Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:48 (2510482): wrapper (7.7.26015): starting
00:00:48 (2510482): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:00:48] Arguments: --nthreads 9
[2025-11-27 00:00:48] Threads: 9
[2025-11-27 00:00:48] Checking for CVMFS
[2025-11-27 00:00:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:50] 2.13.3.0 12359 31044 386652 153347 2 707 23624744 32935937 39732 16776704 0 192049937 99.615 188731972 32523 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:00:50] CVMFS is ok
[2025-11-27 00:00:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:50] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:50] Checking for apptainer binary...
[2025-11-27 00:00:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:50] Running /usr/bin/apptainer --version
[2025-11-27 00:00:50] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:51] c6-12-29-3.aglt2.org
[2025-11-27 00:00:51] apptainer works
[2025-11-27 00:00:51] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:00:51] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:00:51] Starting ATLAS job with PandaID=6898120840
[2025-11-27 00:00:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:37:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:37:01] 2025-11-27 23:36:13,209 | INFO     | time since job start (66877s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:15,218 | INFO     | time since job start (66879s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:15,491 | INFO     | monitor loop #3552: job 0:6898120840 is in state 'finished'
[2025-11-27 18:37:01] 2025-11-27 23:36:15,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:37:01] 2025-11-27 23:36:17,235 | INFO     | time since job start (66881s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:18,003 | INFO     | monitor loop #3553: job 0:6898120840 is in state 'finished'
[2025-11-27 18:37:01] 2025-11-27 23:36:18,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:37:01] 2025-11-27 23:36:19,266 | INFO     | time since job start (66883s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:20,537 | INFO     | monitor loop #3554: job 0:6898120840 is in state 'finished'
[2025-11-27 18:37:01] 2025-11-27 23:36:20,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:37:01] 2025-11-27 23:36:21,277 | INFO     | time since job start (66885s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:23,041 | INFO     | monitor loop #3555: job 0:6898120840 is in state 'finished'
[2025-11-27 18:37:01] 2025-11-27 23:36:23,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:37:01] 2025-11-27 23:36:23,307 | INFO     | time since job start (66887s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:24,704 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:37:01] 2025-11-27 23:36:24,737 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2548.72928125
[2025-11-27 18:37:01] 2025-11-27 23:36:24,797 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898120840/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:37:01] 2025-11-27 23:36:24,798 | INFO     | extracted standard info from prmon json
[2025-11-27 18:37:01] 2025-11-27 23:36:24,798 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:37:01] 2025-11-27 23:36:24,798 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:37:01] 2025-11-27 23:36:24,894 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:37:01] 2025-11-27 23:36:24,897 | INFO     | sum of square deviations: 407114502507.33746
[2025-11-27 18:37:01] 2025-11-27 23:36:24,969 | INFO     | sum of deviations: 2747294877126.7383
[2025-11-27 18:37:01] 2025-11-27 23:36:24,969 | INFO     | mean x: 1764253159.350685
[2025-11-27 18:37:01] 2025-11-27 23:36:24,970 | INFO     | mean y: 3053371.01369863
[2025-11-27 18:37:01] 2025-11-27 23:36:24,970 | INFO     | intersect: -11902500562.308643
[2025-11-27 18:37:01] 2025-11-27 23:36:24,971 | INFO     | chi2: 18.139669087053193
[2025-11-27 18:37:01] 2025-11-27 23:36:24,994 | INFO     | sum of square deviations: 401563750902.0812
[2025-11-27 18:37:01] 2025-11-27 23:36:25,109 | INFO     | sum of deviations: 3141959315885.0044
[2025-11-27 18:37:01] 2025-11-27 23:36:25,109 | INFO     | mean x: 1764253006.8614678
[2025-11-27 18:37:01] 2025-11-27 23:36:25,109 | INFO     | mean y: 3064211.0596330273
[2025-11-27 18:37:01] 2025-11-27 23:36:25,109 | INFO     | intersect: -13800998426.6514
[2025-11-27 18:37:01] 2025-11-27 23:36:25,179 | INFO     | chi2: 14.662784287990673
[2025-11-27 18:37:01] 2025-11-27 23:36:25,182 | INFO     | current chi2=14.662784287990673 (change=19.167300033847216 %)
[2025-11-27 18:37:01] 2025-11-27 23:36:25,182 | INFO     | right removable region: 1089
[2025-11-27 18:37:01] 2025-11-27 23:36:25,193 | INFO     | sum of square deviations: 401562180762.08215
[2025-11-27 18:37:01] 2025-11-27 23:36:25,218 | INFO     | sum of deviations: 2324690796703.716
[2025-11-27 18:37:01] 2025-11-27 23:36:25,218 | INFO     | mean x: 1764253311.8614678
[2025-11-27 18:37:01] 2025-11-27 23:36:25,219 | INFO     | mean y: 3064974.7266055048
