Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:53 (1076545): wrapper (7.7.26015): starting
00:01:53 (1076545): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:01:53] Arguments: --nthreads 8
[2025-11-27 00:01:53] Threads: 8
[2025-11-27 00:01:53] Checking for CVMFS
[2025-11-27 00:01:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:56] 2.13.3.0 16090 30995 439320 153347 1 590 30305161 32935937 74742 16776704 0 442324411 99.629 398721813 52086 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:56] CVMFS is ok
[2025-11-27 00:01:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:56] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:56] Checking for apptainer binary...
[2025-11-27 00:01:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:56] Running /usr/bin/apptainer --version
[2025-11-27 00:01:56] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:56] c7-9-15.aglt2.org
[2025-11-27 00:01:56] apptainer works
[2025-11-27 00:01:56] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:01:56] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:01:56] Starting ATLAS job with PandaID=6897373037
[2025-11-27 00:01:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:15 (1076545): BOINC client no longer exists - exiting
07:20:15 (1076545): timer handler: client dead, exiting
07:21:33 (1184203): wrapper (7.7.26015): starting
07:21:33 (1184203): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 07:21:33] Arguments: --nthreads 9
[2025-11-27 07:21:33] Threads: 9
[2025-11-27 07:21:33] This job has been restarted, cleaning up previous attempt
[2025-11-27 07:21:34] Checking for CVMFS
[2025-11-27 07:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:21:34] 2.13.3.0 16090 31435 416452 153364 3 594 32811448 32935936 61658 16776704 0 449680498 99.631 406360735 52228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 07:21:34] CVMFS is ok
[2025-11-27 07:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:21:34] Further information can be found at the LHC@home message board.
[2025-11-27 07:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:21:34] Checking for apptainer binary...
[2025-11-27 07:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:21:34] Running /usr/bin/apptainer --version
[2025-11-27 07:21:34] apptainer version 1.4.4-1.el9
[2025-11-27 07:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:21:34] c7-9-15.aglt2.org
[2025-11-27 07:21:34] apptainer works
[2025-11-27 07:21:34] Set ATHENA_PROC_NUMBER=9
[2025-11-27 07:21:34] Set ATHENA_CORE_NUMBER=9
[2025-11-27 07:21:34] Starting ATLAS job with PandaID=6897373037
[2025-11-27 07:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:59:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:59:19] 2025-11-27 21:58:26,621 | INFO     | time since job start (34601s) is within the limit (172800.0s)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,250 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:59:19] 2025-11-27 21:58:28,255 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2419921875007
[2025-11-27 16:59:19] 2025-11-27 21:58:28,269 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6897373037/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,270 | INFO     | extracted standard info from prmon json
[2025-11-27 16:59:19] 2025-11-27 21:58:28,270 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:59:19] 2025-11-27 21:58:28,270 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:59:19] 2025-11-27 21:58:28,279 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:59:19] 2025-11-27 21:58:28,279 | INFO     | sum of square deviations: 56523229253.67559
[2025-11-27 16:59:19] 2025-11-27 21:58:28,288 | INFO     | sum of deviations: 440055978181.8731
[2025-11-27 16:59:19] 2025-11-27 21:58:28,301 | INFO     | mean x: 1764263397.5114639
[2025-11-27 16:59:19] 2025-11-27 21:58:28,301 | INFO     | mean y: 3031347.634920635
[2025-11-27 16:59:19] 2025-11-27 21:58:28,301 | INFO     | intersect: -13732465817.22135
[2025-11-27 16:59:19] 2025-11-27 21:58:28,301 | INFO     | chi2: 6.752841790942599
[2025-11-27 16:59:19] 2025-11-27 21:58:28,302 | INFO     | sum of square deviations: 55041279536.69938
[2025-11-27 16:59:19] 2025-11-27 21:58:28,300 | INFO     | monitor loop #1940: job 0:6897373037 is in state 'finished'
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | sum of deviations: 658538751609.4651
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | mean x: 1764263245.0231316
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | mean y: 3053836.65658363
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | intersect: -21105389220.400806
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | chi2: 3.001899124632306
[2025-11-27 16:59:19] 2025-11-27 21:58:28,306 | INFO     | current chi2=3.001899124632306 (change=55.54613572231663 %)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,307 | INFO     | sum of square deviations: 53585367126.76185
[2025-11-27 16:59:19] 2025-11-27 21:58:28,311 | INFO     | sum of deviations: 748397832301.7852
[2025-11-27 16:59:19] 2025-11-27 21:58:28,311 | INFO     | mean x: 1764263092.529623
[2025-11-27 16:59:19] 2025-11-27 21:58:28,311 | INFO     | mean y: 3063204.8312387792
[2025-11-27 16:59:19] 2025-11-27 21:58:28,311 | INFO     | intersect: -24637444920.003242
[2025-11-27 16:59:19] 2025-11-27 21:58:28,311 | INFO     | chi2: 1.73964932491733
