Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:51 (2141499): wrapper (7.7.26015): starting
00:00:51 (2141499): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:00:51] Arguments: --nthreads 12
[2025-11-27 00:00:51] Threads: 12
[2025-11-27 00:00:51] Checking for CVMFS
[2025-11-27 00:00:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:53] 2.13.2.0 12166 36834 283516 153347 0 135 25106128 40960001 23740 16776704 0 68963656 99.729 41685873 33167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:00:53] CVMFS is ok
[2025-11-27 00:00:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:53] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:53] Checking for apptainer binary...
[2025-11-27 00:00:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:53] Running /usr/bin/apptainer --version
[2025-11-27 00:00:53] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:54] c-211-33-1.aglt2.org
[2025-11-27 00:00:54] apptainer works
[2025-11-27 00:00:54] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:00:54] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:00:54] Starting ATLAS job with PandaID=6898175901
[2025-11-27 00:00:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:45:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:45:25] 2025-11-28 02:44:24,841 | INFO     | monitor loop #4413: job 0:6898175901 is in state 'finished'
[2025-11-27 21:45:25] 2025-11-28 02:44:24,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:25] 2025-11-28 02:44:25,725 | INFO     | time since job start (78151s) is within the limit (172800.0s)
[2025-11-27 21:45:25] 2025-11-28 02:44:27,393 | INFO     | monitor loop #4414: job 0:6898175901 is in state 'finished'
[2025-11-27 21:45:25] 2025-11-28 02:44:27,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:25] 2025-11-28 02:44:29,224 | INFO     | PID=2148196 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:45:25] 2025-11-28 02:44:29,224 | INFO     | .. there are 18 such processes running
[2025-11-27 21:45:25] 2025-11-28 02:44:29,992 | INFO     | monitor loop #4415: job 0:6898175901 is in state 'finished'
[2025-11-27 21:45:25] 2025-11-28 02:44:29,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:25] 2025-11-28 02:44:30,226 | INFO     | time since job start (78156s) is within the limit (172800.0s)
[2025-11-27 21:45:25] 2025-11-28 02:44:32,237 | INFO     | time since job start (78158s) is within the limit (172800.0s)
[2025-11-27 21:45:25] 2025-11-28 02:44:32,497 | INFO     | monitor loop #4416: job 0:6898175901 is in state 'finished'
[2025-11-27 21:45:25] 2025-11-28 02:44:32,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:25] 2025-11-28 02:44:34,244 | INFO     | time since job start (78160s) is within the limit (172800.0s)
[2025-11-27 21:45:25] 2025-11-28 02:44:34,532 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:45:25] 2025-11-28 02:44:34,622 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2515.9039895833334
[2025-11-27 21:45:25] 2025-11-28 02:44:34,727 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898175901/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:45:25] 2025-11-28 02:44:34,728 | INFO     | extracted standard info from prmon json
[2025-11-27 21:45:25] 2025-11-28 02:44:34,728 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:45:25] 2025-11-28 02:44:34,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:45:25] 2025-11-28 02:44:34,908 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:45:25] 2025-11-28 02:44:34,910 | INFO     | sum of square deviations: 648624255264.3701
[2025-11-27 21:45:25] 2025-11-28 02:44:35,054 | INFO     | monitor loop #4417: job 0:6898175901 is in state 'finished'
[2025-11-27 21:45:25] 2025-11-28 02:44:35,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:45:25] 2025-11-28 02:44:35,156 | INFO     | sum of deviations: 3734489869759.519
[2025-11-27 21:45:25] 2025-11-28 02:44:35,157 | INFO     | mean x: 1764258831.7427678
[2025-11-27 21:45:25] 2025-11-28 02:44:35,157 | INFO     | mean y: 3444839.001563722
[2025-11-27 21:45:25] 2025-11-28 02:44:35,157 | INFO     | intersect: -10154372543.40839
[2025-11-27 21:45:25] 2025-11-28 02:44:35,184 | INFO     | chi2: 25.353648100745
[2025-11-27 21:45:25] 2025-11-28 02:44:35,186 | INFO     | sum of square deviations: 641047887438.6554
[2025-11-27 21:45:25] 2025-11-28 02:44:35,404 | INFO     | sum of deviations: 4297637378040.411
[2025-11-27 21:45:25] 2025-11-28 02:44:35,404 | INFO     | mean x: 1764258679.2692308
[2025-11-27 21:45:25] 2025-11-28 02:44:35,429 | INFO     | mean y: 3456169.9725274723
[2025-11-27 21:45:25] 2025-11-28 02:44:35,429 | INFO     | intersect: -11824278065.069662
[2025-11-27 21:45:25] 2025-11-28 02:44:35,431 | INFO     | chi2: 21.29847859360528
[2025-11-27 21:45:25] 2025-11-28 02:44:35,431 | INFO     | current chi2=21.29847859360528 (change=15.99442214795338 %)
[2025-11-27 21:45:25] 2025-11-28 02:44:35,431 | INFO     | right removable region: 1273
[2025-11-27 21:45:25] 2025-11-28 02:44:35,454 | INFO     | sum of square deviations: 641040675859.7012
