Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:29 (1051297): wrapper (7.7.26015): starting
00:04:29 (1051297): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:04:29] Arguments: --nthreads 8
[2025-11-27 00:04:29] Threads: 8
[2025-11-27 00:04:29] Checking for CVMFS
[2025-11-27 00:04:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:31] 2.13.3.0 10223 31024 243436 153347 1 755 38921305 40960001 61961 16776704 0 406152138 99.764 252059037 50664 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:04:31] CVMFS is ok
[2025-11-27 00:04:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:31] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:31] Checking for apptainer binary...
[2025-11-27 00:04:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:31] Running /usr/bin/apptainer --version
[2025-11-27 00:04:31] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:31] c8-7-6.aglt2.org
[2025-11-27 00:04:31] apptainer works
[2025-11-27 00:04:31] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:04:31] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:04:31] Starting ATLAS job with PandaID=6898175061
[2025-11-27 00:04:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:05:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:05:29] 2025-11-27 12:04:49,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,454 | INFO     | time since job start (25152s) is within the limit (172800.0s)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,503 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 07:05:29] 2025-11-27 12:04:50,508 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.7652890625027
[2025-11-27 07:05:29] 2025-11-27 12:04:50,523 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6898175061/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,523 | INFO     | extracted standard info from prmon json
[2025-11-27 07:05:29] 2025-11-27 12:04:50,523 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:05:29] 2025-11-27 12:04:50,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:05:29] 2025-11-27 12:04:50,528 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:05:29] 2025-11-27 12:04:50,528 | INFO     | sum of square deviations: 21369722422.72186
[2025-11-27 07:05:29] 2025-11-27 12:04:50,531 | INFO     | sum of deviations: 299703121829.4732
[2025-11-27 07:05:29] 2025-11-27 12:04:50,531 | INFO     | mean x: 1764232581.5658536
[2025-11-27 07:05:29] 2025-11-27 12:04:50,531 | INFO     | mean y: 2835966.519512195
[2025-11-27 07:05:29] 2025-11-27 12:04:50,531 | INFO     | intersect: -24739928673.5282
[2025-11-27 07:05:29] 2025-11-27 12:04:50,532 | INFO     | chi2: 5.824481282846442
[2025-11-27 07:05:29] 2025-11-27 12:04:50,532 | INFO     | sum of square deviations: 20597728487.64441
[2025-11-27 07:05:29] 2025-11-27 12:04:50,534 | INFO     | sum of deviations: 422378134027.2669
[2025-11-27 07:05:29] 2025-11-27 12:04:50,534 | INFO     | mean x: 1764232429.1037037
[2025-11-27 07:05:29] 2025-11-27 12:04:50,534 | INFO     | mean y: 2860148.422222222
[2025-11-27 07:05:29] 2025-11-27 12:04:50,535 | INFO     | intersect: -36174585429.72532
[2025-11-27 07:05:29] 2025-11-27 12:04:50,535 | INFO     | chi2: 3.0335039221576476
[2025-11-27 07:05:29] 2025-11-27 12:04:50,535 | INFO     | current chi2=3.0335039221576476 (change=47.91804154145783 %)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,535 | INFO     | sum of square deviations: 19844449219.239998
[2025-11-27 07:05:29] 2025-11-27 12:04:50,537 | INFO     | sum of deviations: 423822899250.90045
[2025-11-27 07:05:29] 2025-11-27 12:04:50,537 | INFO     | mean x: 1764232276.63
[2025-11-27 07:05:29] 2025-11-27 12:04:50,537 | INFO     | mean y: 2860423.175
[2025-11-27 07:05:29] 2025-11-27 12:04:50,538 | INFO     | intersect: -37676292581.907974
[2025-11-27 07:05:29] 2025-11-27 12:04:50,538 | INFO     | chi2: 2.9752349810827825
[2025-11-27 07:05:29] 2025-11-27 12:04:50,538 | INFO     | current chi2=2.9752349810827825 (change=1.9208460766854734 %)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,538 | INFO     | right removable region: 399
[2025-11-27 07:05:29] 2025-11-27 12:04:50,538 | INFO     | sum of square deviations: 20596986488.849373
[2025-11-27 07:05:29] 2025-11-27 12:04:50,540 | INFO     | sum of deviations: 174703341358.36792
[2025-11-27 07:05:29] 2025-11-27 12:04:50,540 | INFO     | mean x: 1764232734.1012347
[2025-11-27 07:05:29] 2025-11-27 12:04:50,540 | INFO     | mean y: 2860579.064197531
[2025-11-27 07:05:29] 2025-11-27 12:04:50,540 | INFO     | intersect: -14961335942.992798
[2025-11-27 07:05:29] 2025-11-27 12:04:50,541 | INFO     | chi2: 3.0316139931550454
[2025-11-27 07:05:29] 2025-11-27 12:04:50,541 | INFO     | current chi2=3.0316139931550454 (change=47.95048956405116 %)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,541 | INFO     | sum of square deviations: 19843162491.239994
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | sum of deviations: 148341473695.12018