[2025-11-27 16:59:19] 2025-11-27 21:58:28,311 | INFO     | current chi2=1.73964932491733 (change=42.04837495562365 %)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,312 | INFO     | sum of square deviations: 52155294227.412964
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | sum of deviations: 735708045337.3804
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | mean x: 1764262940.0326087
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | mean y: 3061851.53442029
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | intersect: -24883816044.561264
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | chi2: 1.7369337121029889
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | current chi2=1.7369337121029889 (change=0.15610116219658934 %)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,316 | INFO     | right removable region: 551
[2025-11-27 16:59:19] 2025-11-27 21:58:28,317 | INFO     | sum of square deviations: 55040860041.74398
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | sum of deviations: 317036494197.87506
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | mean x: 1764263550.0213523
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | mean y: 3043965.427046263
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | intersect: -10159150635.37782
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | chi2: 5.2543370369142615
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | current chi2=5.2543370369142615 (change=22.19072799896246 %)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,321 | INFO     | left removable region: 10
[2025-11-27 16:59:19] 2025-11-27 21:58:28,322 | INFO     | sum of square deviations: 49098894336.22921
[2025-11-27 16:59:19] 2025-11-27 21:58:28,325 | INFO     | sum of deviations: 566442877065.2477
[2025-11-27 16:59:19] 2025-11-27 21:58:28,325 | INFO     | mean x: 1764263214.5434382
[2025-11-27 16:59:19] 2025-11-27 21:58:28,325 | INFO     | mean y: 3079800.393715342
[2025-11-27 16:59:19] 2025-11-27 21:58:28,325 | INFO     | intersect: -20350827240.827812
[2025-11-27 16:59:19] 2025-11-27 21:58:28,326 | INFO     | chi2: 0.13131315532023355
[2025-11-27 16:59:19] 2025-11-27 21:58:28,326 | INFO     | current memory leak: 11.54 B/s (using 541 data points, chi2=0.13)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,326 | INFO     | could have reported an average CPU frequency of 3797 MHz (22 samples)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,326 | INFO     | ..............................
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . Timing measurements:
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . get job = 0 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . initial setup = 2 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . payload setup = 6 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . stage-in = 0 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . payload execution = 34560 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . stage-out = 3 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | . log creation = 0 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,327 | INFO     | ..............................
[2025-11-27 16:59:19] 2025-11-27 21:58:28,567 | INFO     | 
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | job summary report
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | --------------------------------------------------
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | PanDA job id: 6897373037
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | task id: 47556161
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | errors: (none)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | pilot state: finished 
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | transexitcode: 0
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | exeerrorcode: 0
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | exeerrordiag: 
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | exitcode: 0
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | exitmsg: OK
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | cpuconsumptiontime: 137359 s
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | nevents: 1000
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | neventsw: 0
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | pid: 1299634
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | pgrp: 1299634
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | corecount: 9
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | event service: False
[2025-11-27 16:59:19] 2025-11-27 21:58:28,568 | INFO     | sizes: {0: 2283437, 1: 2284294, 5: 2284556, 11: 2284612, 34570: 2324963, 34574: 2333959, 34577: 2334143, 34587: 2334389}
[2025-11-27 16:59:19] 2025-11-27 21:58:28,569 | INFO     | --------------------------------------------------
[2025-11-27 16:59:19] 2025-11-27 21:58:28,569 | INFO     | 
[2025-11-27 16:59:19] 2025-11-27 21:58:28,569 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,588 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,589 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,589 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,589 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:59:19] 2025-11-27 21:58:28,589 | INFO     | job 6897373037 has completed (purged errors)