[2025-11-27 21:45:25] 2025-11-28 02:44:35,689 | INFO     | sum of deviations: 3127451591202.6055
[2025-11-27 21:45:25] 2025-11-28 02:44:35,689 | INFO     | mean x: 1764258984.2888541
[2025-11-27 21:45:25] 2025-11-28 02:44:35,689 | INFO     | mean y: 3457048.381475667
[2025-11-27 21:45:25] 2025-11-28 02:44:35,690 | INFO     | intersect: -8603850998.503313
[2025-11-27 21:45:25] 2025-11-28 02:44:35,691 | INFO     | chi2: 21.46833355105829
[2025-11-27 21:45:25] 2025-11-28 02:44:35,691 | INFO     | current chi2=21.46833355105829 (change=15.324479279068893 %)
[2025-11-27 21:45:25] 2025-11-28 02:44:35,713 | INFO     | left removable region: 10
[2025-11-27 21:45:25] 2025-11-28 02:44:35,715 | INFO     | sum of square deviations: 624573884530.3871
[2025-11-27 21:45:25] 2025-11-28 02:44:35,929 | INFO     | sum of deviations: 3413300627642.8438
[2025-11-27 21:45:25] 2025-11-28 02:44:35,929 | INFO     | mean x: 1764258953.8661916
[2025-11-27 21:45:25] 2025-11-28 02:44:35,932 | INFO     | mean y: 3478344.064133017
[2025-11-27 21:45:25] 2025-11-28 02:44:35,933 | INFO     | intersect: -9638209122.717863
[2025-11-27 21:45:25] 2025-11-28 02:44:35,935 | INFO     | chi2: 15.215636048419961
[2025-11-27 21:45:25] 2025-11-28 02:44:35,935 | INFO     | current memory leak: 5.47 B/s (using 1263 data points, chi2=15.22)
[2025-11-27 21:45:25] 2025-11-28 02:44:35,954 | INFO     | could have reported an average CPU frequency of 2549 MHz (46 samples)
[2025-11-27 21:45:25] 2025-11-28 02:44:35,954 | INFO     | ..............................
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . Timing measurements:
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . get job = 0 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . initial setup = 4 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . payload setup = 39 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . stage-in = 0 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . payload execution = 77996 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . stage-out = 15 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | . log creation = 5 s
[2025-11-27 21:45:25] 2025-11-28 02:44:35,955 | INFO     | ..............................
[2025-11-27 21:45:25] 2025-11-28 02:44:36,285 | INFO     | time since job start (78162s) is within the limit (172800.0s)
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | 
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | job summary report
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | --------------------------------------------------
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | PanDA job id: 6898175901
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | task id: 47556173
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | errors: (none)
[2025-11-27 21:45:25] 2025-11-28 02:44:36,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | pilot state: finished 
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | transexitcode: 0
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | exeerrorcode: 0
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | exeerrordiag: 
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | exitcode: 0
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | exitmsg: OK
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | cpuconsumptiontime: 295182 s
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | nevents: 1000
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | neventsw: 0
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | pid: 2167902
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | pgrp: 2167902
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | corecount: 12
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | event service: False
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 27: 2284610, 34: 2284638, 78041: 2344877, 78043: 2344876, 78058: 2353926, 78061: 2353982, 78101: 2354228}
[2025-11-27 21:45:25] 2025-11-28 02:44:36,630 | INFO     | --------------------------------------------------
[2025-11-27 21:45:25] 2025-11-28 02:44:36,631 | INFO     | 
[2025-11-27 21:45:25] 2025-11-28 02:44:36,631 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 21:45:25] 2025-11-28 02:44:36,801 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,801 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,801 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,802 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | job 6898175901 has completed (purged errors)
[2025-11-27 21:45:25] 2025-11-28 02:44:36,803 | INFO     | overall cleanup function is called
[2025-11-27 21:45:25] 2025-11-28 02:44:37,927 | INFO     | --- collectZombieJob: --- 10, [2167902]
[2025-11-27 21:45:25] 2025-11-28 02:44:37,927 | INFO     | zombie collector waiting for pid 2167902
[2025-11-27 21:45:25] 2025-11-28 02:44:37,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:45:25] 2025-11-28 02:44:37,927 | INFO     | collected zombie processes
[2025-11-27 21:45:25] 2025-11-28 02:44:37,927 | INFO     | will attempt to kill all subprocesses of pid=2167902
