Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:52 (3599997): wrapper (7.7.26015): starting
00:01:52 (3599997): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:01:52] Arguments: --nthreads 8
[2025-11-27 00:01:52] Threads: 8
[2025-11-27 00:01:52] Checking for CVMFS
[2025-11-27 00:01:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:53] 2.13.3.0 7489 31043 380792 153347 1 681 24840978 32935936 30823 16776704 0 201591918 99.632 197307439 40579 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:53] CVMFS is ok
[2025-11-27 00:01:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:53] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:53] Checking for apptainer binary...
[2025-11-27 00:01:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:53] Running /usr/bin/apptainer --version
[2025-11-27 00:01:53] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:53] c7-13-32.aglt2.org
[2025-11-27 00:01:53] apptainer works
[2025-11-27 00:01:53] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:01:53] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:01:53] Starting ATLAS job with PandaID=6898120849
[2025-11-27 00:01:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:56:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:56:39] 2025-11-28 00:56:05,348 | INFO     | sum of square deviations: 501746678209.9497
[2025-11-27 19:56:39] 2025-11-28 00:56:05,373 | INFO     | sum of deviations: 2668911713025.463
[2025-11-27 19:56:39] 2025-11-28 00:56:05,373 | INFO     | mean x: 1764255551.0655878
[2025-11-27 19:56:39] 2025-11-28 00:56:05,373 | INFO     | mean y: 2956775.8381601362
[2025-11-27 19:56:39] 2025-11-28 00:56:05,373 | INFO     | intersect: -9381544426.656832
[2025-11-27 19:56:39] 2025-11-28 00:56:05,374 | INFO     | chi2: 7.108263519963074
[2025-11-27 19:56:39] 2025-11-28 00:56:05,375 | INFO     | sum of square deviations: 495363798170.1421
[2025-11-27 19:56:39] 2025-11-28 00:56:05,398 | INFO     | sum of deviations: 3093876480174.4775
[2025-11-27 19:56:39] 2025-11-28 00:56:05,399 | INFO     | mean x: 1764255398.572284
[2025-11-27 19:56:39] 2025-11-28 00:56:05,399 | INFO     | mean y: 2966928.0889649275
[2025-11-27 19:56:39] 2025-11-28 00:56:05,399 | INFO     | intersect: -11015981777.542631
[2025-11-27 19:56:39] 2025-11-28 00:56:05,400 | INFO     | chi2: 3.654040663100237
[2025-11-27 19:56:39] 2025-11-28 00:56:05,400 | INFO     | current chi2=3.654040663100237 (change=48.59446821522425 %)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,401 | INFO     | sum of square deviations: 489035148873.041
[2025-11-27 19:56:39] 2025-11-28 00:56:05,428 | INFO     | sum of deviations: 3288590973297.3467
[2025-11-27 19:56:39] 2025-11-28 00:56:05,429 | INFO     | mean x: 1764255246.0773196
[2025-11-27 19:56:39] 2025-11-28 00:56:05,429 | INFO     | mean y: 2971612.751718213
[2025-11-27 19:56:39] 2025-11-28 00:56:05,429 | INFO     | intersect: -11861030167.51419
[2025-11-27 19:56:39] 2025-11-28 00:56:05,430 | INFO     | chi2: 2.5326963414345163
[2025-11-27 19:56:39] 2025-11-28 00:56:05,430 | INFO     | current chi2=2.5326963414345163 (change=30.68778990309119 %)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,431 | INFO     | sum of square deviations: 482760426876.36896
[2025-11-27 19:56:39] 2025-11-28 00:56:05,467 | INFO     | sum of deviations: 3283019432642.663
[2025-11-27 19:56:39] 2025-11-28 00:56:05,467 | INFO     | mean x: 1764255093.5798101
[2025-11-27 19:56:39] 2025-11-28 00:56:05,467 | INFO     | mean y: 2971476.549611734
[2025-11-27 19:56:39] 2025-11-28 00:56:05,467 | INFO     | intersect: -11994871415.913946
[2025-11-27 19:56:39] 2025-11-28 00:56:05,468 | INFO     | chi2: 2.50857740727088
[2025-11-27 19:56:39] 2025-11-28 00:56:05,468 | INFO     | current chi2=2.50857740727088 (change=0.9523026416177224 %)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,468 | INFO     | right removable region: 1158
[2025-11-27 19:56:39] 2025-11-28 00:56:05,469 | INFO     | sum of square deviations: 495362819732.4276
[2025-11-27 19:56:39] 2025-11-28 00:56:05,505 | INFO     | sum of deviations: 2359740555868.172
[2025-11-27 19:56:39] 2025-11-28 00:56:05,505 | INFO     | mean x: 1764255703.570573
[2025-11-27 19:56:39] 2025-11-28 00:56:05,505 | INFO     | mean y: 2964152.3190761334
[2025-11-27 19:56:39] 2025-11-28 00:56:05,505 | INFO     | intersect: -8401351974.769307
[2025-11-27 19:56:39] 2025-11-28 00:56:05,506 | INFO     | chi2: 5.0247834104208895
[2025-11-27 19:56:39] 2025-11-28 00:56:05,506 | INFO     | current chi2=5.0247834104208895 (change=29.31067628107586 %)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,508 | INFO     | sum of square deviations: 489034120103.906
[2025-11-27 19:56:39] 2025-11-28 00:56:05,556 | INFO     | sum of deviations: 2261928876280.0635
[2025-11-27 19:56:39] 2025-11-28 00:56:05,556 | INFO     | mean x: 1764255856.0661511
[2025-11-27 19:56:39] 2025-11-28 00:56:05,556 | INFO     | mean y: 2966508.6615120275