[2025-11-27 16:59:19] 2025-11-27 21:58:28,589 | INFO     | overall cleanup function is called
[2025-11-27 16:59:19] 2025-11-27 21:58:29,602 | INFO     | --- collectZombieJob: --- 10, [1299634]
[2025-11-27 16:59:19] 2025-11-27 21:58:29,602 | INFO     | zombie collector waiting for pid 1299634
[2025-11-27 16:59:19] 2025-11-27 21:58:29,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:59:19] 2025-11-27 21:58:29,603 | INFO     | collected zombie processes
[2025-11-27 16:59:19] 2025-11-27 21:58:29,603 | INFO     | will attempt to kill all subprocesses of pid=1299634
[2025-11-27 16:59:19] 2025-11-27 21:58:30,132 | INFO     | process IDs to be killed: [1299634] (in reverse order)
[2025-11-27 16:59:19] 2025-11-27 21:58:30,372 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:59:19] 2025-11-27 21:58:30,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:59:19] 2025-11-27 21:58:30,430 | INFO     | did not find any defunct processes belonging to 1299634
[2025-11-27 16:59:19] 2025-11-27 21:58:30,459 | INFO     | did not find any defunct processes belonging to 1299634
[2025-11-27 16:59:19] 2025-11-27 21:58:30,470 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:59:19] 2025-11-27 21:58:30,471 | INFO     | ready for new job
[2025-11-27 16:59:19] 2025-11-27 21:58:30,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:59:19] 2025-11-27 21:58:30,473 | INFO     | ***************************************
[2025-11-27 16:59:19] 2025-11-27 21:58:30,473 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:59:19] 2025-11-27 21:58:30,473 | INFO     | ***************************************
[2025-11-27 16:59:19] 2025-11-27 21:58:30,473 | INFO     | 
[2025-11-27 16:59:19] 2025-11-27 21:58:30,487 | INFO     | architecture information:
[2025-11-27 16:59:19] 2025-11-27 21:58:30,488 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:59:19] 2025-11-27 21:58:30,512 | INFO     | cat /etc/os-release:
[2025-11-27 16:59:19] NAME="CentOS Linux"
[2025-11-27 16:59:19] VERSION="7 (Core)"
[2025-11-27 16:59:19] ID="centos"
[2025-11-27 16:59:19] ID_LIKE="rhel fedora"
[2025-11-27 16:59:19] VERSION_ID="7"
[2025-11-27 16:59:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:59:19] ANSI_COLOR="0;31"
[2025-11-27 16:59:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:59:19] HOME_URL="https://www.centos.org/"
[2025-11-27 16:59:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:59:19] 
[2025-11-27 16:59:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:59:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:59:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:59:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:59:19] 
[2025-11-27 16:59:19] 2025-11-27 21:58:30,513 | INFO     | ***************************************
[2025-11-27 16:59:19] 2025-11-27 21:58:31,016 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-11-27 16:59:19] 2025-11-27 21:58:31,039 | INFO     | sufficient remaining disk space (63190335488 B)
[2025-11-27 16:59:19] 2025-11-27 21:58:31,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:59:19] 2025-11-27 21:58:31,039 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:59:19] 2025-11-27 21:58:31,039 | INFO     | update_server=False
[2025-11-27 16:59:19] 2025-11-27 21:58:31,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:59:19] 2025-11-27 21:58:31,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:59:19] 2025-11-27 21:58:31,131 | INFO     | all job control threads have been joined
[2025-11-27 16:59:19] 2025-11-27 21:58:31,388 | INFO     | all data control threads have been joined
[2025-11-27 16:59:19] 2025-11-27 21:58:31,663 | INFO     | all payload control threads have been joined
[2025-11-27 16:59:19] 2025-11-27 21:58:31,816 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:59:19] 2025-11-27 21:58:31,817 | INFO     | aborting loop
[2025-11-27 16:59:19] 2025-11-27 21:58:32,045 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,140 | INFO     | [job] control thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,178 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,218 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,314 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,395 | INFO     | [data] control thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,415 | INFO     | [job] validate thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,571 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,668 | INFO     | [payload] control thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,727 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,822 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:32,853 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:33,046 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:33,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:59:19] 2025-11-27 21:58:33,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:59:19] 2025-11-27 21:58:34,408 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:37,140 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:59:19] 2025-11-27 21:58:46,826 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:59:19] 2025-11-27 21:58:48,640 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393705989952)>', '<ExcThread(monitor, started 140393068877568)>']
[2025-11-27 16:59:19] 2025-11-27 21:58:53,666 | INFO     | all workflow threads have been joined
[2025-11-27 16:59:19] 2025-11-27 21:58:53,666 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:59:19] 2025-11-27 21:58:53,667 | INFO     | traces error code: 0
[2025-11-27 16:59:19] 2025-11-27 21:58:53,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:59:19] 2025-11-27 21:59:00,275 | INFO     | PID=1223129 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:59:19] 2025-11-27 21:59:00,276 | INFO     | .. there are 100 such processes running
[2025-11-27 16:59:19] 2025-11-27 21:59:00,276 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:59:19] 2025-11-27 21:59:00,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:59:19] 2025-11-27 21:59:00,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:59:19] 2025-11-27 21:59:00,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:59:19] 2025-11-27 21:59:00,276 | INFO     | [monitor] control thread has ended
[2025-11-27 16:59:19] 2025-11-27 21:59:00,407 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:59:19] 2025-11-27 21:59:00,410 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:59:19] 2025-11-27 21:59:00,412 [wrapper] pilotpid: 1223129
[2025-11-27 16:59:19] 2025-11-27 21:59:00,415 [wrapper] Pilot exit status: 0
[2025-11-27 16:59:19] 2025-11-27 21:59:00,465 [wrapper] pandaids: 6897373037 6897373037
[2025-11-27 16:59:19] 2025-11-27 21:59:00,663 [wrapper] cleanup supervisor_pilot 2356957 1223130
[2025-11-27 16:59:19] 2025-11-27 21:59:00,670 [wrapper] Test setup, not cleaning
[2025-11-27 16:59:19] 2025-11-27 21:59:00,698 [wrapper] apfmon messages muted
[2025-11-27 16:59:19] 2025-11-27 21:59:00,701 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:59:19] 2025-11-27 21:59:00,715 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:59:19]  *** Error codes and diagnostics ***
[2025-11-27 16:59:19]     "exeErrorCode": 0,
[2025-11-27 16:59:19]     "exeErrorDiag": "",
[2025-11-27 16:59:19]     "pilotErrorCode": 0,
[2025-11-27 16:59:19]     "pilotErrorDiag": "",
[2025-11-27 16:59:19]  *** Listing of results directory ***
[2025-11-27 16:59:19] total 1720192
[2025-11-27 16:59:19] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 16:59:19] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:59:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 16:59:19] -rw-r--r--. 3 boincer umatlas 410447936 Nov 27 00:01 EVNT.47483658._002213.pool.root.1
[2025-11-27 16:59:19] -rw-r--r--. 3 boincer umatlas 410447936 Nov 27 00:01 ATLAS.root_0
[2025-11-27 16:59:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 16:59:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 16:59:19] -rw-r--r--. 2 boincer umatlas    590110 Nov 27 00:01 input.tar.gz
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 07:21 pandaJob.out
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas        57 Nov 27 07:21 setup.sh.local
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas    991566 Nov 27 07:21 agis_schedconf.cvmfs.json
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:48 boinc_task_state.xml
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 16:56 init_data.xml
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas 924406172 Nov 27 16:57 HITS.47556161._001965.pool.root.1
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas        96 Nov 27 16:58 pilot_heartbeat.json
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas      1051 Nov 27 16:58 memory_monitor_summary.json
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas   1886782 Nov 27 16:58 log.47556161._001965.job.log.tgz.1
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas      8581 Nov 27 16:58 heartbeat.json
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas       824 Nov 27 16:59 pilotlog.txt
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas   4232695 Nov 27 16:59 log.47556161._001965.job.log.1
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas       353 Nov 27 16:59 output.list
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:59 runtime_log
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas   6144000 Nov 27 16:59 result.tar.gz
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas       784 Nov 27 16:59 YZtNDmKVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRUJKDmKeIcHm.diag
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas      9441 Nov 27 16:59 runtime_log.err
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:59 wrapper_checkpoint.txt
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:59 boinc_mmap_file
[2025-11-27 16:59:19] -rw-r--r--. 1 boincer umatlas     23625 Nov 27 16:59 stderr.txt
[2025-11-27 16:59:19] HITS file was successfully produced:
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas 924406172 Nov 27 16:57 shared/HITS.pool.root.1
[2025-11-27 16:59:19]  *** Contents of shared directory: ***
[2025-11-27 16:59:19] total 1310180
[2025-11-27 16:59:19] -rw-r--r--. 3 boincer umatlas 410447936 Nov 27 00:01 ATLAS.root_0
[2025-11-27 16:59:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 16:59:19] -rw-r--r--. 2 boincer umatlas    590110 Nov 27 00:01 input.tar.gz
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas 924406172 Nov 27 16:57 HITS.pool.root.1
[2025-11-27 16:59:19] -rw-------. 1 boincer umatlas   6144000 Nov 27 16:59 result.tar.gz
16:59:20 (1184203): run_atlas exited; CPU time 137738.671873
16:59:20 (1184203): called boinc_finish(0)

</stderr_txt>
]]>

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