Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:18 (11360): wrapper (7.7.26015): starting
23:54:18 (11360): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:54:18] Arguments: --nthreads 8
[2025-11-26 23:54:18] Threads: 8
[2025-11-26 23:54:18] Checking for CVMFS
[2025-11-26 23:54:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:54:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:54:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:54:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:54:18] 2.11.2.0 2830 55455 85164 153347 0 81 19662965 20275200 1 130560 0 11904196 99.791 3348239 28299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 23:54:18] CVMFS is ok
[2025-11-26 23:54:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:54:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:54:18] Further information can be found at the LHC@home message board.
[2025-11-26 23:54:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:54:18] Checking for apptainer binary...
[2025-11-26 23:54:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:54:18] Running /usr/bin/apptainer --version
[2025-11-26 23:54:18] apptainer version 1.3.2-1.el7
[2025-11-26 23:54:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:54:20] c-204-14.aglt2.org
[2025-11-26 23:54:20] apptainer works
[2025-11-26 23:54:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:54:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:54:20] Starting ATLAS job with PandaID=6898177477
[2025-11-26 23:54:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:07:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:07:10] 2025-11-27 17:06:34,399 | INFO     | time since job start (43916s) is within the limit (172800.0s)
[2025-11-27 12:07:10] 2025-11-27 17:06:35,565 | INFO     | monitor loop #3227: job 0:6898177477 is in state 'finished'
[2025-11-27 12:07:10] 2025-11-27 17:06:35,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:07:10] 2025-11-27 17:06:36,406 | INFO     | time since job start (43918s) is within the limit (172800.0s)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,795 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 12:07:10] 2025-11-27 17:06:37,802 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.0
[2025-11-27 12:07:10] 2025-11-27 17:06:37,805 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898177477/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,806 | INFO     | extracted standard info from prmon json
[2025-11-27 12:07:10] 2025-11-27 17:06:37,806 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:07:10] 2025-11-27 17:06:37,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:07:10] 2025-11-27 17:06:37,818 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:07:10] 2025-11-27 17:06:37,819 | INFO     | sum of square deviations: 115737846301.3112
[2025-11-27 12:07:10] 2025-11-27 17:06:37,830 | INFO     | sum of deviations: 726045560387.5107
[2025-11-27 12:07:10] 2025-11-27 17:06:37,830 | INFO     | mean x: 1764241240.161111
[2025-11-27 12:07:10] 2025-11-27 17:06:37,830 | INFO     | mean y: 3224511.211111111
[2025-11-27 12:07:10] 2025-11-27 17:06:37,831 | INFO     | intersect: -11064196914.07438
[2025-11-27 12:07:10] 2025-11-27 17:06:37,831 | INFO     | chi2: 7.221551550634331
[2025-11-27 12:07:10] 2025-11-27 17:06:37,832 | INFO     | sum of square deviations: 113343490769.11046
[2025-11-27 12:07:10] 2025-11-27 17:06:37,843 | INFO     | sum of deviations: 1026097764765.1146
[2025-11-27 12:07:10] 2025-11-27 17:06:37,843 | INFO     | mean x: 1764241087.6657343
[2025-11-27 12:07:10] 2025-11-27 17:06:37,843 | INFO     | mean y: 3243624.6699300697
[2025-11-27 12:07:10] 2025-11-27 17:06:37,843 | INFO     | intersect: -15968417599.7781
[2025-11-27 12:07:10] 2025-11-27 17:06:37,844 | INFO     | chi2: 3.414920190023088
[2025-11-27 12:07:10] 2025-11-27 17:06:37,844 | INFO     | current chi2=3.414920190023088 (change=52.712098417089805 %)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,845 | INFO     | sum of square deviations: 110982391674.37914
[2025-11-27 12:07:10] 2025-11-27 17:06:37,856 | INFO     | sum of deviations: 1158513330058.0693
[2025-11-27 12:07:10] 2025-11-27 17:06:37,856 | INFO     | mean x: 1764240935.1704226
[2025-11-27 12:07:10] 2025-11-27 17:06:37,856 | INFO     | mean y: 3252177.0985915493
[2025-11-27 12:07:10] 2025-11-27 17:06:37,856 | INFO     | intersect: -18413152533.53167
[2025-11-27 12:07:10] 2025-11-27 17:06:37,857 | INFO     | chi2: 2.562428531457852
[2025-11-27 12:07:10] 2025-11-27 17:06:37,857 | INFO     | current chi2=2.562428531457852 (change=24.963735933151405 %)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,857 | INFO     | right removable region: 709
[2025-11-27 12:07:10] 2025-11-27 17:06:37,858 | INFO     | sum of square deviations: 113343200409.11037
[2025-11-27 12:07:10] 2025-11-27 17:06:37,868 | INFO     | sum of deviations: 505444044060.0337
[2025-11-27 12:07:10] 2025-11-27 17:06:37,868 | INFO     | mean x: 1764241392.6657343
[2025-11-27 12:07:10] 2025-11-27 17:06:37,869 | INFO     | mean y: 3238537.5524475523
[2025-11-27 12:07:10] 2025-11-27 17:06:37,869 | INFO     | intersect: -7864240949.42522
[2025-11-27 12:07:10] 2025-11-27 17:06:37,869 | INFO     | chi2: 5.015663925167418
[2025-11-27 12:07:10] 2025-11-27 17:06:37,870 | INFO     | current chi2=5.015663925167418 (change=30.545895989251097 %)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,870 | INFO     | sum of square deviations: 110981942166.38878
[2025-11-27 12:07:10] 2025-11-27 17:06:37,881 | INFO     | sum of deviations: 459929667155.37177
[2025-11-27 12:07:10] 2025-11-27 17:06:37,881 | INFO     | mean x: 1764241545.1661973
[2025-11-27 12:07:10] 2025-11-27 17:06:37,881 | INFO     | mean y: 3241475.6154929576
[2025-11-27 12:07:10] 2025-11-27 17:06:37,881 | INFO     | intersect: -7308101350.170009
[2025-11-27 12:07:10] 2025-11-27 17:06:37,882 | INFO     | chi2: 4.973833514408584
[2025-11-27 12:07:10] 2025-11-27 17:06:37,882 | INFO     | current chi2=4.973833514408584 (change=0.8339954865982738 %)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,882 | INFO     | left removable region: 20
[2025-11-27 12:07:10] 2025-11-27 17:06:37,883 | INFO     | sum of square deviations: 101422955306.82425
[2025-11-27 12:07:10] 2025-11-27 17:06:37,892 | INFO     | sum of deviations: 843297738142.407
[2025-11-27 12:07:10] 2025-11-27 17:06:37,893 | INFO     | mean x: 1764241514.6763425
[2025-11-27 12:07:10] 2025-11-27 17:06:37,893 | INFO     | mean y: 3275234.93904209
[2025-11-27 12:07:10] 2025-11-27 17:06:37,893 | INFO     | intersect: -14665799180.834646
[2025-11-27 12:07:10] 2025-11-27 17:06:37,894 | INFO     | chi2: 0.18305464091673598
[2025-11-27 12:07:10] 2025-11-27 17:06:37,894 | INFO     | current memory leak: 8.31 B/s (using 689 data points, chi2=0.18)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,894 | INFO     | could have reported an average CPU frequency of 2163 MHz (28 samples)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | ..............................
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . Timing measurements:
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . get job = 0 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . initial setup = 2 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . payload setup = 8 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . stage-in = 0 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . payload execution = 43878 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . stage-out = 3 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,895 | INFO     | . log creation = 0 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,896 | INFO     | ..............................
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | 
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | job summary report
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | --------------------------------------------------
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | PanDA job id: 6898177477
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | task id: 47556173
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | errors: (none)
[2025-11-27 12:07:10] 2025-11-27 17:06:37,988 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:07:10] 2025-11-27 17:06:37,989 | INFO     | pilot state: finished 
[2025-11-27 12:07:10] 2025-11-27 17:06:37,989 | INFO     | transexitcode: 0
[2025-11-27 12:07:10] 2025-11-27 17:06:37,989 | INFO     | exeerrorcode: 0
[2025-11-27 12:07:10] 2025-11-27 17:06:37,989 | INFO     | exeerrordiag: 
[2025-11-27 12:07:10] 2025-11-27 17:06:37,989 | INFO     | exitcode: 0
[2025-11-27 12:07:10] 2025-11-27 17:06:37,989 | INFO     | exitmsg: OK
[2025-11-27 12:07:10] 2025-11-27 17:06:37,990 | INFO     | cpuconsumptiontime: 339824 s
[2025-11-27 12:07:10] 2025-11-27 17:06:37,990 | INFO     | nevents: 1000
[2025-11-27 12:07:10] 2025-11-27 17:06:37,990 | INFO     | neventsw: 0
[2025-11-27 12:07:10] 2025-11-27 17:06:37,990 | INFO     | pid: 21624
[2025-11-27 12:07:10] 2025-11-27 17:06:37,990 | INFO     | pgrp: 21624
[2025-11-27 12:07:10] 2025-11-27 17:06:37,990 | INFO     | corecount: 8
[2025-11-27 12:07:10] 2025-11-27 17:06:37,991 | INFO     | event service: False
[2025-11-27 12:07:10] 2025-11-27 17:06:37,991 | INFO     | sizes: {0: 2284031, 1: 2284286, 7: 2284548, 12: 2284576, 43891: 2330357, 43895: 2339351, 43897: 2339535, 43903: 2339559}
[2025-11-27 12:07:10] 2025-11-27 17:06:37,991 | INFO     | --------------------------------------------------
[2025-11-27 12:07:10] 2025-11-27 17:06:37,991 | INFO     | 
[2025-11-27 12:07:10] 2025-11-27 17:06:37,991 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:07:10] 2025-11-27 17:06:38,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:07:10] 2025-11-27 17:06:38,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,022 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:07:10] 2025-11-27 17:06:38,022 | INFO     | job 6898177477 has completed (purged errors)
[2025-11-27 12:07:10] 2025-11-27 17:06:38,022 | INFO     | overall cleanup function is called
[2025-11-27 12:07:10] 2025-11-27 17:06:39,038 | INFO     | --- collectZombieJob: --- 10, [21624]
[2025-11-27 12:07:10] 2025-11-27 17:06:39,039 | INFO     | zombie collector waiting for pid 21624
[2025-11-27 12:07:10] 2025-11-27 17:06:39,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:07:10] 2025-11-27 17:06:39,040 | INFO     | collected zombie processes
[2025-11-27 12:07:10] 2025-11-27 17:06:39,040 | INFO     | will attempt to kill all subprocesses of pid=21624
[2025-11-27 12:07:10] 2025-11-27 17:06:39,133 | INFO     | process IDs to be killed: [21624] (in reverse order)
[2025-11-27 12:07:10] 2025-11-27 17:06:39,192 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:07:10] 2025-11-27 17:06:39,193 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:07:10] 2025-11-27 17:06:39,197 | INFO     | did not find any defunct processes belonging to 21624
[2025-11-27 12:07:10] 2025-11-27 17:06:39,199 | INFO     | did not find any defunct processes belonging to 21624
[2025-11-27 12:07:10] 2025-11-27 17:06:39,202 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:07:10] 2025-11-27 17:06:39,203 | INFO     | ready for new job
[2025-11-27 12:07:10] 2025-11-27 17:06:39,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:07:10] 2025-11-27 17:06:39,207 | INFO     | ***************************************
[2025-11-27 12:07:10] 2025-11-27 17:06:39,208 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:07:10] 2025-11-27 17:06:39,208 | INFO     | ***************************************
[2025-11-27 12:07:10] 2025-11-27 17:06:39,208 | INFO     | 
[2025-11-27 12:07:10] 2025-11-27 17:06:39,209 | INFO     | architecture information:
[2025-11-27 12:07:10] 2025-11-27 17:06:39,209 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:07:10] 2025-11-27 17:06:39,226 | INFO     | cat /etc/os-release:
[2025-11-27 12:07:10] NAME="CentOS Linux"
[2025-11-27 12:07:10] VERSION="7 (Core)"
[2025-11-27 12:07:10] ID="centos"
[2025-11-27 12:07:10] ID_LIKE="rhel fedora"
[2025-11-27 12:07:10] VERSION_ID="7"
[2025-11-27 12:07:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:07:10] ANSI_COLOR="0;31"
[2025-11-27 12:07:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:07:10] HOME_URL="https://www.centos.org/"