[2025-11-27 19:56:39] 2025-11-28 00:56:05,556 | INFO     | intersect: -8157243795.548622
[2025-11-27 19:56:39] 2025-11-28 00:56:05,557 | INFO     | chi2: 4.940793834398082
[2025-11-27 19:56:39] 2025-11-28 00:56:05,557 | INFO     | current chi2=4.940793834398082 (change=1.671506394656161 %)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,557 | INFO     | left removable region: 20
[2025-11-27 19:56:39] 2025-11-28 00:56:05,558 | INFO     | sum of square deviations: 456992886854.0569
[2025-11-27 19:56:39] 2025-11-28 00:56:05,598 | INFO     | sum of deviations: 2719100088286.842
[2025-11-27 19:56:39] 2025-11-28 00:56:05,599 | INFO     | mean x: 1764255673.065905
[2025-11-27 19:56:39] 2025-11-28 00:56:05,599 | INFO     | mean y: 2985173.2820738135
[2025-11-27 19:56:39] 2025-11-28 00:56:05,599 | INFO     | intersect: -10494306785.500803
[2025-11-27 19:56:39] 2025-11-28 00:56:05,600 | INFO     | chi2: 0.2566275937066607
[2025-11-27 19:56:39] 2025-11-28 00:56:05,600 | INFO     | current memory leak: 5.95 B/s (using 1138 data points, chi2=0.26)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | could have reported an average CPU frequency of 3290 MHz (43 samples)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | ..............................
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | . Timing measurements:
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | . get job = 0 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | . initial setup = 2 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | . payload setup = 10 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,601 | INFO     | . stage-in = 0 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,602 | INFO     | . payload execution = 71591 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,602 | INFO     | . stage-out = 4 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,602 | INFO     | . log creation = 1 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,602 | INFO     | ..............................
[2025-11-27 19:56:39] 2025-11-28 00:56:05,799 | INFO     | 
[2025-11-27 19:56:39] 2025-11-28 00:56:05,807 | INFO     | job summary report
[2025-11-27 19:56:39] 2025-11-28 00:56:05,811 | INFO     | --------------------------------------------------
[2025-11-27 19:56:39] 2025-11-28 00:56:05,811 | INFO     | PanDA job id: 6898120849
[2025-11-27 19:56:39] 2025-11-28 00:56:05,811 | INFO     | task id: 47556161
[2025-11-27 19:56:39] 2025-11-28 00:56:05,823 | INFO     | errors: (none)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,834 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | pilot state: finished 
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | transexitcode: 0
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | exeerrorcode: 0
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | exeerrordiag: 
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | exitcode: 0
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | exitmsg: OK
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | cpuconsumptiontime: 196812 s
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | nevents: 1000
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | neventsw: 0
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | pid: 3635957
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | pgrp: 3635957
[2025-11-27 19:56:39] 2025-11-28 00:56:05,836 | INFO     | corecount: 8
[2025-11-27 19:56:39] 2025-11-28 00:56:05,837 | INFO     | event service: False
[2025-11-27 19:56:39] 2025-11-28 00:56:05,837 | INFO     | sizes: {0: 2284264, 7: 2284526, 11: 2284554, 71605: 2342861, 71609: 2351911, 71617: 2352101}
[2025-11-27 19:56:39] 2025-11-28 00:56:05,837 | INFO     | --------------------------------------------------
[2025-11-27 19:56:39] 2025-11-28 00:56:05,837 | INFO     | 
[2025-11-27 19:56:39] 2025-11-28 00:56:05,837 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | job 6898120849 has completed (purged errors)
[2025-11-27 19:56:39] 2025-11-28 00:56:05,863 | INFO     | overall cleanup function is called
[2025-11-27 19:56:39] 2025-11-28 00:56:06,483 | INFO     | PID=3607234 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 19:56:39] 2025-11-28 00:56:06,484 | INFO     | .. there are 40 such processes running
[2025-11-27 19:56:39] 2025-11-28 00:56:06,881 | INFO     | --- collectZombieJob: --- 10, [3635957]
[2025-11-27 19:56:39] 2025-11-28 00:56:06,882 | INFO     | zombie collector waiting for pid 3635957
[2025-11-27 19:56:39] 2025-11-28 00:56:06,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:56:39] 2025-11-28 00:56:06,882 | INFO     | collected zombie processes
[2025-11-27 19:56:39] 2025-11-28 00:56:06,882 | INFO     | will attempt to kill all subprocesses of pid=3635957
[2025-11-27 19:56:39] 2025-11-28 00:56:07,506 | INFO     | process IDs to be killed: [3635957] (in reverse order)