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | mean x: 1764232886.63
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | mean y: 2865906.44
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | intersect: -13186004892.73955
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | chi2: 2.9718985807364886
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | current chi2=2.9718985807364886 (change=1.9697564582227736 %)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,543 | INFO     | left removable region: 20
[2025-11-27 07:05:29] 2025-11-27 12:04:50,544 | INFO     | sum of square deviations: 16879020841.187305
[2025-11-27 07:05:29] 2025-11-27 12:04:50,545 | INFO     | sum of deviations: 232808383439.36676
[2025-11-27 07:05:29] 2025-11-27 12:04:50,545 | INFO     | mean x: 1764232856.2506597
[2025-11-27 07:05:29] 2025-11-27 12:04:50,545 | INFO     | mean y: 2900049.5329815303
[2025-11-27 07:05:29] 2025-11-27 12:04:50,545 | INFO     | intersect: -24330750766.993965
[2025-11-27 07:05:29] 2025-11-27 12:04:50,546 | INFO     | chi2: 0.03480158606573315
[2025-11-27 07:05:29] 2025-11-27 12:04:50,546 | INFO     | current memory leak: 13.79 B/s (using 379 data points, chi2=0.03)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,546 | INFO     | could have reported an average CPU frequency of 3774 MHz (17 samples)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,546 | INFO     | ..............................
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . Timing measurements:
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . get job = 0 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . initial setup = 4 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . payload setup = 55 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . stage-in = 0 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . payload execution = 25004 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . stage-out = 3 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | . log creation = 0 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,548 | INFO     | ..............................
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | 
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | job summary report
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | --------------------------------------------------
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | PanDA job id: 6898175061
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | task id: 47556161
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | errors: (none)
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | pilot state: finished 
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | transexitcode: 0
[2025-11-27 07:05:29] 2025-11-27 12:04:50,993 | INFO     | exeerrorcode: 0
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | exeerrordiag: 
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | exitcode: 0
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | exitmsg: OK
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | cpuconsumptiontime: 137273 s
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | nevents: 1000
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | neventsw: 0
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | pid: 1122271
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | pgrp: 1122271
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | corecount: 8
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | event service: False
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 22: 2284321, 32: 2284611, 33: 2284639, 25063: 2321033, 25067: 2330029, 25070: 2330085, 25079: 2330395}
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | --------------------------------------------------
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | 
[2025-11-27 07:05:29] 2025-11-27 12:04:50,995 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,043 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | job 6898175061 has completed (purged errors)
[2025-11-27 07:05:29] 2025-11-27 12:04:51,044 | INFO     | overall cleanup function is called
[2025-11-27 07:05:29] 2025-11-27 12:04:52,065 | INFO     | --- collectZombieJob: --- 10, [1122271]
[2025-11-27 07:05:29] 2025-11-27 12:04:52,065 | INFO     | zombie collector waiting for pid 1122271
[2025-11-27 07:05:29] 2025-11-27 12:04:52,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:05:29] 2025-11-27 12:04:52,065 | INFO     | collected zombie processes
[2025-11-27 07:05:29] 2025-11-27 12:04:52,065 | INFO     | will attempt to kill all subprocesses of pid=1122271
[2025-11-27 07:05:29] 2025-11-27 12:04:52,604 | INFO     | process IDs to be killed: [1122271] (in reverse order)
[2025-11-27 07:05:29] 2025-11-27 12:04:52,815 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:05:29] 2025-11-27 12:04:52,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:05:29] 2025-11-27 12:04:52,845 | INFO     | did not find any defunct processes belonging to 1122271
