Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:54:03 (2276040): wrapper (7.7.26015): starting
01:54:03 (2276040): wrapper: running run_atlas (--nthreads 6)
[2025-11-28 01:54:03] Arguments: --nthreads 6
[2025-11-28 01:54:03] Threads: 6
[2025-11-28 01:54:03] Checking for CVMFS
[2025-11-28 01:54:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 01:54:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 01:54:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 01:54:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 01:54:04] 2.13.3.0 1560231 3319 78408 153375 1 81 19276507 20971521 916 130560 0 2459344 99.989 134862 17 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-11-28 01:54:04] CVMFS is ok
[2025-11-28 01:54:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 01:54:04] Checking for apptainer binary...
[2025-11-28 01:54:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 01:54:04] Running /usr/bin/apptainer --version
[2025-11-28 01:54:04] apptainer version 1.4.4-1.el9
[2025-11-28 01:54:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 01:54:04] testio005
[2025-11-28 01:54:04] apptainer works
[2025-11-28 01:54:04] Set ATHENA_PROC_NUMBER=6
[2025-11-28 01:54:04] Set ATHENA_CORE_NUMBER=6
[2025-11-28 01:54:04] Starting ATLAS job with PandaID=6898175904
[2025-11-28 01:54:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:37:44]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:37:44] 2025-11-28 03:37:04,229 | INFO     | monitor loop #2773: job 0:6898175904 is in state 'finished'
[2025-11-28 12:37:44] 2025-11-28 03:37:04,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,114 | INFO     | time since job start (38551s) is within the limit (172800.0s)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 12:37:44] 2025-11-28 03:37:05,326 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3288.881875
[2025-11-28 12:37:44] 2025-11-28 03:37:05,330 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6898175904/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,330 | INFO     | extracted standard info from prmon json
[2025-11-28 12:37:44] 2025-11-28 03:37:05,330 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:37:44] 2025-11-28 03:37:05,330 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:37:44] 2025-11-28 03:37:05,341 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:37:44] 2025-11-28 03:37:05,342 | INFO     | sum of square deviations: 78275865127.87175
[2025-11-28 12:37:44] 2025-11-28 03:37:05,351 | INFO     | sum of deviations: 864564549593.0715
[2025-11-28 12:37:44] 2025-11-28 03:37:05,351 | INFO     | mean x: 1764281746.5142405
[2025-11-28 12:37:44] 2025-11-28 03:37:05,351 | INFO     | mean y: 2687470.4920886075
[2025-11-28 12:37:44] 2025-11-28 03:37:05,351 | INFO     | intersect: -19483976152.30618
[2025-11-28 12:37:44] 2025-11-28 03:37:05,352 | INFO     | chi2: 9.31052513285091
[2025-11-28 12:37:44] 2025-11-28 03:37:05,353 | INFO     | sum of square deviations: 76432707732.87094
[2025-11-28 12:37:44] 2025-11-28 03:37:05,361 | INFO     | sum of deviations: 1055822829529.0631
[2025-11-28 12:37:44] 2025-11-28 03:37:05,361 | INFO     | mean x: 1764281594.014354
[2025-11-28 12:37:44] 2025-11-28 03:37:05,361 | INFO     | mean y: 2703291.215311005
[2025-11-28 12:37:44] 2025-11-28 03:37:05,362 | INFO     | intersect: -24368653421.52315
[2025-11-28 12:37:44] 2025-11-28 03:37:05,362 | INFO     | chi2: 6.29517798700842
[2025-11-28 12:37:44] 2025-11-28 03:37:05,362 | INFO     | current chi2=6.29517798700842 (change=32.38643473721211 %)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,363 | INFO     | sum of square deviations: 74618713675.36975
[2025-11-28 12:37:44] 2025-11-28 03:37:05,371 | INFO     | sum of deviations: 1150535566674.5925
[2025-11-28 12:37:44] 2025-11-28 03:37:05,371 | INFO     | mean x: 1764281441.5144694
[2025-11-28 12:37:44] 2025-11-28 03:37:05,372 | INFO     | mean y: 2711220.8231511256
[2025-11-28 12:37:44] 2025-11-28 03:37:05,372 | INFO     | intersect: -27200498913.799404
[2025-11-28 12:37:44] 2025-11-28 03:37:05,372 | INFO     | chi2: 4.896188240496886
[2025-11-28 12:37:44] 2025-11-28 03:37:05,372 | INFO     | current chi2=4.896188240496886 (change=22.223196062107824 %)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,373 | INFO     | right removable region: 621
[2025-11-28 12:37:44] 2025-11-28 03:37:05,373 | INFO     | sum of square deviations: 76432702242.87094
[2025-11-28 12:37:44] 2025-11-28 03:37:05,381 | INFO     | sum of deviations: 672123069798.3436
[2025-11-28 12:37:44] 2025-11-28 03:37:05,381 | INFO     | mean x: 1764281899.014354
[2025-11-28 12:37:44] 2025-11-28 03:37:05,381 | INFO     | mean y: 2703383.2950558215
[2025-11-28 12:37:44] 2025-11-28 03:37:05,381 | INFO     | intersect: -15511788858.352499
[2025-11-28 12:37:44] 2025-11-28 03:37:05,382 | INFO     | chi2: 6.580421467664921
[2025-11-28 12:37:44] 2025-11-28 03:37:05,382 | INFO     | current chi2=6.580421467664921 (change=29.32276779483891 %)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,383 | INFO     | sum of square deviations: 74618702695.36975
[2025-11-28 12:37:44] 2025-11-28 03:37:05,391 | INFO     | sum of deviations: 519126307906.89276
