Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:21 (1781815): wrapper (7.7.26015): starting
00:01:21 (1781815): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:01:21] Arguments: --nthreads 8
[2025-11-27 00:01:21] Threads: 8
[2025-11-27 00:01:21] Checking for CVMFS
[2025-11-27 00:01:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:25] 2.13.3.0 9438 31021 281432 153347 3 732 39941311 40960001 98109 16776704 0 440176921 99.756 267360244 47636 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:25] CVMFS is ok
[2025-11-27 00:01:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:25] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:25] Checking for apptainer binary...
[2025-11-27 00:01:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:25] Running /usr/bin/apptainer --version
[2025-11-27 00:01:25] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:25] c8-7-3.aglt2.org
[2025-11-27 00:01:25] apptainer works
[2025-11-27 00:01:25] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:01:25] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:01:25] Starting ATLAS job with PandaID=6898175879
[2025-11-27 00:01:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:14:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:14:30] 2025-11-27 16:13:38,857 | INFO     | monitor loop #2045: job 0:6898175879 is in state 'finished'
[2025-11-27 11:14:30] 2025-11-27 16:13:38,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:14:30] 2025-11-27 16:13:39,952 | INFO     | time since job start (40238s) is within the limit (172800.0s)
[2025-11-27 11:14:30] 2025-11-27 16:13:41,384 | INFO     | monitor loop #2046: job 0:6898175879 is in state 'finished'
[2025-11-27 11:14:30] 2025-11-27 16:13:41,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:14:30] 2025-11-27 16:13:43,892 | INFO     | monitor loop #2047: job 0:6898175879 is in state 'finished'
[2025-11-27 11:14:30] 2025-11-27 16:13:43,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:14:30] 2025-11-27 16:13:44,001 | INFO     | PID=1810862 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:14:30] 2025-11-27 16:13:44,001 | INFO     | .. there are 132 such processes running
[2025-11-27 11:14:30] 2025-11-27 16:13:45,002 | INFO     | time since job start (40244s) is within the limit (172800.0s)
[2025-11-27 11:14:30] 2025-11-27 16:13:46,413 | INFO     | monitor loop #2048: job 0:6898175879 is in state 'finished'
[2025-11-27 11:14:30] 2025-11-27 16:13:46,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:14:30] 2025-11-27 16:13:47,033 | INFO     | time since job start (40246s) is within the limit (172800.0s)
[2025-11-27 11:14:30] 2025-11-27 16:13:48,964 | INFO     | monitor loop #2049: job 0:6898175879 is in state 'finished'
[2025-11-27 11:14:30] 2025-11-27 16:13:48,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:14:30] 2025-11-27 16:13:49,040 | INFO     | time since job start (40248s) is within the limit (172800.0s)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,040 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:14:30] 2025-11-27 16:13:51,048 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.128304687501
[2025-11-27 11:14:30] 2025-11-27 16:13:51,052 | INFO     | time since job start (40250s) is within the limit (172800.0s)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,079 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6898175879/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,080 | INFO     | extracted standard info from prmon json
[2025-11-27 11:14:30] 2025-11-27 16:13:51,080 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:14:30] 2025-11-27 16:13:51,080 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:14:30] 2025-11-27 16:13:51,090 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:14:30] 2025-11-27 16:13:51,090 | INFO     | sum of square deviations: 86339297595.2804
[2025-11-27 11:14:30] 2025-11-27 16:13:51,100 | INFO     | sum of deviations: -1486602615792.26
[2025-11-27 11:14:30] 2025-11-27 16:13:51,100 | INFO     | mean x: 1764239984.108729
[2025-11-27 11:14:30] 2025-11-27 16:13:51,100 | INFO     | mean y: 2644349.975497703
[2025-11-27 11:14:30] 2025-11-27 16:13:51,100 | INFO     | intersect: 30379585653.754402
[2025-11-27 11:14:30] 2025-11-27 16:13:51,100 | INFO     | chi2: 60.64648614073539
[2025-11-27 11:14:30] 2025-11-27 16:13:51,101 | INFO     | sum of square deviations: 84371332669.08627
[2025-11-27 11:14:30] 2025-11-27 16:13:51,118 | INFO     | sum of deviations: -1291702748956.679
[2025-11-27 11:14:30] 2025-11-27 16:13:51,118 | INFO     | mean x: 1764239831.617284
[2025-11-27 11:14:30] 2025-11-27 16:13:51,118 | INFO     | mean y: 2659446.364197531
[2025-11-27 11:14:30] 2025-11-27 16:13:51,118 | INFO     | intersect: 27012703832.61217
[2025-11-27 11:14:30] 2025-11-27 16:13:51,119 | INFO     | chi2: 56.7103723912462
[2025-11-27 11:14:30] 2025-11-27 16:13:51,119 | INFO     | current chi2=56.7103723912462 (change=6.490258545820936 %)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,119 | INFO     | right removable region: 647
