Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:50:23 (2585763): wrapper (7.7.26015): starting
05:50:23 (2585763): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 05:50:23] Arguments: --nthreads 3
[2025-11-27 05:50:23] Threads: 3
[2025-11-27 05:50:23] Checking for CVMFS
[2025-11-27 05:50:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:50:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:50:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:50:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:50:23] 2.9.2.0 2210343 81 63804 153347 3 88 35852717 36864000 0 130560 0 1126853 99.998 4099 15014 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 05:50:23] CVMFS is ok
[2025-11-27 05:50:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:50:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:50:23] Further information can be found at the LHC@home message board.
[2025-11-27 05:50:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:50:23] Checking for apptainer binary...
[2025-11-27 05:50:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:50:24] Running /usr/bin/apptainer --version
[2025-11-27 05:50:24] apptainer version 1.4.1-1.1
[2025-11-27 05:50:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:50:24] thA335
[2025-11-27 05:50:24] apptainer works
[2025-11-27 05:50:24] Set ATHENA_PROC_NUMBER=3
[2025-11-27 05:50:24] Set ATHENA_CORE_NUMBER=3
[2025-11-27 05:50:24] Starting ATLAS job with PandaID=6897759756
[2025-11-27 05:50:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:54:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:54:42] 2025-11-27 04:53:53,834 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:54:42] 2025-11-27 04:53:53,834 | INFO     | update_server=False
[2025-11-27 05:54:42] 2025-11-27 04:53:53,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:54:42] 2025-11-27 04:53:53,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:54:42] 2025-11-27 04:53:53,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:54:42] 2025-11-27 04:53:53,834 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:54:42] 2025-11-27 04:53:53,888 | INFO     | all job control threads have been joined
[2025-11-27 05:54:42] 2025-11-27 04:53:54,611 | INFO     | all data control threads have been joined
[2025-11-27 05:54:42] 2025-11-27 04:53:54,638 | INFO     | all payload control threads have been joined
[2025-11-27 05:54:42] 2025-11-27 04:53:54,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:54:42] 2025-11-27 04:53:54,714 | INFO     | aborting loop
[2025-11-27 05:54:42] 2025-11-27 04:53:54,839 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:54,840 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:54,894 | INFO     | [job] control thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,326 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,430 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,606 | INFO     | [job] validate thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,617 | INFO     | [data] control thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,640 | INFO     | [payload] control thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,690 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,719 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,752 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:55,839 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:56,029 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:56,251 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:53:57,841 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:54:42] 2025-11-27 04:54:24,734 | INFO     | PID=2589495 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:54:42] 2025-11-27 04:54:24,735 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:54:42] 2025-11-27 04:54:24,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:54:42] 2025-11-27 04:54:24,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:54:42] 2025-11-27 04:54:35,841 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:54:42] 2025-11-27 04:54:37,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551032215360)>', '<ExcThread(monitor, started 140550162335488)>']
[2025-11-27 05:54:42] 2025-11-27 04:54:37,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:54:42] 2025-11-27 04:54:37,804 | INFO     | [monitor] control thread has ended
[2025-11-27 05:54:42] 2025-11-27 04:54:42,486 | INFO     | all workflow threads have been joined
[2025-11-27 05:54:42] 2025-11-27 04:54:42,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:54:42] 2025-11-27 04:54:42,486 | INFO     | traces error code: 0
