 2025-11-28 17:25:41,380 | INFO     | intersect: -6646481478.891803
[2025-11-28 12:26:15] 2025-11-28 17:25:41,383 | INFO     | chi2: 6.576900199319812
[2025-11-28 12:26:15] 2025-11-28 17:25:41,383 | INFO     | current memory leak: 3.77 B/s (using 2128 data points, chi2=6.58)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | could have reported an average CPU frequency of 3031 MHz (74 samples)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | ..............................
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | . Timing measurements:
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | . get job = 0 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | . initial setup = 5 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | . payload setup = 63 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | . stage-in = 0 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,386 | INFO     | . payload execution = 130790 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,387 | INFO     | . stage-out = 11 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,387 | INFO     | . log creation = 1 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,387 | INFO     | ..............................
[2025-11-28 12:26:15] 2025-11-28 17:25:41,609 | INFO     | 
[2025-11-28 12:26:15] 2025-11-28 17:25:41,610 | INFO     | job summary report
[2025-11-28 12:26:15] 2025-11-28 17:25:41,610 | INFO     | --------------------------------------------------
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | PanDA job id: 6898120598
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | task id: 47556173
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | errors: (none)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | pilot state: finished 
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | transexitcode: 0
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | exeerrorcode: 0
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | exeerrordiag: 
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | exitcode: 0
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | exitmsg: OK
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | cpuconsumptiontime: 241917 s
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | nevents: 1000
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | neventsw: 0
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | pid: 940287
[2025-11-28 12:26:15] 2025-11-28 17:25:41,611 | INFO     | pgrp: 940287
[2025-11-28 12:26:15] 2025-11-28 17:25:41,612 | INFO     | corecount: 9
[2025-11-28 12:26:15] 2025-11-28 17:25:41,612 | INFO     | event service: False
[2025-11-28 12:26:15] 2025-11-28 17:25:41,612 | INFO     | sizes: {0: 2283430, 1: 2284115, 2: 2284314, 3: 2284314, 14: 2284342, 24: 2284370, 35: 2284526, 37: 2284816, 47: 2284844, 130861: 2367479, 130862: 2367478, 130874: 
[2025-11-28 12:26:15] 2025-11-28 17:25:41,612 | INFO     | --------------------------------------------------
[2025-11-28 12:26:15] 2025-11-28 17:25:41,612 | INFO     | 
[2025-11-28 12:26:15] 2025-11-28 17:25:41,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-28 12:26:15] 2025-11-28 17:25:41,726 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,726 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,726 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,726 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,727 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,728 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:26:15] 2025-11-28 17:25:41,728 | INFO     | job 6898120598 has completed (purged errors)
[2025-11-28 12:26:15] 2025-11-28 17:25:41,728 | INFO     | overall cleanup function is called
[2025-11-28 12:26:15] 2025-11-28 17:25:43,117 | INFO     | --- collectZombieJob: --- 10, [940287]
[2025-11-28 12:26:15] 2025-11-28 17:25:43,118 | INFO     | zombie collector waiting for pid 940287
[2025-11-28 12:26:15] 2025-11-28 17:25:43,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:26:15] 2025-11-28 17:25:43,118 | INFO     | collected zombie processes
[2025-11-28 12:26:15] 2025-11-28 17:25:43,118 | INFO     | will attempt to kill all subprocesses of pid=940287
[2025-11-28 12:26:15] 2025-11-28 17:25:43,832 | INFO     | process IDs to be killed: [940287] (in reverse order)
[2025-11-28 12:26:15] 2025-11-28 17:25:44,004 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:26:15] 2025-11-28 17:25:44,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:26:15] 2025-11-28 17:25:44,032 | INFO     | did not find any defunct processes belonging to 940287
[2025-11-28 12:26:15] 2025-11-28 17:25:44,053 | INFO     | did not find any defunct processes belonging to 940287
[2025-11-28 12:26:15] 2025-11-28 17:25:44,055 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:26:15] 2025-11-28 17:25:44,055 | INFO     | ready for new job
