Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:57 (1153236): wrapper (7.7.26015): starting
20:26:57 (1153236): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 20:26:57] Arguments: --nthreads 12
[2025-11-26 20:26:57] Threads: 12
[2025-11-26 20:26:57] Checking for CVMFS
[2025-11-26 20:26:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:26:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:26:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:26:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:26:58] 2.11.5.0 4038285 29248 160848 153347 0 370 30687204 45568001 25179 130560 0 295233299 99.817 166018070 17761 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 20:26:58] CVMFS is ok
[2025-11-26 20:26:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:26:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:26:58] Further information can be found at the LHC@home message board.
[2025-11-26 20:26:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:26:58] Checking for apptainer binary...
[2025-11-26 20:26:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:26:58] Running /usr/bin/apptainer --version
[2025-11-26 20:26:58] apptainer version 1.4.1-1.el9
[2025-11-26 20:26:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:26:58] wns0061.triumf.lcg
[2025-11-26 20:26:58] apptainer works
[2025-11-26 20:26:58] Set ATHENA_PROC_NUMBER=12
[2025-11-26 20:26:58] Set ATHENA_CORE_NUMBER=12
[2025-11-26 20:26:58] Starting ATLAS job with PandaID=6892549351
[2025-11-26 20:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:31:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | could have reported an average CPU frequency of 2712 MHz (4 samples)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | ..............................
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . Timing measurements:
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . get job = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . initial setup = 2 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . payload setup = 4 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . stage-in = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . payload execution = 48 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . stage-out = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . log creation = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | ..............................
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 20:31:12] 2025-11-27 04:30:20,576 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892549351/pilotlog.txt
[2025-11-26 20:31:12] 2025-11-27 04:30:20,585 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 20:31:12] - Log from pilotlog.txt -
[2025-11-26 20:31:12] 2025-11-27 04:30:20,572 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892549351/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | INFO     | extracted standard info from prmon json
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 20:31:12] 2025-11-27 04:30:20,574 | WARNING  | wrong length of table data, x=[1764217649.0], y=[1089.0] (must be same and length>=4)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | could have reported an average CPU frequency of 2712 MHz (4 samples)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | ..............................
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . Timing measurements:
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . get job = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . initial setup = 2 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . payload setup = 4 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . stage-in = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . payload execution = 48 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . stage-out = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . log creation = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | ..............................
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 20:31:12] 2025-11-27 04:30:20,576 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892549351/pilotlog.txt
[2025-11-26 20:31:12] 2025-11-27 04:30:20,586 | WARNING  | 
[2025-11-26 20:31:12] [begin log extracts]
[2025-11-26 20:31:12] - Log from pilotlog.txt -
[2025-11-26 20:31:12] 2025-11-27 04:30:20,572 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892549351/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | INFO     | extracted standard info from prmon json
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 20:31:12] 2025-11-27 04:30:20,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 20:31:12] 2025-11-27 04:30:20,574 | WARNING  | wrong length of table data, x=[1764217649.0], y=[1089.0] (must be same and length>=4)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | could have reported an average CPU frequency of 2712 MHz (4 samples)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | ..............................
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . Timing measurements:
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . get job = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . initial setup = 2 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . payload setup = 4 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . stage-in = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . payload execution = 48 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . stage-out = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | . log creation = 0 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | ..............................
[2025-11-26 20:31:12] 2025-11-27 04:30:20,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 20:31:12] 2025-11-27 04:30:20,576 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892549351/pilotlog.txt
[2025-11-26 20:31:12] [end log extracts]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,586 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,586 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | 
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | job summary report
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | --------------------------------------------------
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | PanDA job id: 6892549351
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | task id: 47493029