[2025-11-27 19:56:39] 2025-11-28 00:56:07,667 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:56:39] 2025-11-28 00:56:07,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:56:39] 2025-11-28 00:56:07,733 | INFO     | did not find any defunct processes belonging to 3635957
[2025-11-27 19:56:39] 2025-11-28 00:56:07,771 | INFO     | did not find any defunct processes belonging to 3635957
[2025-11-27 19:56:39] 2025-11-28 00:56:07,780 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:56:39] 2025-11-28 00:56:07,780 | INFO     | ready for new job
[2025-11-27 19:56:39] 2025-11-28 00:56:07,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:56:39] 2025-11-28 00:56:07,789 | INFO     | ***************************************
[2025-11-27 19:56:39] 2025-11-28 00:56:07,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:56:39] 2025-11-28 00:56:07,789 | INFO     | ***************************************
[2025-11-27 19:56:39] 2025-11-28 00:56:07,789 | INFO     | 
[2025-11-27 19:56:39] 2025-11-28 00:56:07,797 | INFO     | architecture information:
[2025-11-27 19:56:39] 2025-11-28 00:56:07,801 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:56:39] 2025-11-28 00:56:07,826 | INFO     | cat /etc/os-release:
[2025-11-27 19:56:39] NAME="CentOS Linux"
[2025-11-27 19:56:39] VERSION="7 (Core)"
[2025-11-27 19:56:39] ID="centos"
[2025-11-27 19:56:39] ID_LIKE="rhel fedora"
[2025-11-27 19:56:39] VERSION_ID="7"
[2025-11-27 19:56:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:56:39] ANSI_COLOR="0;31"
[2025-11-27 19:56:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:56:39] HOME_URL="https://www.centos.org/"
[2025-11-27 19:56:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:56:39] 
[2025-11-27 19:56:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:56:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:56:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:56:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:56:39] 
[2025-11-27 19:56:39] 2025-11-28 00:56:07,826 | INFO     | ***************************************
[2025-11-27 19:56:39] 2025-11-28 00:56:08,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 19:56:39] 2025-11-28 00:56:08,353 | INFO     | sufficient remaining disk space (91106574336 B)
[2025-11-27 19:56:39] 2025-11-28 00:56:08,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:56:39] 2025-11-28 00:56:08,388 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:56:39] 2025-11-28 00:56:08,388 | INFO     | update_server=False
[2025-11-27 19:56:39] 2025-11-28 00:56:08,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:56:39] 2025-11-28 00:56:08,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:56:39] 2025-11-28 00:56:08,389 | INFO     | aborting loop
[2025-11-27 19:56:39] 2025-11-28 00:56:08,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:56:39] 2025-11-28 00:56:08,891 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:56:39] 2025-11-28 00:56:09,293 | INFO     | all data control threads have been joined
[2025-11-27 19:56:39] 2025-11-28 00:56:09,394 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:09,400 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:09,401 | INFO     | all payload control threads have been joined
[2025-11-27 19:56:39] 2025-11-28 00:56:09,497 | INFO     | all job control threads have been joined
[2025-11-27 19:56:39] 2025-11-28 00:56:09,661 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:09,705 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:09,783 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:09,965 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,287 | INFO     | [job] validate thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,308 | INFO     | [data] control thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,313 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,407 | INFO     | [payload] control thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,504 | INFO     | [job] control thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,529 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,629 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:10,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:56:39] 2025-11-28 00:56:10,880 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:11,805 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:12,899 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:56:39] 2025-11-28 00:56:17,888 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:56:39] 2025-11-28 00:56:19,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140691863299904)>', '<ExcThread(monitor, started 140690705082112)>']
[2025-11-27 19:56:39] 2025-11-28 00:56:24,977 | INFO     | all workflow threads have been joined
[2025-11-27 19:56:39] 2025-11-28 00:56:24,977 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:56:39] 2025-11-28 00:56:24,978 | INFO     | traces error code: 0