[2025-11-27 11:14:30] 2025-11-27 16:13:51,119 | INFO     | sum of square deviations: 84370891029.08624
[2025-11-27 11:14:30] 2025-11-27 16:13:51,126 | INFO     | sum of deviations: -1724650782850.8892
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | mean x: 1764240136.617284
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | mean y: 2662785.597222222
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | intersect: 36066026531.57225
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | chi2: 56.89818143744314
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | current chi2=56.89818143744314 (change=6.180580181667879 %)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | left removable region: 10
[2025-11-27 11:14:30] 2025-11-27 16:13:51,127 | INFO     | sum of square deviations: 80146692255.11787
[2025-11-27 11:14:30] 2025-11-27 16:13:51,140 | INFO     | sum of deviations: -1691227062969.8386
[2025-11-27 11:14:30] 2025-11-27 16:13:51,141 | INFO     | mean x: 1764240106.1365776
[2025-11-27 11:14:30] 2025-11-27 16:13:51,141 | INFO     | mean y: 2697519.147566719
[2025-11-27 11:14:30] 2025-11-27 16:13:51,141 | INFO     | intersect: 37231066265.51252
[2025-11-27 11:14:30] 2025-11-27 16:13:51,141 | INFO     | chi2: 49.5142679742457
[2025-11-27 11:14:30] 2025-11-27 16:13:51,141 | INFO     | current memory leak: -21.10 B/s (using 637 data points, chi2=49.51)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | could have reported an average CPU frequency of 3800 MHz (25 samples)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | ..............................
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . Timing measurements:
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . get job = 0 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . initial setup = 4 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . payload setup = 94 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . stage-in = 0 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . payload execution = 39896 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . stage-out = 13 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | . log creation = 6 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,146 | INFO     | ..............................
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | 
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | job summary report
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | --------------------------------------------------
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | PanDA job id: 6898175879
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | task id: 47556161
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | errors: (none)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:14:30] 2025-11-27 16:13:51,225 | INFO     | pilot state: finished 
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | transexitcode: 0
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | exeerrorcode: 0
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | exeerrordiag: 
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | exitcode: 0
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | exitmsg: OK
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | cpuconsumptiontime: 135236 s
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | nevents: 1000
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | neventsw: 0
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | pid: 1912447
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | pgrp: 1912447
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | corecount: 8
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | event service: False
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 24: 2284377, 35: 2284405, 46: 2284561, 56: 2284589, 67: 2284617, 72: 2284907, 78: 2284935, 39994: 2326681,
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | --------------------------------------------------
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | 
[2025-11-27 11:14:30] 2025-11-27 16:13:51,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-27 11:14:30] 2025-11-27 16:13:51,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:14:30] 2025-11-27 16:13:51,486 | INFO     | job 6898175879 has completed (purged errors)
[2025-11-27 11:14:30] 2025-11-27 16:13:51,486 | INFO     | overall cleanup function is called
[2025-11-27 11:14:30] 2025-11-27 16:13:52,511 | INFO     | --- collectZombieJob: --- 10, [1912447]
[2025-11-27 11:14:30] 2025-11-27 16:13:52,511 | INFO     | zombie collector waiting for pid 1912447
[2025-11-27 11:14:30] 2025-11-27 16:13:52,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:14:30] 2025-11-27 16:13:52,511 | INFO     | collected zombie processes
[2025-11-27 11:14:30] 2025-11-27 16:13:52,511 | INFO     | will attempt to kill all subprocesses of pid=1912447