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 20:28:10,050 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 20:31:12] 2025-11-27 04:30:20,646 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | pilot state: failed 
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | transexitcode: 65
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | exeerrorcode: 65
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | exitcode: 65
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | cpuconsumptiontime: 41 s
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | nevents: 0
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | neventsw: 0
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | pid: 1163479
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | pgrp: 1163479
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | corecount: 12
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | event service: False
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | sizes: {0: 2284073, 1: 2284328, 4: 2284590, 11: 2284618, 56: 2310124, 57: 2314414, 59: 2314630, 180: 2314796}
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | --------------------------------------------------
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | 
[2025-11-26 20:31:12] 2025-11-27 04:30:20,647 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 20:31:12] 2025-11-27 04:30:20,663 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | job 6892549351 has completed (purged errors)
[2025-11-26 20:31:12] 2025-11-27 04:30:20,665 | INFO     | overall cleanup function is called
[2025-11-26 20:31:12] 2025-11-27 04:30:21,673 | INFO     | --- collectZombieJob: --- 10, [1163479]
[2025-11-26 20:31:12] 2025-11-27 04:30:21,673 | INFO     | zombie collector waiting for pid 1163479
[2025-11-26 20:31:12] 2025-11-27 04:30:21,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:31:12] 2025-11-27 04:30:21,673 | INFO     | collected zombie processes
[2025-11-26 20:31:12] 2025-11-27 04:30:21,673 | INFO     | will attempt to kill all subprocesses of pid=1163479
[2025-11-26 20:31:12] 2025-11-27 04:30:21,845 | INFO     | process IDs to be killed: [1163479] (in reverse order)
[2025-11-26 20:31:12] 2025-11-27 04:30:21,911 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:31:12] 2025-11-27 04:30:21,911 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:31:12] 2025-11-27 04:30:21,918 | INFO     | did not find any defunct processes belonging to 1163479
[2025-11-26 20:31:12] 2025-11-27 04:30:21,924 | INFO     | did not find any defunct processes belonging to 1163479
[2025-11-26 20:31:12] 2025-11-27 04:30:21,925 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:31:12] 2025-11-27 04:30:21,925 | INFO     | ready for new job
[2025-11-26 20:31:12] 2025-11-27 04:30:21,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:31:12] 2025-11-27 04:30:21,926 | INFO     | ***************************************
[2025-11-26 20:31:12] 2025-11-27 04:30:21,927 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:31:12] 2025-11-27 04:30:21,927 | INFO     | ***************************************
[2025-11-26 20:31:12] 2025-11-27 04:30:21,927 | INFO     | 
[2025-11-26 20:31:12] 2025-11-27 04:30:21,928 | INFO     | architecture information:
[2025-11-26 20:31:12] 2025-11-27 04:30:21,929 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:31:12] 2025-11-27 04:30:21,938 | INFO     | cat /etc/os-release:
[2025-11-26 20:31:12] NAME="CentOS Linux"
[2025-11-26 20:31:12] VERSION="7 (Core)"
[2025-11-26 20:31:12] ID="centos"
[2025-11-26 20:31:12] ID_LIKE="rhel fedora"
[2025-11-26 20:31:12] VERSION_ID="7"
[2025-11-26 20:31:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:31:12] ANSI_COLOR="0;31"
[2025-11-26 20:31:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:31:12] HOME_URL="https://www.centos.org/"
[2025-11-26 20:31:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:31:12] 
[2025-11-26 20:31:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:31:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:31:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:31:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:31:12] 
[2025-11-26 20:31:12] 2025-11-27 04:30:21,939 | INFO     | ***************************************
[2025-11-26 20:31:12] 2025-11-27 04:30:22,443 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 20:31:12] 2025-11-27 04:30:22,604 | INFO     | sufficient remaining disk space (1838227128320 B)
[2025-11-26 20:31:12] 2025-11-27 04:30:22,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:31:12] 2025-11-27 04:30:22,604 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:31:12] 2025-11-27 04:30:22,604 | INFO     | update_server=False
[2025-11-26 20:31:12] 2025-11-27 04:30:22,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:31:12] 2025-11-27 04:30:22,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:31:12] 2025-11-27 04:30:22,932 | INFO     | all job control threads have been joined
[2025-11-26 20:31:12] 2025-11-27 04:30:22,963 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 20:31:12] 2025-11-27 04:30:22,963 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 20:31:12] 2025-11-27 04:30:22,963 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:31:12] 2025-11-27 04:30:22,963 | INFO     | will abort loop
[2025-11-26 20:31:12] 2025-11-27 04:30:22,978 | INFO     | all data control threads have been joined
[2025-11-26 20:31:12] 2025-11-27 04:30:23,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:31:12] 2025-11-27 04:30:23,610 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:23,610 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:23,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:31:12] 2025-11-27 04:30:23,897 | INFO     | all payload control threads have been joined
[2025-11-26 20:31:12] 2025-11-27 04:30:23,938 | INFO     | [job] control thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:23,969 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:23,984 | INFO     | [data] control thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,171 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,518 | INFO     | [job] validate thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,544 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,619 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,704 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,903 | INFO     | [payload] control thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:24,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:25,026 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:25,034 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:25,455 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:27,669 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:31:12] 2025-11-27 04:30:52,554 | INFO     | PID=1156900 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:31:12] 2025-11-27 04:30:52,554 | INFO     | .. there are 23 such processes running