[2025-11-27 05:54:42] 2025-11-27 04:54:42,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:54:42] 2025-11-27 04:54:42,535 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:54:42] 2025-11-27 04:54:42,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:54:42] 2025-11-27 04:54:42,541 [wrapper] pilotpid: 2589495
[2025-11-27 05:54:42] 2025-11-27 04:54:42,544 [wrapper] Pilot exit status: 0
[2025-11-27 05:54:42] 2025-11-27 04:54:42,551 [wrapper] pandaids: 6897759756
[2025-11-27 05:54:42] 2025-11-27 04:54:42,567 [wrapper] cleanup supervisor_pilot 2589501 2589496
[2025-11-27 05:54:42] 2025-11-27 04:54:42,570 [wrapper] Test setup, not cleaning
[2025-11-27 05:54:42] 2025-11-27 04:54:42,573 [wrapper] apfmon messages muted
[2025-11-27 05:54:42] 2025-11-27 04:54:42,576 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:54:42] 2025-11-27 04:54:42,579 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:54:42]  *** Error codes and diagnostics ***
[2025-11-27 05:54:42]     "exeErrorCode": 65,
[2025-11-27 05:54:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 05:54:42]     "pilotErrorCode": 1305,
[2025-11-27 05:54:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 05:54:42]  *** Listing of results directory ***
[2025-11-27 05:54:42] total 402520
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-27 05:54:42] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc       100 Nov 27 05:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:54:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 05:50 run_atlas
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc       105 Nov 27 05:50 job.xml
[2025-11-27 05:54:42] -rw-r--r-- 2 boinc boinc 407979321 Nov 27 05:50 EVNT.47483658._002327.pool.root.1
[2025-11-27 05:54:42] -rw-r--r-- 2 boinc boinc    590110 Nov 27 05:50 input.tar.gz
[2025-11-27 05:54:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:50 start_atlas.sh
[2025-11-27 05:54:42] drwxrwx--x 2 boinc boinc      4096 Nov 27 05:50 shared
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:50 boinc_setup_complete
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc      6196 Nov 27 05:50 init_data.xml
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:50 boinc_lockfile
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc      2783 Nov 27 05:50 pandaJob.out
[2025-11-27 05:54:42] -rw------- 1 boinc boinc    991570 Nov 27 05:50 agis_schedconf.cvmfs.json
[2025-11-27 05:54:42] -rw------- 1 boinc boinc   1516240 Nov 27 05:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:54:42] drwx------ 5 boinc boinc      4096 Nov 27 05:50 pilot3
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc       523 Nov 27 05:51 boinc_task_state.xml
[2025-11-27 05:54:42] -rw------- 1 boinc boinc       954 Nov 27 05:51 memory_monitor_summary.json
[2025-11-27 05:54:42] -rw------- 1 boinc boinc     55623 Nov 27 05:51 log.47556161._003091.job.log.tgz.1
[2025-11-27 05:54:42] -rw------- 1 boinc boinc        95 Nov 27 05:53 pilot_heartbeat.json
[2025-11-27 05:54:42] -rw------- 1 boinc boinc      8399 Nov 27 05:53 heartbeat.json
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc      8192 Nov 27 05:54 boinc_mmap_file
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc        23 Nov 27 05:54 wrapper_checkpoint.txt
[2025-11-27 05:54:42] -rw------- 1 boinc boinc      4752 Nov 27 05:54 pilotlog.txt
[2025-11-27 05:54:42] -rw------- 1 boinc boinc     93754 Nov 27 05:54 log.47556161._003091.job.log.1
[2025-11-27 05:54:42] -rw------- 1 boinc boinc       186 Nov 27 05:54 output.list
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc       620 Nov 27 05:54 runtime_log
[2025-11-27 05:54:42] -rw------- 1 boinc boinc    174080 Nov 27 05:54 result.tar.gz
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc      8744 Nov 27 05:54 runtime_log.err
[2025-11-27 05:54:42] -rw------- 1 boinc boinc       649 Nov 27 05:54 YutMDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMdJKDmOXoltn.diag
[2025-11-27 05:54:42] -rw-r--r-- 1 boinc boinc      7891 Nov 27 05:54 stderr.txt
[2025-11-27 05:54:42] No HITS result produced
[2025-11-27 05:54:42]  *** Contents of shared directory: ***
[2025-11-27 05:54:42] total 399192
[2025-11-27 05:54:42] -rw-r--r-- 2 boinc boinc 407979321 Nov 27 05:50 ATLAS.root_0
[2025-11-27 05:54:42] -rw-r--r-- 2 boinc boinc    590110 Nov 27 05:50 input.tar.gz
[2025-11-27 05:54:42] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:50 start_atlas.sh
[2025-11-27 05:54:42] -rw------- 1 boinc boinc    174080 Nov 27 05:54 result.tar.gz
05:54:44 (2585763): run_atlas exited; CPU time 32.001159
05:54:44 (2585763): called boinc_finish(0)

</stderr_txt>
]]>

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