[2025-11-27 07:05:29] 2025-11-27 12:04:52,874 | INFO     | did not find any defunct processes belonging to 1122271
[2025-11-27 07:05:29] 2025-11-27 12:04:52,876 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:05:29] 2025-11-27 12:04:52,876 | INFO     | ready for new job
[2025-11-27 07:05:29] 2025-11-27 12:04:52,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:05:29] 2025-11-27 12:04:52,878 | INFO     | ***************************************
[2025-11-27 07:05:29] 2025-11-27 12:04:52,881 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:05:29] 2025-11-27 12:04:52,881 | INFO     | ***************************************
[2025-11-27 07:05:29] 2025-11-27 12:04:52,881 | INFO     | 
[2025-11-27 07:05:29] 2025-11-27 12:04:52,886 | INFO     | architecture information:
[2025-11-27 07:05:29] 2025-11-27 12:04:52,886 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:05:29] 2025-11-27 12:04:52,905 | INFO     | cat /etc/os-release:
[2025-11-27 07:05:29] NAME="CentOS Linux"
[2025-11-27 07:05:29] VERSION="7 (Core)"
[2025-11-27 07:05:29] ID="centos"
[2025-11-27 07:05:29] ID_LIKE="rhel fedora"
[2025-11-27 07:05:29] VERSION_ID="7"
[2025-11-27 07:05:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:05:29] ANSI_COLOR="0;31"
[2025-11-27 07:05:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:05:29] HOME_URL="https://www.centos.org/"
[2025-11-27 07:05:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:05:29] 
[2025-11-27 07:05:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:05:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:05:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:05:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:05:29] 
[2025-11-27 07:05:29] 2025-11-27 12:04:52,905 | INFO     | ***************************************
[2025-11-27 07:05:29] 2025-11-27 12:04:53,408 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-27 07:05:29] 2025-11-27 12:04:53,426 | INFO     | sufficient remaining disk space (162018623488 B)
[2025-11-27 07:05:29] 2025-11-27 12:04:53,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:05:29] 2025-11-27 12:04:53,426 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:05:29] 2025-11-27 12:04:53,426 | INFO     | update_server=False
[2025-11-27 07:05:29] 2025-11-27 12:04:53,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:05:29] 2025-11-27 12:04:53,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:05:29] 2025-11-27 12:04:53,427 | INFO     | aborting loop
[2025-11-27 07:05:29] 2025-11-27 12:04:53,627 | INFO     | all job control threads have been joined
[2025-11-27 07:05:29] 2025-11-27 12:04:54,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:05:29] 2025-11-27 12:04:54,059 | INFO     | all payload control threads have been joined
[2025-11-27 07:05:29] 2025-11-27 12:04:54,431 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:54,433 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:54,492 | INFO     | all data control threads have been joined
[2025-11-27 07:05:29] 2025-11-27 12:04:54,624 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:54,632 | INFO     | [job] control thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:54,719 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,064 | INFO     | [payload] control thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,088 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,145 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,160 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,355 | INFO     | [job] validate thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,369 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,389 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,498 | INFO     | [data] control thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:55,617 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:05:29] 2025-11-27 12:04:56,029 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:56,623 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:04:56,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:05:29] 2025-11-27 12:05:00,914 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:05:29] 2025-11-27 12:05:21,747 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:05:29] 2025-11-27 12:05:22,523 | INFO     | 25158s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 07:05:29] 2025-11-27 12:05:22,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895988148032)>', '<ExcThread(monitor, started 139895196608256)>']
[2025-11-27 07:05:29] 2025-11-27 12:05:24,273 | INFO     | PID=1071536 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:05:29] 2025-11-27 12:05:24,273 | INFO     | .. there are 63 such processes running
[2025-11-27 07:05:29] 2025-11-27 12:05:24,274 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:05:29] 2025-11-27 12:05:24,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:05:29] 2025-11-27 12:05:24,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:05:29] 2025-11-27 12:05:24,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:05:29] 2025-11-27 12:05:24,274 | INFO     | [monitor] control thread has ended