[2025-11-26 20:31:12] 2025-11-27 04:30:52,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:31:12] 2025-11-27 04:30:52,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:31:12] 2025-11-27 04:30:52,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:31:12] 2025-11-27 04:31:06,277 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:31:12] 2025-11-27 04:31:07,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223345448768)>', '<ExcThread(monitor, started 140222780118784)>']
[2025-11-26 20:31:12] 2025-11-27 04:31:08,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:31:12] 2025-11-27 04:31:08,640 | INFO     | [monitor] control thread has ended
[2025-11-26 20:31:12] 2025-11-27 04:31:12,696 | INFO     | all workflow threads have been joined
[2025-11-26 20:31:12] 2025-11-27 04:31:12,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:31:12] 2025-11-27 04:31:12,697 | INFO     | traces error code: 0
[2025-11-26 20:31:12] 2025-11-27 04:31:12,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:31:12] 2025-11-27 04:31:12,818 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:31:12] 2025-11-27 04:31:12,820 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:31:12] 2025-11-27 04:31:12,822 [wrapper] pilotpid: 1156900
[2025-11-26 20:31:12] 2025-11-27 04:31:12,823 [wrapper] Pilot exit status: 0
[2025-11-26 20:31:12] 2025-11-27 04:31:12,830 [wrapper] pandaids: 6892549351
[2025-11-26 20:31:12] 2025-11-27 04:31:12,870 [wrapper] cleanup supervisor_pilot 1156906 1156901
[2025-11-26 20:31:12] 2025-11-27 04:31:12,872 [wrapper] Test setup, not cleaning
[2025-11-26 20:31:12] 2025-11-27 04:31:12,874 [wrapper] apfmon messages muted
[2025-11-26 20:31:12] 2025-11-27 04:31:12,876 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:31:12] 2025-11-27 04:31:12,877 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:31:12]  *** Error codes and diagnostics ***
[2025-11-26 20:31:12]     "exeErrorCode": 65,
[2025-11-26 20:31:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 20:31:12]     "pilotErrorCode": 1305,
[2025-11-26 20:31:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 20:31:12]  *** Listing of results directory ***
[2025-11-26 20:31:12] total 407824
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc    576529 Nov 19 00:32 pilot3.tar.gz
[2025-11-26 20:31:12] -rwx------. 1 boinc boinc     36292 Nov 19 00:52 runpilot2-wrapper.sh
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc      5112 Nov 19 00:52 queuedata.json
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc       100 Nov 26 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:31:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 20:26 run_atlas
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc       105 Nov 26 20:26 job.xml
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc      6596 Nov 26 20:26 init_data.xml
[2025-11-26 20:31:12] -rw-r--r--. 2 boinc boinc 413421491 Nov 26 20:26 EVNT.47493027._000359.pool.root.1
[2025-11-26 20:31:12] -rw-r--r--. 2 boinc boinc     15120 Nov 26 20:26 start_atlas.sh
[2025-11-26 20:31:12] drwxrwx--x. 2 boinc boinc      4096 Nov 26 20:26 shared
[2025-11-26 20:31:12] -rw-r--r--. 2 boinc boinc    590092 Nov 26 20:26 input.tar.gz
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc         0 Nov 26 20:26 boinc_lockfile
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc      2772 Nov 26 20:26 pandaJob.out
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc    991570 Nov 26 20:27 agis_schedconf.cvmfs.json
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc   1516240 Nov 26 20:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:31:12] drwx------. 5 boinc boinc      4096 Nov 26 20:27 pilot3
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc       523 Nov 26 20:28 boinc_task_state.xml
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc       969 Nov 26 20:28 memory_monitor_summary.json
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc     48516 Nov 26 20:28 log.47493029._003548.job.log.tgz.1
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc        95 Nov 26 20:30 pilot_heartbeat.json
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc     10327 Nov 26 20:30 heartbeat.json
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc      8192 Nov 26 20:31 boinc_mmap_file
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc        23 Nov 26 20:31 wrapper_checkpoint.txt
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc      5009 Nov 26 20:31 pilotlog.txt
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc     93386 Nov 26 20:31 log.47493029._003548.job.log.1
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc       186 Nov 26 20:31 output.list
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc       620 Nov 26 20:31 runtime_log
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc    163840 Nov 26 20:31 result.tar.gz
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc      8528 Nov 26 20:31 runtime_log.err
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc       645 Nov 26 20:31 7moKDmO6sf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm46GKDmHhStOm.diag
[2025-11-26 20:31:12] -rw-r--r--. 1 boinc boinc     22391 Nov 26 20:31 stderr.txt
[2025-11-26 20:31:12] No HITS result produced
[2025-11-26 20:31:12]  *** Contents of shared directory: ***
[2025-11-26 20:31:12] total 404492
[2025-11-26 20:31:12] -rw-r--r--. 2 boinc boinc 413421491 Nov 26 20:26 ATLAS.root_0
[2025-11-26 20:31:12] -rw-r--r--. 2 boinc boinc     15120 Nov 26 20:26 start_atlas.sh
[2025-11-26 20:31:12] -rw-r--r--. 2 boinc boinc    590092 Nov 26 20:26 input.tar.gz
[2025-11-26 20:31:12] -rw-------. 1 boinc boinc    163840 Nov 26 20:31 result.tar.gz
20:31:13 (1153236): run_atlas exited; CPU time 39.995467
20:31:13 (1153236): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN