Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:54 (3729587): wrapper (7.7.26015): starting
00:01:54 (3729587): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:54] Arguments: --nthreads 9
[2025-11-27 00:01:54] Threads: 9
[2025-11-27 00:01:54] Checking for CVMFS
[2025-11-27 00:01:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:56] 2.13.3.0 11883 30909 364612 153347 3 238 24246472 32935936 47089 16776704 0 163477309 99.605 178068590 34147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:56] CVMFS is ok
[2025-11-27 00:01:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:56] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:56] Checking for apptainer binary...
[2025-11-27 00:01:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:56] Running /usr/bin/apptainer --version
[2025-11-27 00:01:56] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:57] c6-12-29-2.aglt2.org
[2025-11-27 00:01:57] apptainer works
[2025-11-27 00:01:57] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:57] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:57] Starting ATLAS job with PandaID=6898177046
[2025-11-27 00:01:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:36:59]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:36:59] 2025-11-28 05:35:38,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:36:59] 2025-11-28 05:35:39,469 | INFO     | time since job start (88351s) is within the limit (172800.0s)
[2025-11-28 00:36:59] 2025-11-28 05:35:40,639 | INFO     | monitor loop #4553: job 0:6898177046 is in state 'finished'
[2025-11-28 00:36:59] 2025-11-28 05:35:40,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:36:59] 2025-11-28 05:35:41,475 | INFO     | time since job start (88353s) is within the limit (172800.0s)
[2025-11-28 00:36:59] 2025-11-28 05:35:43,165 | INFO     | monitor loop #4554: job 0:6898177046 is in state 'finished'
[2025-11-28 00:36:59] 2025-11-28 05:35:43,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:36:59] 2025-11-28 05:35:43,482 | INFO     | time since job start (88355s) is within the limit (172800.0s)
[2025-11-28 00:36:59] 2025-11-28 05:35:45,501 | INFO     | time since job start (88357s) is within the limit (172800.0s)
[2025-11-28 00:36:59] 2025-11-28 05:35:45,670 | INFO     | monitor loop #4555: job 0:6898177046 is in state 'finished'
[2025-11-28 00:36:59] 2025-11-28 05:35:45,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:36:59] 2025-11-28 05:35:47,511 | INFO     | time since job start (88359s) is within the limit (172800.0s)
[2025-11-28 00:36:59] 2025-11-28 05:35:47,518 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 00:36:59] 2025-11-28 05:35:47,555 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2628.32096875
[2025-11-28 00:36:59] 2025-11-28 05:35:47,739 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6898177046/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:36:59] 2025-11-28 05:35:47,740 | INFO     | extracted standard info from prmon json
[2025-11-28 00:36:59] 2025-11-28 05:35:47,740 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:36:59] 2025-11-28 05:35:47,740 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:36:59] 2025-11-28 05:35:47,903 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:36:59] 2025-11-28 05:35:47,939 | INFO     | sum of square deviations: 935550410724.7998
[2025-11-28 00:36:59] 2025-11-28 05:35:48,269 | INFO     | sum of deviations: 4860340587951.853
[2025-11-28 00:36:59] 2025-11-28 05:35:48,269 | INFO     | mean x: 1764264007.1058824
[2025-11-28 00:36:59] 2025-11-28 05:35:48,269 | INFO     | mean y: 3047853.9944636677
[2025-11-28 00:36:59] 2025-11-28 05:35:48,297 | INFO     | intersect: -9162598233.377823
[2025-11-28 00:36:59] 2025-11-28 05:35:48,299 | INFO     | chi2: 23.7816903328828
[2025-11-28 00:36:59] 2025-11-28 05:35:48,297 | INFO     | monitor loop #4556: job 0:6898177046 is in state 'finished'
[2025-11-28 00:36:59] 2025-11-28 05:35:48,320 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:36:59] 2025-11-28 05:35:48,324 | INFO     | sum of square deviations: 925873421306.401
[2025-11-28 00:36:59] 2025-11-28 05:35:48,607 | INFO     | sum of deviations: 5417562091886.969
[2025-11-28 00:36:59] 2025-11-28 05:35:48,607 | INFO     | mean x: 1764263854.6166666
[2025-11-28 00:36:59] 2025-11-28 05:35:48,607 | INFO     | mean y: 3056633.175694444
[2025-11-28 00:36:59] 2025-11-28 05:35:48,607 | INFO     | intersect: -10320178442.922884
[2025-11-28 00:36:59] 2025-11-28 05:35:48,609 | INFO     | chi2: 19.92266277280446
[2025-11-28 00:36:59] 2025-11-28 05:35:48,609 | INFO     | current chi2=19.92266277280446 (change=16.226885078654334 %)
[2025-11-28 00:36:59] 2025-11-28 05:35:48,609 | INFO     | right removable region: 1439
[2025-11-28 00:36:59] 2025-11-28 05:35:48,619 | INFO     | sum of square deviations: 925870683626.3993
[2025-11-28 00:36:59] 2025-11-28 05:35:48,750 | INFO     | sum of deviations: 4267363738968.628
[2025-11-28 00:36:59] 2025-11-28 05:35:48,750 | INFO     | mean x: 1764264159.6166666
[2025-11-28 00:36:59] 2025-11-28 05:35:48,750 | INFO     | mean y: 3057195.1569444444