[2025-11-27 21:45:25] 2025-11-28 02:44:40,259 | INFO     | process IDs to be killed: [2167902] (in reverse order)
[2025-11-27 21:45:25] 2025-11-28 02:44:40,450 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:45:25] 2025-11-28 02:44:40,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:45:25] 2025-11-28 02:44:40,467 | INFO     | did not find any defunct processes belonging to 2167902
[2025-11-27 21:45:25] 2025-11-28 02:44:40,483 | INFO     | did not find any defunct processes belonging to 2167902
[2025-11-27 21:45:25] 2025-11-28 02:44:40,488 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:45:25] 2025-11-28 02:44:40,488 | INFO     | ready for new job
[2025-11-27 21:45:25] 2025-11-28 02:44:40,489 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:45:25] 2025-11-28 02:44:40,497 | INFO     | ***************************************
[2025-11-27 21:45:25] 2025-11-28 02:44:40,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:45:25] 2025-11-28 02:44:40,497 | INFO     | ***************************************
[2025-11-27 21:45:25] 2025-11-28 02:44:40,497 | INFO     | 
[2025-11-27 21:45:25] 2025-11-28 02:44:40,503 | INFO     | architecture information:
[2025-11-27 21:45:25] 2025-11-28 02:44:40,508 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:45:25] 2025-11-28 02:44:40,532 | INFO     | cat /etc/os-release:
[2025-11-27 21:45:25] NAME="CentOS Linux"
[2025-11-27 21:45:25] VERSION="7 (Core)"
[2025-11-27 21:45:25] ID="centos"
[2025-11-27 21:45:25] ID_LIKE="rhel fedora"
[2025-11-27 21:45:25] VERSION_ID="7"
[2025-11-27 21:45:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:45:25] ANSI_COLOR="0;31"
[2025-11-27 21:45:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:45:25] HOME_URL="https://www.centos.org/"
[2025-11-27 21:45:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:45:25] 
[2025-11-27 21:45:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:45:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:45:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:45:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:45:25] 
[2025-11-27 21:45:25] 2025-11-28 02:44:40,532 | INFO     | ***************************************
[2025-11-27 21:45:25] 2025-11-28 02:44:41,036 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 21:45:25] 2025-11-28 02:44:41,094 | INFO     | sufficient remaining disk space (121659981824 B)
[2025-11-27 21:45:25] 2025-11-28 02:44:41,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:45:25] 2025-11-28 02:44:41,095 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:45:25] 2025-11-28 02:44:41,095 | INFO     | update_server=False
[2025-11-27 21:45:25] 2025-11-28 02:44:41,095 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:45:25] 2025-11-28 02:44:41,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:45:25] 2025-11-28 02:44:41,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:45:25] 2025-11-28 02:44:41,136 | INFO     | aborting loop
[2025-11-27 21:45:25] 2025-11-28 02:44:41,555 | INFO     | all data control threads have been joined
[2025-11-27 21:45:25] 2025-11-28 02:44:41,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:45:25] 2025-11-28 02:44:41,819 | INFO     | all payload control threads have been joined
[2025-11-27 21:45:25] 2025-11-28 02:44:42,101 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,142 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,562 | INFO     | [data] control thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,569 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,576 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,592 | INFO     | all job control threads have been joined
[2025-11-27 21:45:25] 2025-11-28 02:44:42,600 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,671 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,825 | INFO     | [payload] control thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:42,940 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,103 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,400 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,547 | INFO     | [job] validate thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,547 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,598 | INFO     | [job] control thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,673 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:44:43,824 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:45:25] 2025-11-28 02:44:47,833 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:45:25] 2025-11-28 02:45:11,640 | INFO     | PID=2148196 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:45:25] 2025-11-28 02:45:11,640 | INFO     | .. there are 18 such processes running
[2025-11-27 21:45:25] 2025-11-28 02:45:11,641 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:45:25] 2025-11-28 02:45:11,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:45:25] 2025-11-28 02:45:11,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:45:25] 2025-11-28 02:45:16,311 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:45:25] 2025-11-28 02:45:17,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152456943424)>', '<ExcThread(monitor, started 140151804118784)>']