[2025-11-28 12:37:44] 2025-11-28 03:37:05,391 | INFO     | mean x: 1764282051.5144694
[2025-11-28 12:37:44] 2025-11-28 03:37:05,391 | INFO     | mean y: 2716241.1784565914
[2025-11-28 12:37:44] 2025-11-28 03:37:05,391 | INFO     | intersect: -12271488407.59705
[2025-11-28 12:37:44] 2025-11-28 03:37:05,392 | INFO     | chi2: 4.9988062579085755
[2025-11-28 12:37:44] 2025-11-28 03:37:05,392 | INFO     | current chi2=4.9988062579085755 (change=24.03516579489833 %)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,392 | INFO     | left removable region: 20
[2025-11-28 12:37:44] 2025-11-28 03:37:05,393 | INFO     | sum of square deviations: 67313131848.86542
[2025-11-28 12:37:44] 2025-11-28 03:37:05,400 | INFO     | sum of deviations: 720348455126.8997
[2025-11-28 12:37:44] 2025-11-28 03:37:05,400 | INFO     | mean x: 1764282021.014975
[2025-11-28 12:37:44] 2025-11-28 03:37:05,400 | INFO     | mean y: 2748093.9001663895
[2025-11-28 12:37:44] 2025-11-28 03:37:05,400 | INFO     | intersect: -18877636659.252914
[2025-11-28 12:37:44] 2025-11-28 03:37:05,401 | INFO     | chi2: 0.3241609284814651
[2025-11-28 12:37:44] 2025-11-28 03:37:05,401 | INFO     | current memory leak: 10.70 B/s (using 601 data points, chi2=0.32)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | could have reported an average CPU frequency of 3291 MHz (24 samples)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | ..............................
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . Timing measurements:
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . get job = 0 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . initial setup = 6 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . payload setup = 6 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . stage-in = 0 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . payload execution = 38510 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . stage-out = 6 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | . log creation = 0 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,402 | INFO     | ..............................
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | 
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | job summary report
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | --------------------------------------------------
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | PanDA job id: 6898175904
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | task id: 47556173
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | errors: (none)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | pilot state: finished 
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | transexitcode: 0
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | exeerrorcode: 0
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | exeerrordiag: 
[2025-11-28 12:37:44] 2025-11-28 03:37:05,651 | INFO     | exitcode: 0
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | exitmsg: OK
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | cpuconsumptiontime: 223020 s
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | nevents: 1000
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | neventsw: 0
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | pid: 2286541
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | pgrp: 2286541
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | corecount: 6
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | event service: False
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 11: 2284610, 38521: 2327259, 38529: 2336253, 38532: 2336437, 38536: 2336683}
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | --------------------------------------------------
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | 
[2025-11-28 12:37:44] 2025-11-28 03:37:05,652 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-28 12:37:44] 2025-11-28 03:37:05,669 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,669 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,670 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 03:37:05,671 | INFO     | job 6898175904 has completed (purged errors)
[2025-11-28 12:37:44] 2025-11-28 03:37:05,671 | INFO     | overall cleanup function is called
[2025-11-28 12:37:44] 2025-11-28 03:37:06,685 | INFO     | --- collectZombieJob: --- 10, [2286541]
[2025-11-28 12:37:44] 2025-11-28 03:37:06,685 | INFO     | zombie collector waiting for pid 2286541
[2025-11-28 12:37:44] 2025-11-28 03:37:06,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:37:44] 2025-11-28 03:37:06,686 | INFO     | collected zombie processes
[2025-11-28 12:37:44] 2025-11-28 03:37:06,686 | INFO     | will attempt to kill all subprocesses of pid=2286541
[2025-11-28 12:37:44] 2025-11-28 03:37:06,793 | INFO     | process IDs to be killed: [2286541] (in reverse order)
[2025-11-28 12:37:44] 2025-11-28 03:37:06,835 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:37:44] 2025-11-28 03:37:06,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:37:44] 2025-11-28 03:37:06,838 | INFO     | did not find any defunct processes belonging to 2286541