[2025-11-28 00:36:59] 2025-11-28 05:35:48,750 | INFO     | intersect: -8128485399.130524
[2025-11-28 00:36:59] 2025-11-28 05:35:48,752 | INFO     | chi2: 19.99855038340837
[2025-11-28 00:36:59] 2025-11-28 05:35:48,761 | INFO     | current chi2=19.99855038340837 (change=15.9077840831335 %)
[2025-11-28 00:36:59] 2025-11-28 05:35:48,761 | INFO     | left removable region: 10
[2025-11-28 00:36:59] 2025-11-28 05:35:48,763 | INFO     | sum of square deviations: 904814004347.2872
[2025-11-28 00:36:59] 2025-11-28 05:35:49,249 | INFO     | sum of deviations: 4406984543361.158
[2025-11-28 00:36:59] 2025-11-28 05:35:49,322 | INFO     | mean x: 1764264129.1392581
[2025-11-28 00:36:59] 2025-11-28 05:35:49,322 | INFO     | mean y: 3075985.2505248426
[2025-11-28 00:36:59] 2025-11-28 05:35:49,322 | INFO     | intersect: -8589943917.366941
[2025-11-28 00:36:59] 2025-11-28 05:35:49,342 | INFO     | chi2: 12.590008265975884
[2025-11-28 00:36:59] 2025-11-28 05:35:49,343 | INFO     | current memory leak: 4.87 B/s (using 1429 data points, chi2=12.59)
[2025-11-28 00:36:59] 2025-11-28 05:35:49,345 | INFO     | could have reported an average CPU frequency of 2644 MHz (51 samples)
[2025-11-28 00:36:59] 2025-11-28 05:35:49,345 | INFO     | ..............................
[2025-11-28 00:36:59] 2025-11-28 05:35:49,345 | INFO     | . Timing measurements:
[2025-11-28 00:36:59] 2025-11-28 05:35:49,345 | INFO     | . get job = 0 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,345 | INFO     | . initial setup = 7 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,403 | INFO     | . payload setup = 63 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,403 | INFO     | . stage-in = 0 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,403 | INFO     | . payload execution = 88157 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,403 | INFO     | . stage-out = 20 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,403 | INFO     | . log creation = 8 s
[2025-11-28 00:36:59] 2025-11-28 05:35:49,403 | INFO     | ..............................
[2025-11-28 00:36:59] 2025-11-28 05:35:49,600 | INFO     | time since job start (88361s) is within the limit (172800.0s)
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | 
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | job summary report
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | --------------------------------------------------
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | PanDA job id: 6898177046
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | task id: 47556173
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | errors: (none)
[2025-11-28 00:36:59] 2025-11-28 05:35:50,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | pilot state: finished 
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | transexitcode: 0
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | exeerrorcode: 0
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | exeerrordiag: 
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | exitcode: 0
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | exitmsg: OK
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | cpuconsumptiontime: 278681 s
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | nevents: 1000
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | neventsw: 0
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | pid: 3787717
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | pgrp: 3787717
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | corecount: 9
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | event service: False
[2025-11-28 00:36:59] 2025-11-28 05:35:50,221 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 3: 2284320, 14: 2284348, 25: 2284376, 34: 2284794, 37: 2284822, 88225: 2349015, 88226: 2349014, 88248: 2358064, 88251: 
[2025-11-28 00:36:59] 2025-11-28 05:35:50,222 | INFO     | --------------------------------------------------
[2025-11-28 00:36:59] 2025-11-28 05:35:50,222 | INFO     | 
[2025-11-28 00:36:59] 2025-11-28 05:35:50,222 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,367 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,368 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:36:59] 2025-11-28 05:35:50,369 | INFO     | job 6898177046 has completed (purged errors)
[2025-11-28 00:36:59] 2025-11-28 05:35:50,369 | INFO     | overall cleanup function is called
[2025-11-28 00:36:59] 2025-11-28 05:35:51,485 | INFO     | --- collectZombieJob: --- 10, [3787717]
[2025-11-28 00:36:59] 2025-11-28 05:35:51,485 | INFO     | zombie collector waiting for pid 3787717
[2025-11-28 00:36:59] 2025-11-28 05:35:51,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:36:59] 2025-11-28 05:35:51,485 | INFO     | collected zombie processes
[2025-11-28 00:36:59] 2025-11-28 05:35:51,485 | INFO     | will attempt to kill all subprocesses of pid=3787717
[2025-11-28 00:36:59] 2025-11-28 05:35:55,633 | INFO     | process IDs to be killed: [3787717] (in reverse order)