[2025-11-28 12:26:15] 2025-11-28 17:25:44,055 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:26:15] 2025-11-28 17:25:44,108 | INFO     | ***************************************
[2025-11-28 12:26:15] 2025-11-28 17:25:44,108 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:26:15] 2025-11-28 17:25:44,109 | INFO     | ***************************************
[2025-11-28 12:26:15] 2025-11-28 17:25:44,109 | INFO     | 
[2025-11-28 12:26:15] 2025-11-28 17:25:44,113 | INFO     | architecture information:
[2025-11-28 12:26:15] 2025-11-28 17:25:44,113 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:26:15] 2025-11-28 17:25:44,132 | INFO     | cat /etc/os-release:
[2025-11-28 12:26:15] NAME="CentOS Linux"
[2025-11-28 12:26:15] VERSION="7 (Core)"
[2025-11-28 12:26:15] ID="centos"
[2025-11-28 12:26:15] ID_LIKE="rhel fedora"
[2025-11-28 12:26:15] VERSION_ID="7"
[2025-11-28 12:26:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:26:15] ANSI_COLOR="0;31"
[2025-11-28 12:26:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:26:15] HOME_URL="https://www.centos.org/"
[2025-11-28 12:26:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:26:15] 
[2025-11-28 12:26:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:26:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:26:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:26:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:26:15] 
[2025-11-28 12:26:15] 2025-11-28 17:25:44,134 | INFO     | ***************************************
[2025-11-28 12:26:15] 2025-11-28 17:25:44,637 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-28 12:26:15] 2025-11-28 17:25:44,670 | INFO     | sufficient remaining disk space (67935141888 B)
[2025-11-28 12:26:15] 2025-11-28 17:25:44,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:26:15] 2025-11-28 17:25:44,671 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:26:15] 2025-11-28 17:25:44,671 | INFO     | update_server=False
[2025-11-28 12:26:15] 2025-11-28 17:25:44,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:26:15] 2025-11-28 17:25:45,053 | INFO     | all data control threads have been joined
[2025-11-28 12:26:15] 2025-11-28 17:25:45,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:26:15] 2025-11-28 17:25:45,239 | INFO     | all job control threads have been joined
[2025-11-28 12:26:15] 2025-11-28 17:25:45,420 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:26:15] 2025-11-28 17:25:45,421 | INFO     | aborting loop
[2025-11-28 12:26:15] 2025-11-28 17:25:45,677 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:45,820 | INFO     | all payload control threads have been joined
[2025-11-28 12:26:15] 2025-11-28 17:25:45,836 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:45,992 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,082 | INFO     | [data] control thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,091 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:26:15] 2025-11-28 17:25:46,219 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,245 | INFO     | [job] control thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,426 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:26:15] 2025-11-28 17:25:46,546 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,663 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,735 | INFO     | [job] validate thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,826 | INFO     | [payload] control thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:46,972 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:47,115 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:47,511 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:25:50,130 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:26:15] 2025-11-28 17:26:03,532 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:26:15] 2025-11-28 17:26:05,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606093330240)>', '<ExcThread(monitor, started 140605569079040)>']
[2025-11-28 12:26:15] 2025-11-28 17:26:10,186 | INFO     | all workflow threads have been joined
[2025-11-28 12:26:15] 2025-11-28 17:26:10,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:26:15] 2025-11-28 17:26:10,187 | INFO     | traces error code: 0
[2025-11-28 12:26:15] 2025-11-28 17:26:10,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:26:15] 2025-11-28 17:26:14,896 | INFO     | PID=879567 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 12:26:15] 2025-11-28 17:26:14,897 | INFO     | .. there are 48 such processes running