[2025-11-27 18:37:01] 2025-11-27 23:36:25,219 | INFO     | intersect: -10210405400.782616
[2025-11-27 18:37:01] 2025-11-27 23:36:25,220 | INFO     | chi2: 14.845023556911084
[2025-11-27 18:37:01] 2025-11-27 23:36:25,220 | INFO     | current chi2=14.845023556911084 (change=18.16265508665532 %)
[2025-11-27 18:37:01] 2025-11-27 23:36:25,221 | INFO     | left removable region: 10
[2025-11-27 18:37:01] 2025-11-27 23:36:25,222 | INFO     | sum of square deviations: 389527419194.4471
[2025-11-27 18:37:01] 2025-11-27 23:36:25,246 | INFO     | sum of deviations: 2600169366724.902
[2025-11-27 18:37:01] 2025-11-27 23:36:25,246 | INFO     | mean x: 1764253281.3809083
[2025-11-27 18:37:01] 2025-11-27 23:36:25,247 | INFO     | mean y: 3083312.8785912883
[2025-11-27 18:37:01] 2025-11-27 23:36:25,247 | INFO     | intersect: -11773641793.860497
[2025-11-27 18:37:01] 2025-11-27 23:36:25,248 | INFO     | chi2: 10.112822031550502
[2025-11-27 18:37:01] 2025-11-27 23:36:25,249 | INFO     | current memory leak: 6.68 B/s (using 1079 data points, chi2=10.11)
[2025-11-27 18:37:01] 2025-11-27 23:36:25,250 | INFO     | could have reported an average CPU frequency of 2591 MHz (40 samples)
[2025-11-27 18:37:01] 2025-11-27 23:36:25,250 | INFO     | ..............................
[2025-11-27 18:37:01] 2025-11-27 23:36:25,250 | INFO     | . Timing measurements:
[2025-11-27 18:37:01] 2025-11-27 23:36:25,250 | INFO     | . get job = 0 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,250 | INFO     | . initial setup = 4 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,251 | INFO     | . payload setup = 23 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,251 | INFO     | . stage-in = 0 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,251 | INFO     | . payload execution = 66764 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,251 | INFO     | . stage-out = 13 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,251 | INFO     | . log creation = 3 s
[2025-11-27 18:37:01] 2025-11-27 23:36:25,251 | INFO     | ..............................
[2025-11-27 18:37:01] 2025-11-27 23:36:25,337 | INFO     | time since job start (66889s) is within the limit (172800.0s)
[2025-11-27 18:37:01] 2025-11-27 23:36:26,040 | INFO     | 
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | job summary report
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | --------------------------------------------------
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | PanDA job id: 6898120840
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | task id: 47556161
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | errors: (none)
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | pilot state: finished 
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | transexitcode: 0
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | exeerrorcode: 0
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | exeerrordiag: 
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | exitcode: 0
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | exitmsg: OK
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | cpuconsumptiontime: 269286 s
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | nevents: 1000
[2025-11-27 18:37:01] 2025-11-27 23:36:26,041 | INFO     | neventsw: 0
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | pid: 2555997
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | pgrp: 2555997
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | corecount: 9
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | event service: False
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | sizes: {0: 2284093, 1: 2284292, 13: 2284292, 24: 2284610, 35: 2284638, 66790: 2339411, 66791: 2339538, 66806: 2348644, 66838: 2348834}
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | --------------------------------------------------
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | 
[2025-11-27 18:37:01] 2025-11-27 23:36:26,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 18:37:01] 2025-11-27 23:36:26,147 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,147 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,149 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,149 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:37:01] 2025-11-27 23:36:26,149 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,149 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:37:01] 2025-11-27 23:36:26,149 | INFO     | job 6898120840 has completed (purged errors)
[2025-11-27 18:37:01] 2025-11-27 23:36:26,149 | INFO     | overall cleanup function is called
[2025-11-27 18:37:01] 2025-11-27 23:36:27,180 | INFO     | --- collectZombieJob: --- 10, [2555997]
[2025-11-27 18:37:01] 2025-11-27 23:36:27,180 | INFO     | zombie collector waiting for pid 2555997
[2025-11-27 18:37:01] 2025-11-27 23:36:27,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:37:01] 2025-11-27 23:36:27,180 | INFO     | collected zombie processes
[2025-11-27 18:37:01] 2025-11-27 23:36:27,180 | INFO     | will attempt to kill all subprocesses of pid=2555997