[2025-11-28 00:36:59] 2025-11-28 05:35:56,213 | INFO     | PID=3741247 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:36:59] 2025-11-28 05:35:56,259 | INFO     | .. there are 63 such processes running
[2025-11-28 00:36:59] 2025-11-28 05:35:56,388 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:36:59] 2025-11-28 05:35:56,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:36:59] 2025-11-28 05:35:56,465 | INFO     | did not find any defunct processes belonging to 3787717
[2025-11-28 00:36:59] 2025-11-28 05:35:56,685 | INFO     | did not find any defunct processes belonging to 3787717
[2025-11-28 00:36:59] 2025-11-28 05:35:56,731 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:36:59] 2025-11-28 05:35:56,732 | INFO     | ready for new job
[2025-11-28 00:36:59] 2025-11-28 05:35:56,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:36:59] 2025-11-28 05:35:56,751 | INFO     | ***************************************
[2025-11-28 00:36:59] 2025-11-28 05:35:56,752 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:36:59] 2025-11-28 05:35:56,752 | INFO     | ***************************************
[2025-11-28 00:36:59] 2025-11-28 05:35:56,752 | INFO     | 
[2025-11-28 00:36:59] 2025-11-28 05:35:56,806 | INFO     | architecture information:
[2025-11-28 00:36:59] 2025-11-28 05:35:56,824 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:36:59] 2025-11-28 05:35:56,913 | INFO     | cat /etc/os-release:
[2025-11-28 00:36:59] NAME="CentOS Linux"
[2025-11-28 00:36:59] VERSION="7 (Core)"
[2025-11-28 00:36:59] ID="centos"
[2025-11-28 00:36:59] ID_LIKE="rhel fedora"
[2025-11-28 00:36:59] VERSION_ID="7"
[2025-11-28 00:36:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:36:59] ANSI_COLOR="0;31"
[2025-11-28 00:36:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:36:59] HOME_URL="https://www.centos.org/"
[2025-11-28 00:36:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:36:59] 
[2025-11-28 00:36:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:36:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:36:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:36:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:36:59] 
[2025-11-28 00:36:59] 2025-11-28 05:35:56,915 | INFO     | ***************************************
[2025-11-28 00:36:59] 2025-11-28 05:35:57,425 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-28 00:36:59] 2025-11-28 05:35:57,867 | INFO     | sufficient remaining disk space (85888860160 B)
[2025-11-28 00:36:59] 2025-11-28 05:35:57,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:36:59] 2025-11-28 05:35:57,868 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:36:59] 2025-11-28 05:35:57,868 | INFO     | update_server=False
[2025-11-28 00:36:59] 2025-11-28 05:35:57,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:36:59] 2025-11-28 05:35:57,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:36:59] 2025-11-28 05:35:57,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:36:59] 2025-11-28 05:35:57,869 | INFO     | aborting loop
[2025-11-28 00:36:59] 2025-11-28 05:35:58,109 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:36:59] 2025-11-28 05:35:58,298 | INFO     | all payload control threads have been joined
[2025-11-28 00:36:59] 2025-11-28 05:35:58,532 | INFO     | all data control threads have been joined
[2025-11-28 00:36:59] 2025-11-28 05:35:58,874 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:58,875 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:58,910 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,241 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,259 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,259 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,304 | INFO     | [payload] control thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:36:59] 2025-11-28 05:35:59,492 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,492 | INFO     | [job] validate thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,505 | INFO     | all job control threads have been joined
[2025-11-28 00:36:59] 2025-11-28 05:35:59,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:35:59,541 | INFO     | [data] control thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:36:00,131 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:36:00,406 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:36:00,411 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:36:00,519 | INFO     | [job] control thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:36:01,881 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:36:59] 2025-11-28 05:36:34,546 | INFO     | PID=3741247 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:36:59] 2025-11-28 05:36:34,546 | INFO     | .. there are 63 such processes running
[2025-11-28 00:36:59] 2025-11-28 05:36:34,546 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:36:59] 2025-11-28 05:36:34,546 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:36:59] 2025-11-28 05:36:34,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:36:59] 2025-11-28 05:36:51,882 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:36:59] 2025-11-28 05:36:52,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927886337856)>', '<ExcThread(monitor, started 139927392077568)>']