[2025-11-28 12:37:44] 2025-11-28 03:37:06,841 | INFO     | did not find any defunct processes belonging to 2286541
[2025-11-28 12:37:44] 2025-11-28 03:37:06,842 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:37:44] 2025-11-28 03:37:06,842 | INFO     | ready for new job
[2025-11-28 12:37:44] 2025-11-28 03:37:06,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:37:44] 2025-11-28 03:37:06,845 | INFO     | ***************************************
[2025-11-28 12:37:44] 2025-11-28 03:37:06,845 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:37:44] 2025-11-28 03:37:06,845 | INFO     | ***************************************
[2025-11-28 12:37:44] 2025-11-28 03:37:06,845 | INFO     | 
[2025-11-28 12:37:44] 2025-11-28 03:37:06,846 | INFO     | architecture information:
[2025-11-28 12:37:44] 2025-11-28 03:37:06,846 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:37:44] 2025-11-28 03:37:06,859 | INFO     | cat /etc/os-release:
[2025-11-28 12:37:44] NAME="CentOS Linux"
[2025-11-28 12:37:44] VERSION="7 (Core)"
[2025-11-28 12:37:44] ID="centos"
[2025-11-28 12:37:44] ID_LIKE="rhel fedora"
[2025-11-28 12:37:44] VERSION_ID="7"
[2025-11-28 12:37:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:37:44] ANSI_COLOR="0;31"
[2025-11-28 12:37:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:37:44] HOME_URL="https://www.centos.org/"
[2025-11-28 12:37:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:37:44] 
[2025-11-28 12:37:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:37:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:37:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:37:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:37:44] 
[2025-11-28 12:37:44] 2025-11-28 03:37:06,859 | INFO     | ***************************************
[2025-11-28 12:37:44] 2025-11-28 03:37:07,362 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-28 12:37:44] 2025-11-28 03:37:07,377 | INFO     | sufficient remaining disk space (88723161088 B)
[2025-11-28 12:37:44] 2025-11-28 03:37:07,377 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:37:44] 2025-11-28 03:37:07,377 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:37:44] 2025-11-28 03:37:07,377 | INFO     | update_server=False
[2025-11-28 12:37:44] 2025-11-28 03:37:07,377 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:37:44] 2025-11-28 03:37:07,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 03:37:07,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 03:37:07,564 | INFO     | all payload control threads have been joined
[2025-11-28 12:37:44] 2025-11-28 03:37:07,736 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 03:37:07,736 | INFO     | aborting loop
[2025-11-28 12:37:44] 2025-11-28 03:37:07,757 | INFO     | all data control threads have been joined
[2025-11-28 12:37:44] 2025-11-28 03:37:08,120 | INFO     | all job control threads have been joined
[2025-11-28 12:37:44] 2025-11-28 03:37:08,383 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,383 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,516 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,559 | INFO     | [job] validate thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,569 | INFO     | [payload] control thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,605 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 03:37:08,741 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:08,760 | INFO     | [data] control thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:09,051 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:09,113 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:09,125 | INFO     | [job] control thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:09,232 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:09,282 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:10,710 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:11,378 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:37:44] 2025-11-28 03:37:38,118 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:37:44] 2025-11-28 03:37:38,289 | INFO     | PID=2279825 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 12:37:44] 2025-11-28 03:37:38,289 | INFO     | .. there are 2 such processes running
[2025-11-28 12:37:44] 2025-11-28 03:37:38,289 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:37:44] 2025-11-28 03:37:38,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:37:44] 2025-11-28 03:37:38,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:37:44] 2025-11-28 03:37:38,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766560798528)>', '<ExcThread(monitor, started 139766045583104)>']
[2025-11-28 12:37:44] 2025-11-28 03:37:39,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:37:44] 2025-11-28 03:37:39,295 | INFO     | [monitor] control thread has ended
[2025-11-28 12:37:44] 2025-11-28 03:37:43,802 | INFO     | all workflow threads have been joined
[2025-11-28 12:37:44] 2025-11-28 03:37:43,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:37:44] 2025-11-28 03:37:43,803 | INFO     | traces error code: 0