[2025-11-27 19:56:39] 2025-11-28 00:56:24,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:56:39] 2025-11-28 00:56:39,014 | INFO     | PID=3607234 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:56:39] 2025-11-28 00:56:39,014 | INFO     | .. there are 40 such processes running
[2025-11-27 19:56:39] 2025-11-28 00:56:39,015 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:56:39] 2025-11-28 00:56:39,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:56:39] 2025-11-28 00:56:39,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:56:39] 2025-11-28 00:56:39,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:56:39] 2025-11-28 00:56:39,015 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 19:56:39] 2025-11-28 00:56:39,015 | INFO     | [monitor] control thread has ended
[2025-11-27 19:56:39] 2025-11-28 00:56:39,166 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:56:39] 2025-11-28 00:56:39,215 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:56:39] 2025-11-28 00:56:39,224 [wrapper] pilotpid: 3607234
[2025-11-27 19:56:39] 2025-11-28 00:56:39,226 [wrapper] Pilot exit status: 0
[2025-11-27 19:56:39] 2025-11-28 00:56:39,236 [wrapper] pandaids: 6898120849
[2025-11-27 19:56:39] 2025-11-28 00:56:39,344 [wrapper] cleanup supervisor_pilot 3990249 3607235
[2025-11-27 19:56:39] 2025-11-28 00:56:39,347 [wrapper] Test setup, not cleaning
[2025-11-27 19:56:39] 2025-11-28 00:56:39,350 [wrapper] apfmon messages muted
[2025-11-27 19:56:39] 2025-11-28 00:56:39,353 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:56:39] 2025-11-28 00:56:39,355 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:56:39]  *** Error codes and diagnostics ***
[2025-11-27 19:56:39]     "exeErrorCode": 0,
[2025-11-27 19:56:39]     "exeErrorDiag": "",
[2025-11-27 19:56:39]     "pilotErrorCode": 0,
[2025-11-27 19:56:39]     "pilotErrorDiag": "",
[2025-11-27 19:56:39]  *** Listing of results directory ***
[2025-11-27 19:56:39] total 1329464
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 19:56:39] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:56:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 19:56:39] -rw-r--r--. 2 boincer umatlas 410392685 Nov 27 00:01 EVNT.47483658._002447.pool.root.1
[2025-11-27 19:56:39] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 00:01 input.tar.gz
[2025-11-27 19:56:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 19:56:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 19:56:39] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:42 boinc_task_state.xml
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas      6902 Nov 27 19:48 init_data.xml
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas 924827578 Nov 27 19:55 HITS.47556161._004294.pool.root.1
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas      1049 Nov 27 19:55 memory_monitor_summary.json
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas   2247574 Nov 27 19:55 log.47556161._004294.job.log.tgz.1
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas      8579 Nov 27 19:56 heartbeat.json
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:56 boinc_mmap_file
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:56 wrapper_checkpoint.txt
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas        95 Nov 27 19:56 pilot_heartbeat.json
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas       893 Nov 27 19:56 pilotlog.txt
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas   8869836 Nov 27 19:56 log.47556161._004294.job.log.1
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas       353 Nov 27 19:56 output.list
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:56 runtime_log
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas  11141120 Nov 27 19:56 result.tar.gz
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas       660 Nov 27 19:56 vsUNDmniLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzrMKDmfmTfFn.diag
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 19:56 runtime_log.err
[2025-11-27 19:56:39] -rw-r--r--. 1 boincer umatlas     16409 Nov 27 19:56 stderr.txt
[2025-11-27 19:56:39] HITS file was successfully produced:
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas 924827578 Nov 27 19:55 shared/HITS.pool.root.1
[2025-11-27 19:56:39]  *** Contents of shared directory: ***
[2025-11-27 19:56:39] total 1315412
[2025-11-27 19:56:39] -rw-r--r--. 2 boincer umatlas 410392685 Nov 27 00:01 ATLAS.root_0
[2025-11-27 19:56:39] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 00:01 input.tar.gz
[2025-11-27 19:56:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas 924827578 Nov 27 19:55 HITS.pool.root.1
[2025-11-27 19:56:39] -rw-------. 1 boincer umatlas  11141120 Nov 27 19:56 result.tar.gz
19:56:40 (3599997): run_atlas exited; CPU time 196885.304373
19:56:40 (3599997): called boinc_finish(0)

</stderr_txt>
]]>

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