[2025-11-28 00:36:59] 2025-11-28 05:36:52,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:36:59] 2025-11-28 05:36:52,715 | INFO     | [monitor] control thread has ended
[2025-11-28 00:36:59] 2025-11-28 05:36:57,163 | INFO     | all workflow threads have been joined
[2025-11-28 00:36:59] 2025-11-28 05:36:57,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:36:59] 2025-11-28 05:36:57,163 | INFO     | traces error code: 0
[2025-11-28 00:36:59] 2025-11-28 05:36:57,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:36:59] 2025-11-28 05:36:57,705 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:36:59] 2025-11-28 05:36:57,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:36:59] 2025-11-28 05:36:57,746 [wrapper] pilotpid: 3741247
[2025-11-28 00:36:59] 2025-11-28 05:36:57,771 [wrapper] Pilot exit status: 0
[2025-11-28 00:36:59] 2025-11-28 05:36:57,855 [wrapper] pandaids: 6898177046
[2025-11-28 00:36:59] 2025-11-28 05:36:58,273 [wrapper] cleanup supervisor_pilot 1189375 3741248
[2025-11-28 00:36:59] 2025-11-28 05:36:58,290 [wrapper] Test setup, not cleaning
[2025-11-28 00:36:59] 2025-11-28 05:36:58,306 [wrapper] apfmon messages muted
[2025-11-28 00:36:59] 2025-11-28 05:36:58,369 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:36:59] 2025-11-28 05:36:58,407 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:36:59]  *** Error codes and diagnostics ***
[2025-11-28 00:36:59]     "exeErrorCode": 0,
[2025-11-28 00:36:59]     "exeErrorDiag": "",
[2025-11-28 00:36:59]     "pilotErrorCode": 0,
[2025-11-28 00:36:59]     "pilotErrorDiag": "",
[2025-11-28 00:36:59]  *** Listing of results directory ***
[2025-11-28 00:36:59] total 1347608
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 00:36:59] -rwx------. 1 boincer umatlas     36292 Nov 25 23:03 runpilot2-wrapper.sh
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 23:03 queuedata.json
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:36:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-28 00:36:59] -rw-r--r--. 2 boincer umatlas 412277866 Nov 27 00:01 EVNT.47483658._003170.pool.root.1
[2025-11-28 00:36:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 00:36:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-28 00:36:59] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:01 input.tar.gz
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-28 00:36:59] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas       532 Nov 28 00:04 boinc_task_state.xml
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas      6881 Nov 28 00:28 init_data.xml
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas 938370711 Nov 28 00:32 HITS.47556173._001269.pool.root.1
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas      1059 Nov 28 00:34 memory_monitor_summary.json
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas   1516240 Nov 28 00:34 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas   2521895 Nov 28 00:35 log.47556173._001269.job.log.tgz.1
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas        95 Nov 28 00:35 pilot_heartbeat.json
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas      8641 Nov 28 00:35 heartbeat.json
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:36 boinc_mmap_file
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas        28 Nov 28 00:36 wrapper_checkpoint.txt
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas      4824 Nov 28 00:36 pilotlog.txt
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas  10180038 Nov 28 00:36 log.47556173._001269.job.log.1
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas       353 Nov 28 00:36 output.list
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:36 runtime_log
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas  12718080 Nov 28 00:36 result.tar.gz
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas       662 Nov 28 00:36 unpLDmovLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYtJKDm7I8sZn.diag
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas      9353 Nov 28 00:36 runtime_log.err
[2025-11-28 00:36:59] -rw-r--r--. 1 boincer umatlas      2146 Nov 28 00:36 stderr.txt
[2025-11-28 00:36:59] HITS file was successfully produced:
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas 938370711 Nov 28 00:32 shared/HITS.pool.root.1
[2025-11-28 00:36:59]  *** Contents of shared directory: ***
[2025-11-28 00:36:59] total 1332020
[2025-11-28 00:36:59] -rw-r--r--. 2 boincer umatlas 412277866 Nov 27 00:01 ATLAS.root_0
[2025-11-28 00:36:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-28 00:36:59] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:01 input.tar.gz
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas 938370711 Nov 28 00:32 HITS.pool.root.1
[2025-11-28 00:36:59] -rw-------. 1 boincer umatlas  12718080 Nov 28 00:36 result.tar.gz
00:37:01 (3729587): run_atlas exited; CPU time 282521.294453
00:37:01 (3729587): called boinc_finish(0)

</stderr_txt>
]]>

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