[2025-11-28 12:26:15] 2025-11-28 17:26:14,897 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:26:15] 2025-11-28 17:26:14,897 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:26:15] 2025-11-28 17:26:14,897 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:26:15] 2025-11-28 17:26:14,897 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:26:15] 2025-11-28 17:26:14,898 | INFO     | [monitor] control thread has ended
[2025-11-28 12:26:15] 2025-11-28 17:26:15,172 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:26:15] 2025-11-28 17:26:15,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:26:15] 2025-11-28 17:26:15,186 [wrapper] pilotpid: 879567
[2025-11-28 12:26:15] 2025-11-28 17:26:15,194 [wrapper] Pilot exit status: 0
[2025-11-28 12:26:15] 2025-11-28 17:26:15,246 [wrapper] pandaids: 6898120598
[2025-11-28 12:26:15] 2025-11-28 17:26:15,498 [wrapper] cleanup supervisor_pilot 1553605 879569
[2025-11-28 12:26:15] 2025-11-28 17:26:15,501 [wrapper] Test setup, not cleaning
[2025-11-28 12:26:15] 2025-11-28 17:26:15,503 [wrapper] apfmon messages muted
[2025-11-28 12:26:15] 2025-11-28 17:26:15,505 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:26:15] 2025-11-28 17:26:15,507 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:26:15]  *** Error codes and diagnostics ***
[2025-11-28 12:26:15]     "exeErrorCode": 0,
[2025-11-28 12:26:15]     "exeErrorDiag": "",
[2025-11-28 12:26:15]     "pilotErrorCode": 0,
[2025-11-28 12:26:15]     "pilotErrorDiag": "",
[2025-11-28 12:26:15]  *** Listing of results directory ***
[2025-11-28 12:26:15] total 1328436
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 12:26:15] -rwx------. 1 boincer umatlas     36292 Nov 25 22:36 runpilot2-wrapper.sh
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:36 queuedata.json
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:26:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-28 12:26:15] -rw-r--r--. 2 boincer umatlas 410468502 Nov 27 00:01 EVNT.47483658._003165.pool.root.1
[2025-11-28 12:26:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-28 12:26:15] -rw-r--r--. 2 boincer umatlas    590097 Nov 27 00:01 input.tar.gz
[2025-11-28 12:26:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 00:01 pandaJob.out
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-28 12:26:15] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas       533 Nov 28 11:50 boinc_task_state.xml
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas      6845 Nov 28 12:22 init_data.xml
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas 909075066 Nov 28 12:24 HITS.47556173._001211.pool.root.1
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas      1059 Nov 28 12:25 memory_monitor_summary.json
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas   1516240 Nov 28 12:25 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas   3007481 Nov 28 12:25 log.47556173._001211.job.log.tgz.1
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas        95 Nov 28 12:25 pilot_heartbeat.json
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas      8618 Nov 28 12:25 heartbeat.json
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas        29 Nov 28 12:26 wrapper_checkpoint.txt
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas       822 Nov 28 12:26 pilotlog.txt
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 12:26 boinc_mmap_file
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas  15419634 Nov 28 12:26 log.47556173._001211.job.log.1
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas       353 Nov 28 12:26 output.list
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas       620 Nov 28 12:26 runtime_log
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas  18442240 Nov 28 12:26 result.tar.gz
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas       664 Nov 28 12:26 VPWNDmwVLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfqMKDmPhygun.diag
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas      9349 Nov 28 12:26 runtime_log.err
[2025-11-28 12:26:15] -rw-r--r--. 1 boincer umatlas     21680 Nov 28 12:26 stderr.txt
[2025-11-28 12:26:15] HITS file was successfully produced:
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas 909075066 Nov 28 12:24 shared/HITS.pool.root.1
[2025-11-28 12:26:15]  *** Contents of shared directory: ***
[2025-11-28 12:26:15] total 1307240
[2025-11-28 12:26:15] -rw-r--r--. 2 boincer umatlas 410468502 Nov 27 00:01 ATLAS.root_0
[2025-11-28 12:26:15] -rw-r--r--. 2 boincer umatlas    590097 Nov 27 00:01 input.tar.gz
[2025-11-28 12:26:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas 909075066 Nov 28 12:24 HITS.pool.root.1
[2025-11-28 12:26:15] -rw-------. 1 boincer umatlas  18442240 Nov 28 12:26 result.tar.gz
12:26:16 (863286): run_atlas exited; CPU time 245670.688118
12:26:16 (863286): called boinc_finish(0)

</stderr_txt>
]]>

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