[2025-11-27 07:05:29] 2025-11-27 12:05:27,779 | INFO     | all workflow threads have been joined
[2025-11-27 07:05:29] 2025-11-27 12:05:27,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:05:29] 2025-11-27 12:05:27,780 | INFO     | traces error code: 0
[2025-11-27 07:05:29] 2025-11-27 12:05:27,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:05:29] 2025-11-27 12:05:27,919 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:05:29] 2025-11-27 12:05:27,956 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:05:29] 2025-11-27 12:05:27,973 [wrapper] pilotpid: 1071536
[2025-11-27 07:05:29] 2025-11-27 12:05:27,986 [wrapper] Pilot exit status: 0
[2025-11-27 07:05:29] 2025-11-27 12:05:28,088 [wrapper] pandaids: 6898175061
[2025-11-27 07:05:29] 2025-11-27 12:05:28,531 [wrapper] cleanup supervisor_pilot 3884449 1071537
[2025-11-27 07:05:29] 2025-11-27 12:05:28,559 [wrapper] Test setup, not cleaning
[2025-11-27 07:05:29] 2025-11-27 12:05:28,581 [wrapper] apfmon messages muted
[2025-11-27 07:05:29] 2025-11-27 12:05:28,585 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:05:29] 2025-11-27 12:05:28,588 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:05:29]  *** Error codes and diagnostics ***
[2025-11-27 07:05:29]     "exeErrorCode": 0,
[2025-11-27 07:05:29]     "exeErrorDiag": "",
[2025-11-27 07:05:29]     "pilotErrorCode": 0,
[2025-11-27 07:05:29]     "pilotErrorDiag": "",
[2025-11-27 07:05:29]  *** Listing of results directory ***
[2025-11-27 07:05:29] total 1319392
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 07:05:29] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:05:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-27 07:05:29] -rw-r--r--. 2 boincer umatlas 409686165 Nov 27 00:04 EVNT.47483658._002453.pool.root.1
[2025-11-27 07:05:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 07:05:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-27 07:05:29] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:04 input.tar.gz
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:04 pandaJob.out
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas    991570 Nov 27 00:05 agis_schedconf.cvmfs.json
[2025-11-27 07:05:29] drwx------. 5 boincer umatlas      4096 Nov 27 00:05 pilot3
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas       532 Nov 27 06:57 boinc_task_state.xml
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas 927658138 Nov 27 07:04 HITS.47556161._004353.pool.root.1
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas      1061 Nov 27 07:04 memory_monitor_summary.json
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 07:04 init_data.xml
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas   1682565 Nov 27 07:04 log.47556161._004353.job.log.tgz.1
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas      8598 Nov 27 07:04 heartbeat.json
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas        95 Nov 27 07:05 pilot_heartbeat.json
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:05 boinc_mmap_file
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas      4942 Nov 27 07:05 pilotlog.txt
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas        28 Nov 27 07:05 wrapper_checkpoint.txt
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas   3208616 Nov 27 07:05 log.47556161._004353.job.log.1
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas       353 Nov 27 07:05 output.list
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:05 runtime_log
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas   4915200 Nov 27 07:05 result.tar.gz
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas      9351 Nov 27 07:05 runtime_log.err
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas       661 Nov 27 07:05 JpcKDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbsMKDmfadQ7m.diag
[2025-11-27 07:05:29] -rw-r--r--. 1 boincer umatlas     21378 Nov 27 07:05 stderr.txt
[2025-11-27 07:05:29] HITS file was successfully produced:
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas 927658138 Nov 27 07:04 shared/HITS.pool.root.1
[2025-11-27 07:05:29]  *** Contents of shared directory: ***
[2025-11-27 07:05:29] total 1311412
[2025-11-27 07:05:29] -rw-r--r--. 2 boincer umatlas 409686165 Nov 27 00:04 ATLAS.root_0
[2025-11-27 07:05:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-27 07:05:29] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:04 input.tar.gz
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas 927658138 Nov 27 07:04 HITS.pool.root.1
[2025-11-27 07:05:29] -rw-------. 1 boincer umatlas   4915200 Nov 27 07:05 result.tar.gz
07:05:30 (1051297): run_atlas exited; CPU time 137723.307393
07:05:30 (1051297): called boinc_finish(0)

</stderr_txt>
]]>

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