[2025-11-28 12:37:44] 2025-11-28 03:37:43,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:37:44] 2025-11-28 03:37:43,910 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:37:44] 2025-11-28 03:37:43,913 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:37:44] 2025-11-28 03:37:43,915 [wrapper] pilotpid: 2279825
[2025-11-28 12:37:44] 2025-11-28 03:37:43,917 [wrapper] Pilot exit status: 0
[2025-11-28 12:37:44] 2025-11-28 03:37:43,926 [wrapper] pandaids: 6898175904
[2025-11-28 12:37:44] 2025-11-28 03:37:43,956 [wrapper] cleanup supervisor_pilot 2383457 2279826
[2025-11-28 12:37:44] 2025-11-28 03:37:43,958 [wrapper] Test setup, not cleaning
[2025-11-28 12:37:44] 2025-11-28 03:37:43,961 [wrapper] apfmon messages muted
[2025-11-28 12:37:44] 2025-11-28 03:37:43,963 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:37:44] 2025-11-28 03:37:43,966 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:37:44]  *** Error codes and diagnostics ***
[2025-11-28 12:37:44]     "exeErrorCode": 0,
[2025-11-28 12:37:44]     "exeErrorDiag": "",
[2025-11-28 12:37:44]     "pilotErrorCode": 0,
[2025-11-28 12:37:44]     "pilotErrorDiag": "",
[2025-11-28 12:37:44]  *** Listing of results directory ***
[2025-11-28 12:37:44] total 1336180
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc    576529 Nov 26 12:33 pilot3.tar.gz
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc      5112 Nov 26 12:57 queuedata.json
[2025-11-28 12:37:44] -rwx------. 1 boinc boinc     36292 Nov 26 12:58 runpilot2-wrapper.sh
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc       100 Nov 28 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:37:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 01:54 run_atlas
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc       105 Nov 28 01:54 job.xml
[2025-11-28 12:37:44] -rw-r--r--. 2 boinc boinc 413314743 Nov 28 01:54 EVNT.47483658._003168.pool.root.1
[2025-11-28 12:37:44] -rw-r--r--. 2 boinc boinc     15847 Nov 28 01:54 start_atlas.sh
[2025-11-28 12:37:44] drwxrwx--x. 2 boinc boinc        68 Nov 28 01:54 shared
[2025-11-28 12:37:44] -rw-r--r--. 2 boinc boinc    590103 Nov 28 01:54 input.tar.gz
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc         0 Nov 28 01:54 boinc_lockfile
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc      2785 Nov 28 01:54 pandaJob.out
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc    991564 Nov 28 01:54 agis_schedconf.cvmfs.json
[2025-11-28 12:37:44] drwx------. 5 boinc boinc      4096 Nov 28 01:54 pilot3
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc      9372 Nov 28 07:05 init_data.xml
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc       533 Nov 28 12:28 boinc_task_state.xml
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc 937014773 Nov 28 12:36 HITS.47556173._001250.pool.root.1
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc      1046 Nov 28 12:36 memory_monitor_summary.json
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc   1516240 Nov 28 12:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc   1663812 Nov 28 12:36 log.47556173._001250.job.log.tgz.1
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc        95 Nov 28 12:36 pilot_heartbeat.json
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc      8576 Nov 28 12:37 heartbeat.json
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc        29 Nov 28 12:37 wrapper_checkpoint.txt
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc      8192 Nov 28 12:37 boinc_mmap_file
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc      4823 Nov 28 12:37 pilotlog.txt
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc   5337559 Nov 28 12:37 log.47556173._001250.job.log.1
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc       353 Nov 28 12:37 output.list
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc       620 Nov 28 12:37 runtime_log
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc   7024640 Nov 28 12:37 result.tar.gz
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc      8776 Nov 28 12:37 runtime_log.err
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc       651 Nov 28 12:37 7RHMDmlqLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBtJKDmtmZsun.diag
[2025-11-28 12:37:44] -rw-r--r--. 1 boinc boinc     21002 Nov 28 12:37 stderr.txt
[2025-11-28 12:37:44] HITS file was successfully produced:
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc 937014773 Nov 28 12:36 shared/HITS.pool.root.1
[2025-11-28 12:37:44]  *** Contents of shared directory: ***
[2025-11-28 12:37:44] total 1326140
[2025-11-28 12:37:44] -rw-r--r--. 2 boinc boinc 413314743 Nov 28 01:54 ATLAS.root_0
[2025-11-28 12:37:44] -rw-r--r--. 2 boinc boinc     15847 Nov 28 01:54 start_atlas.sh
[2025-11-28 12:37:44] -rw-r--r--. 2 boinc boinc    590103 Nov 28 01:54 input.tar.gz
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc 937014773 Nov 28 12:36 HITS.pool.root.1
[2025-11-28 12:37:44] -rw-------. 1 boinc boinc   7024640 Nov 28 12:37 result.tar.gz
12:37:45 (2276040): run_atlas exited; CPU time 222933.189183
12:37:45 (2276040): called boinc_finish(0)

</stderr_txt>
]]>

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