[2025-11-27 11:14:30] 2025-11-27 16:13:56,657 | INFO     | process IDs to be killed: [1912447] (in reverse order)
[2025-11-27 11:14:30] 2025-11-27 16:13:58,244 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:14:30] 2025-11-27 16:13:58,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:14:30] 2025-11-27 16:13:58,359 | INFO     | did not find any defunct processes belonging to 1912447
[2025-11-27 11:14:30] 2025-11-27 16:13:58,448 | INFO     | did not find any defunct processes belonging to 1912447
[2025-11-27 11:14:30] 2025-11-27 16:13:58,488 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:14:30] 2025-11-27 16:13:58,488 | INFO     | ready for new job
[2025-11-27 11:14:30] 2025-11-27 16:13:58,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:14:30] 2025-11-27 16:13:58,491 | INFO     | ***************************************
[2025-11-27 11:14:30] 2025-11-27 16:13:58,491 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:14:30] 2025-11-27 16:13:58,491 | INFO     | ***************************************
[2025-11-27 11:14:30] 2025-11-27 16:13:58,491 | INFO     | 
[2025-11-27 11:14:30] 2025-11-27 16:13:58,499 | INFO     | architecture information:
[2025-11-27 11:14:30] 2025-11-27 16:13:58,558 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:14:30] 2025-11-27 16:13:58,779 | INFO     | cat /etc/os-release:
[2025-11-27 11:14:30] NAME="CentOS Linux"
[2025-11-27 11:14:30] VERSION="7 (Core)"
[2025-11-27 11:14:30] ID="centos"
[2025-11-27 11:14:30] ID_LIKE="rhel fedora"
[2025-11-27 11:14:30] VERSION_ID="7"
[2025-11-27 11:14:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:14:30] ANSI_COLOR="0;31"
[2025-11-27 11:14:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:14:30] HOME_URL="https://www.centos.org/"
[2025-11-27 11:14:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:14:30] 
[2025-11-27 11:14:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:14:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:14:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:14:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:14:30] 
[2025-11-27 11:14:30] 2025-11-27 16:13:58,779 | INFO     | ***************************************
[2025-11-27 11:14:30] 2025-11-27 16:13:59,283 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-27 11:14:30] 2025-11-27 16:13:59,434 | INFO     | sufficient remaining disk space (153720193024 B)
[2025-11-27 11:14:30] 2025-11-27 16:13:59,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:14:30] 2025-11-27 16:13:59,435 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:14:30] 2025-11-27 16:13:59,435 | INFO     | update_server=False
[2025-11-27 11:14:30] 2025-11-27 16:13:59,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:14:30] 2025-11-27 16:13:59,521 | INFO     | all job control threads have been joined
[2025-11-27 11:14:30] 2025-11-27 16:13:59,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:14:30] 2025-11-27 16:14:00,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:14:30] 2025-11-27 16:14:00,151 | INFO     | aborting loop
[2025-11-27 11:14:30] 2025-11-27 16:14:00,274 | INFO     | all data control threads have been joined
[2025-11-27 11:14:30] 2025-11-27 16:14:00,381 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:14:30] 2025-11-27 16:14:00,441 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:00,445 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:00,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:14:30] 2025-11-27 16:14:00,527 | INFO     | [job] control thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:00,629 | INFO     | [job] validate thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:00,721 | INFO     | all payload control threads have been joined
[2025-11-27 11:14:30] 2025-11-27 16:14:00,745 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,045 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,145 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,159 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,177 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,314 | INFO     | [data] control thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,387 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,750 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,750 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:01,770 | INFO     | [payload] control thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:02,017 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:04,514 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:14:30] 2025-11-27 16:14:12,974 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:14:30] 2025-11-27 16:14:13,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850547656512)>', '<ExcThread(monitor, started 139849973626624)>']
[2025-11-27 11:14:30] 2025-11-27 16:14:18,139 | INFO     | all workflow threads have been joined
[2025-11-27 11:14:30] 2025-11-27 16:14:18,139 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:14:30] 2025-11-27 16:14:18,139 | INFO     | traces error code: 0