[2025-11-27 18:37:01] 2025-11-27 23:36:28,956 | INFO     | process IDs to be killed: [2555997] (in reverse order)
[2025-11-27 18:37:01] 2025-11-27 23:36:29,566 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:37:01] 2025-11-27 23:36:29,566 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:37:01] 2025-11-27 23:36:29,593 | INFO     | did not find any defunct processes belonging to 2555997
[2025-11-27 18:37:01] 2025-11-27 23:36:29,620 | INFO     | did not find any defunct processes belonging to 2555997
[2025-11-27 18:37:01] 2025-11-27 23:36:29,622 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:37:01] 2025-11-27 23:36:29,622 | INFO     | ready for new job
[2025-11-27 18:37:01] 2025-11-27 23:36:29,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:37:01] 2025-11-27 23:36:29,629 | INFO     | ***************************************
[2025-11-27 18:37:01] 2025-11-27 23:36:29,629 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:37:01] 2025-11-27 23:36:29,629 | INFO     | ***************************************
[2025-11-27 18:37:01] 2025-11-27 23:36:29,629 | INFO     | 
[2025-11-27 18:37:01] 2025-11-27 23:36:29,635 | INFO     | architecture information:
[2025-11-27 18:37:01] 2025-11-27 23:36:29,640 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:37:01] 2025-11-27 23:36:29,682 | INFO     | cat /etc/os-release:
[2025-11-27 18:37:01] NAME="CentOS Linux"
[2025-11-27 18:37:01] VERSION="7 (Core)"
[2025-11-27 18:37:01] ID="centos"
[2025-11-27 18:37:01] ID_LIKE="rhel fedora"
[2025-11-27 18:37:01] VERSION_ID="7"
[2025-11-27 18:37:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:37:01] ANSI_COLOR="0;31"
[2025-11-27 18:37:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:37:01] HOME_URL="https://www.centos.org/"
[2025-11-27 18:37:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:37:01] 
[2025-11-27 18:37:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:37:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:37:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:37:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:37:01] 
[2025-11-27 18:37:01] 2025-11-27 23:36:29,682 | INFO     | ***************************************
[2025-11-27 18:37:01] 2025-11-27 23:36:30,186 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 18:37:01] 2025-11-27 23:36:30,292 | INFO     | sufficient remaining disk space (88563777536 B)
[2025-11-27 18:37:01] 2025-11-27 23:36:30,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:37:01] 2025-11-27 23:36:30,293 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:37:01] 2025-11-27 23:36:30,293 | INFO     | update_server=False
[2025-11-27 18:37:01] 2025-11-27 23:36:30,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:37:01] 2025-11-27 23:36:30,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:37:01] 2025-11-27 23:36:30,612 | INFO     | all payload control threads have been joined
[2025-11-27 18:37:01] 2025-11-27 23:36:30,740 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 18:37:01] 2025-11-27 23:36:30,740 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 18:37:01] 2025-11-27 23:36:30,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:37:01] 2025-11-27 23:36:30,740 | INFO     | will abort loop
[2025-11-27 18:37:01] 2025-11-27 23:36:31,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:37:01] 2025-11-27 23:36:31,299 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,334 | INFO     | all data control threads have been joined
[2025-11-27 18:37:01] 2025-11-27 23:36:31,338 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,597 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,597 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,618 | INFO     | [payload] control thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:37:01] 2025-11-27 23:36:31,746 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:31,904 | INFO     | all job control threads have been joined
[2025-11-27 18:37:01] 2025-11-27 23:36:32,076 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,133 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,309 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,340 | INFO     | [data] control thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,481 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,481 | INFO     | [job] validate thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,546 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:32,910 | INFO     | [job] control thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:35,746 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:37:01] 2025-11-27 23:36:38,516 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:37:01] 2025-11-27 23:36:39,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140345414760256)>', '<ExcThread(monitor, started 140345052468992)>']
[2025-11-27 18:37:01] 2025-11-27 23:36:44,186 | INFO     | all workflow threads have been joined
[2025-11-27 18:37:01] 2025-11-27 23:36:44,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:37:01] 2025-11-27 23:36:44,186 | INFO     | traces error code: 0