[2025-11-27 12:07:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:07:10] 
[2025-11-27 12:07:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:07:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:07:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:07:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:07:10] 
[2025-11-27 12:07:10] 2025-11-27 17:06:39,226 | INFO     | ***************************************
[2025-11-27 12:07:10] 2025-11-27 17:06:39,730 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:07:10] 2025-11-27 17:06:39,751 | INFO     | sufficient remaining disk space (17480810496 B)
[2025-11-27 12:07:10] 2025-11-27 17:06:39,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:07:10] 2025-11-27 17:06:39,751 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:07:10] 2025-11-27 17:06:39,752 | INFO     | update_server=False
[2025-11-27 12:07:10] 2025-11-27 17:06:39,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:07:10] 2025-11-27 17:06:39,752 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:07:10] 2025-11-27 17:06:39,753 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:07:10] 2025-11-27 17:06:39,753 | INFO     | aborting loop
[2025-11-27 12:07:10] 2025-11-27 17:06:40,236 | INFO     | all payload control threads have been joined
[2025-11-27 12:07:10] 2025-11-27 17:06:40,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:07:10] 2025-11-27 17:06:40,740 | INFO     | all data control threads have been joined
[2025-11-27 12:07:10] 2025-11-27 17:06:40,751 | INFO     | all job control threads have been joined
[2025-11-27 12:07:10] 2025-11-27 17:06:40,755 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:40,758 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:40,759 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,241 | INFO     | [payload] control thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,340 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,748 | INFO     | [data] control thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,756 | INFO     | [job] control thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,770 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,772 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,818 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:41,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:07:10] 2025-11-27 17:06:42,151 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:42,242 | INFO     | [job] validate thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:42,245 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:42,260 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:42,294 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:45,934 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:07:10] 2025-11-27 17:06:50,475 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:07:10] 2025-11-27 17:06:52,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140355435841344)>', '<ExcThread(monitor, started 140354598713088)>']
[2025-11-27 12:07:10] 2025-11-27 17:06:57,165 | INFO     | all workflow threads have been joined
[2025-11-27 12:07:10] 2025-11-27 17:06:57,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:07:10] 2025-11-27 17:06:57,171 | INFO     | traces error code: 0
[2025-11-27 12:07:10] 2025-11-27 17:06:57,172 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:07:10] 2025-11-27 17:07:09,623 | INFO     | PID=15131 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 12:07:10] 2025-11-27 17:07:09,624 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:07:10] 2025-11-27 17:07:09,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:07:10] 2025-11-27 17:07:09,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:07:10] 2025-11-27 17:07:09,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:07:10] 2025-11-27 17:07:09,624 | INFO     | [monitor] control thread has ended
[2025-11-27 12:07:10] 2025-11-27 17:07:09,745 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:07:10] 2025-11-27 17:07:09,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:07:10] 2025-11-27 17:07:09,779 [wrapper] pilotpid: 15131
[2025-11-27 12:07:10] 2025-11-27 17:07:09,783 [wrapper] Pilot exit status: 0
[2025-11-27 12:07:10] 2025-11-27 17:07:09,800 [wrapper] pandaids: 6898177477
[2025-11-27 12:07:10] 2025-11-27 17:07:09,851 [wrapper] cleanup supervisor_pilot 14007 15132
[2025-11-27 12:07:10] 2025-11-27 17:07:09,857 [wrapper] Test setup, not cleaning
[2025-11-27 12:07:10] 2025-11-27 17:07:09,862 [wrapper] apfmon messages muted
[2025-11-27 12:07:10] 2025-11-27 17:07:09,867 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:07:10] 2025-11-27 17:07:09,872 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:07:10]  *** Error codes and diagnostics ***
[2025-11-27 12:07:10]     "exeErrorCode": 0,
[2025-11-27 12:07:10]     "exeErrorDiag": "",
[2025-11-27 12:07:10]     "pilotErrorCode": 0,
[2025-11-27 12:07:10]     "pilotErrorDiag": "",
[2025-11-27 12:07:10]  *** Listing of results directory ***
[2025-11-27 12:07:10] total 1308080
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 12:07:10] -rwx------ 1 boincer umatlas     36292 Nov 25 23:03 runpilot2-wrapper.sh
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:03 queuedata.json
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas       100 Nov 26 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:07:10] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 23:54 run_atlas
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas       105 Nov 26 23:54 job.xml
[2025-11-27 12:07:10] -rw-r--r-- 2 boincer umatlas 408307960 Nov 26 23:54 EVNT.47483658._003172.pool.root.1
[2025-11-27 12:07:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 23:54 start_atlas.sh
[2025-11-27 12:07:10] drwxrwx--x 2 boincer umatlas      4096 Nov 26 23:54 shared
[2025-11-27 12:07:10] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 23:54 input.tar.gz
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas         0 Nov 26 23:54 boinc_lockfile
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas      2782 Nov 26 23:54 pandaJob.out
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas        57 Nov 26 23:54 setup.sh.local
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas    991570 Nov 26 23:54 agis_schedconf.cvmfs.json
[2025-11-27 12:07:10] drwx------ 5 boincer umatlas      4096 Nov 26 23:54 pilot3
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas       532 Nov 27 11:54 boinc_task_state.xml
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 12:02 init_data.xml
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas 911193561 Nov 27 12:05 HITS.47556173._001281.pool.root.1
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas      1060 Nov 27 12:06 memory_monitor_summary.json
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas   1516240 Nov 27 12:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas   1976936 Nov 27 12:06 log.47556173._001281.job.log.tgz.1
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas      8666 Nov 27 12:06 heartbeat.json
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas        95 Nov 27 12:07 pilot_heartbeat.json
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas       745 Nov 27 12:07 pilotlog.txt
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas   6048215 Nov 27 12:07 log.47556173._001281.job.log.1
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas        29 Nov 27 12:07 wrapper_checkpoint.txt
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas       353 Nov 27 12:07 output.list
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas       620 Nov 27 12:07 runtime_log
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas   8048640 Nov 27 12:07 result.tar.gz
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 12:07 runtime_log.err
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas       668 Nov 27 12:07 ObvLDmovLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbtJKDmYAjjZm.diag
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 12:07 boinc_mmap_file
[2025-11-27 12:07:10] -rw-r--r-- 1 boincer umatlas     21310 Nov 27 12:07 stderr.txt
[2025-11-27 12:07:10] HITS file was successfully produced:
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas 911193561 Nov 27 12:05 shared/HITS.pool.root.1
[2025-11-27 12:07:10]  *** Contents of shared directory: ***
[2025-11-27 12:07:10] total 1297044
[2025-11-27 12:07:10] -rw-r--r-- 2 boincer umatlas 408307960 Nov 26 23:54 ATLAS.root_0
[2025-11-27 12:07:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 23:54 start_atlas.sh
[2025-11-27 12:07:10] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 23:54 input.tar.gz
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas 911193561 Nov 27 12:05 HITS.pool.root.1
[2025-11-27 12:07:10] -rw------- 1 boincer umatlas   8048640 Nov 27 12:07 result.tar.gz
12:07:11 (11360): run_atlas exited; CPU time 337561.575496
12:07:11 (11360): called boinc_finish(0)

</stderr_txt>
]]>

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