[2025-11-27 11:14:30] 2025-11-27 16:14:18,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:14:30] 2025-11-27 16:14:26,769 | INFO     | PID=1810862 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:14:30] 2025-11-27 16:14:26,769 | INFO     | .. there are 132 such processes running
[2025-11-27 11:14:30] 2025-11-27 16:14:26,770 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:14:30] 2025-11-27 16:14:26,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:14:30] 2025-11-27 16:14:26,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:14:30] 2025-11-27 16:14:26,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:14:30] 2025-11-27 16:14:26,770 | INFO     | [monitor] control thread has ended
[2025-11-27 11:14:30] 2025-11-27 16:14:27,927 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:14:30] 2025-11-27 16:14:27,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:14:30] 2025-11-27 16:14:27,978 [wrapper] pilotpid: 1810862
[2025-11-27 11:14:30] 2025-11-27 16:14:28,070 [wrapper] Pilot exit status: 0
[2025-11-27 11:14:30] 2025-11-27 16:14:28,289 [wrapper] pandaids: 6898175879
[2025-11-27 11:14:30] 2025-11-27 16:14:29,113 [wrapper] cleanup supervisor_pilot 1673694 1810863
[2025-11-27 11:14:30] 2025-11-27 16:14:29,157 [wrapper] Test setup, not cleaning
[2025-11-27 11:14:30] 2025-11-27 16:14:29,199 [wrapper] apfmon messages muted
[2025-11-27 11:14:30] 2025-11-27 16:14:29,225 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:14:30] 2025-11-27 16:14:29,304 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:14:30]  *** Error codes and diagnostics ***
[2025-11-27 11:14:30]     "exeErrorCode": 0,
[2025-11-27 11:14:30]     "exeErrorDiag": "",
[2025-11-27 11:14:30]     "pilotErrorCode": 0,
[2025-11-27 11:14:30]     "pilotErrorDiag": "",
[2025-11-27 11:14:30]  *** Listing of results directory ***
[2025-11-27 11:14:30] total 1316276
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 11:14:30] -rwx------. 1 boincer umatlas     36292 Nov 25 22:58 runpilot2-wrapper.sh
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:14:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 11:14:30] -rw-r--r--. 2 boincer umatlas 409529520 Nov 27 00:01 EVNT.47483658._002459.pool.root.1
[2025-11-27 11:14:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 11:14:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 11:14:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:01 input.tar.gz
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 11:14:30] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:06 boinc_task_state.xml
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas 921567072 Nov 27 11:10 HITS.47556161._004420.pool.root.1
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 11:11 init_data.xml
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas      1054 Nov 27 11:12 memory_monitor_summary.json
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas   1837578 Nov 27 11:12 log.47556161._004420.job.log.tgz.1
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas      7913 Nov 27 11:13 heartbeat.json
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:14 wrapper_checkpoint.txt
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas       824 Nov 27 11:14 pilotlog.txt
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas        95 Nov 27 11:14 pilot_heartbeat.json
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas   4594175 Nov 27 11:14 log.47556161._004420.job.log.1
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:14 boinc_mmap_file
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas       353 Nov 27 11:14 output.list
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:14 runtime_log
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas   6451200 Nov 27 11:14 result.tar.gz
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas      9351 Nov 27 11:14 runtime_log.err
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas       658 Nov 27 11:14 cL1LDmlqLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1sJKDmziYTwm.diag
[2025-11-27 11:14:30] -rw-r--r--. 1 boincer umatlas     21888 Nov 27 11:14 stderr.txt
[2025-11-27 11:14:30] HITS file was successfully produced:
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas 921567072 Nov 27 11:10 shared/HITS.pool.root.1
[2025-11-27 11:14:30]  *** Contents of shared directory: ***
[2025-11-27 11:14:30] total 1306800
[2025-11-27 11:14:30] -rw-r--r--. 2 boincer umatlas 409529520 Nov 27 00:01 ATLAS.root_0
[2025-11-27 11:14:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 11:14:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 27 00:01 input.tar.gz
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas 921567072 Nov 27 11:10 HITS.pool.root.1
[2025-11-27 11:14:30] -rw-------. 1 boincer umatlas   6451200 Nov 27 11:14 result.tar.gz
11:14:53 (1781815): run_atlas exited; CPU time 136391.733704
11:14:53 (1781815): called boinc_finish(0)

</stderr_txt>
]]>

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