[2025-11-27 18:37:01] 2025-11-27 23:36:44,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:37:01] 2025-11-27 23:36:59,946 | INFO     | PID=2519954 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:37:01] 2025-11-27 23:36:59,946 | INFO     | .. there are 59 such processes running
[2025-11-27 18:37:01] 2025-11-27 23:36:59,947 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:37:01] 2025-11-27 23:36:59,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:37:01] 2025-11-27 23:36:59,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:37:01] 2025-11-27 23:36:59,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:37:01] 2025-11-27 23:36:59,948 | INFO     | [monitor] control thread has ended
[2025-11-27 18:37:01] 2025-11-27 23:37:00,763 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:37:01] 2025-11-27 23:37:00,782 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:37:01] 2025-11-27 23:37:00,793 [wrapper] pilotpid: 2519954
[2025-11-27 18:37:01] 2025-11-27 23:37:00,814 [wrapper] Pilot exit status: 0
[2025-11-27 18:37:01] 2025-11-27 23:37:00,896 [wrapper] pandaids: 6898120840
[2025-11-27 18:37:01] 2025-11-27 23:37:01,138 [wrapper] cleanup supervisor_pilot 3560228 2519956
[2025-11-27 18:37:01] 2025-11-27 23:37:01,178 [wrapper] Test setup, not cleaning
[2025-11-27 18:37:01] 2025-11-27 23:37:01,210 [wrapper] apfmon messages muted
[2025-11-27 18:37:01] 2025-11-27 23:37:01,264 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:37:01] 2025-11-27 23:37:01,316 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:37:01]  *** Error codes and diagnostics ***
[2025-11-27 18:37:01]     "exeErrorCode": 0,
[2025-11-27 18:37:01]     "exeErrorDiag": "",
[2025-11-27 18:37:01]     "pilotErrorCode": 0,
[2025-11-27 18:37:01]     "pilotErrorDiag": "",
[2025-11-27 18:37:01]  *** Listing of results directory ***
[2025-11-27 18:37:01] total 1315784
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 18:37:01] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:37:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-27 18:37:01] -rw-r--r--. 2 boincer umatlas 407555997 Nov 27 00:00 EVNT.47483658._002446.pool.root.1
[2025-11-27 18:37:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 18:37:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-27 18:37:01] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:00 input.tar.gz
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:00 pandaJob.out
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas    991570 Nov 27 00:01 agis_schedconf.cvmfs.json
[2025-11-27 18:37:01] drwx------. 5 boincer umatlas      4096 Nov 27 00:01 pilot3
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:11 boinc_task_state.xml
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 18:32 init_data.xml
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas 915571143 Nov 27 18:34 HITS.47556161._004285.pool.root.1
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas      1059 Nov 27 18:35 memory_monitor_summary.json
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas   2290294 Nov 27 18:35 log.47556161._004285.job.log.tgz.1
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas      8630 Nov 27 18:36 heartbeat.json
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:36 boinc_mmap_file
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas        95 Nov 27 18:36 pilot_heartbeat.json
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas       823 Nov 27 18:36 pilotlog.txt
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:37 wrapper_checkpoint.txt
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas   7867137 Nov 27 18:37 log.47556161._004285.job.log.1
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas       353 Nov 27 18:37 output.list
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:37 runtime_log
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas  10178560 Nov 27 18:37 result.tar.gz
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 18:37 runtime_log.err
[2025-11-27 18:37:01] -rw-------. 1 boincer umatlas       662 Nov 27 18:37 RPKNDmniLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrrMKDm8oiYHn.diag
[2025-11-27 18:37:01] -rw-r--r--. 1 boincer umatlas     21765 Nov 27 18:37 stderr.txt
[2025-11-27 18:37:01] HITS file was successfully produced:
[2025-11-27 18:37:02] -rw-------. 1 boincer umatlas 915571143 Nov 27 18:34 shared/HITS.pool.root.1
[2025-11-27 18:37:02]  *** Contents of shared directory: ***
[2025-11-27 18:37:02] total 1302664
[2025-11-27 18:37:02] -rw-r--r--. 2 boincer umatlas 407555997 Nov 27 00:00 ATLAS.root_0
[2025-11-27 18:37:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 18:37:02] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:00 input.tar.gz
[2025-11-27 18:37:02] -rw-------. 1 boincer umatlas 915571143 Nov 27 18:34 HITS.pool.root.1
[2025-11-27 18:37:02] -rw-------. 1 boincer umatlas  10178560 Nov 27 18:37 result.tar.gz
18:37:03 (2510482): run_atlas exited; CPU time 272245.711469
18:37:03 (2510482): called boinc_finish(0)

</stderr_txt>
]]>

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