[2025-11-27 21:45:25] 2025-11-28 02:45:18,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:45:25] 2025-11-28 02:45:18,688 | INFO     | [monitor] control thread has ended
[2025-11-27 21:45:25] 2025-11-28 02:45:22,895 | INFO     | all workflow threads have been joined
[2025-11-27 21:45:25] 2025-11-28 02:45:22,895 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:45:25] 2025-11-28 02:45:22,895 | INFO     | traces error code: 0
[2025-11-27 21:45:25] 2025-11-28 02:45:22,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:45:25] 2025-11-28 02:45:23,912 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:45:25] 2025-11-28 02:45:23,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:45:25] 2025-11-28 02:45:23,942 [wrapper] pilotpid: 2148196
[2025-11-27 21:45:25] 2025-11-28 02:45:23,956 [wrapper] Pilot exit status: 0
[2025-11-27 21:45:25] 2025-11-28 02:45:24,082 [wrapper] pandaids: 6898175901
[2025-11-27 21:45:25] 2025-11-28 02:45:24,590 [wrapper] cleanup supervisor_pilot  525474 2148197
[2025-11-27 21:45:25] 2025-11-28 02:45:24,602 [wrapper] Test setup, not cleaning
[2025-11-27 21:45:25] 2025-11-28 02:45:24,638 [wrapper] apfmon messages muted
[2025-11-27 21:45:25] 2025-11-28 02:45:24,683 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:45:25] 2025-11-28 02:45:24,704 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:45:25]  *** Error codes and diagnostics ***
[2025-11-27 21:45:25]     "exeErrorCode": 0,
[2025-11-27 21:45:25]     "exeErrorDiag": "",
[2025-11-27 21:45:25]     "pilotErrorCode": 0,
[2025-11-27 21:45:25]     "pilotErrorDiag": "",
[2025-11-27 21:45:25]  *** Listing of results directory ***
[2025-11-27 21:45:25] total 1328080
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 21:45:25] -rwx------. 1 boincer umatlas     36292 Nov 25 22:58 runpilot2-wrapper.sh
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:45:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-27 21:45:25] -rw-r--r--. 2 boincer umatlas 413314743 Nov 27 00:00 EVNT.47483658._003168.pool.root.1
[2025-11-27 21:45:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 21:45:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-27 21:45:25] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:00 input.tar.gz
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:00 pandaJob.out
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 21:45:25] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas       532 Nov 27 21:01 boinc_task_state.xml
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas 918187188 Nov 27 21:41 HITS.47556173._001247.pool.root.1
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas      1062 Nov 27 21:43 memory_monitor_summary.json
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas   2759446 Nov 27 21:43 log.47556173._001247.job.log.tgz.1
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas        95 Nov 27 21:44 pilot_heartbeat.json
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas      8631 Nov 27 21:44 heartbeat.json
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 21:45 init_data.xml
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas      4825 Nov 27 21:45 pilotlog.txt
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas   9505603 Nov 27 21:45 log.47556173._001247.job.log.1
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas       353 Nov 27 21:45 output.list
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:45 runtime_log
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas  12288000 Nov 27 21:45 result.tar.gz
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:45 boinc_mmap_file
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 21:45 runtime_log.err
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas       662 Nov 27 21:45 0CCMDmlqLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8sJKDmlB3PSn.diag
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:45 wrapper_checkpoint.txt
[2025-11-27 21:45:25] -rw-r--r--. 1 boincer umatlas     21901 Nov 27 21:45 stderr.txt
[2025-11-27 21:45:25] HITS file was successfully produced:
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas 918187188 Nov 27 21:41 shared/HITS.pool.root.1
[2025-11-27 21:45:25]  *** Contents of shared directory: ***
[2025-11-27 21:45:25] total 1312900
[2025-11-27 21:45:25] -rw-r--r--. 2 boincer umatlas 413314743 Nov 27 00:00 ATLAS.root_0
[2025-11-27 21:45:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 21:45:25] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:00 input.tar.gz
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas 918187188 Nov 27 21:41 HITS.pool.root.1
[2025-11-27 21:45:25] -rw-------. 1 boincer umatlas  12288000 Nov 27 21:45 result.tar.gz
21:45:27 (2141499): run_atlas exited; CPU time 297009.431081
21:45:27 (2141499): called boinc_finish(0)

</stderr_txt>
]]>

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