Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:52 (1776383): wrapper (7.7.26015): starting
00:00:52 (1776383): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:00:52] Arguments: --nthreads 8
[2025-11-27 00:00:52] Threads: 8
[2025-11-27 00:00:52] Checking for CVMFS
[2025-11-27 00:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:56] 2.13.3.0 9438 31020 282788 153347 3 732 39941311 40960001 99070 16776704 0 440164865 99.756 267360244 47636 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:00:56] CVMFS is ok
[2025-11-27 00:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:56] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:56] Checking for apptainer binary...
[2025-11-27 00:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:56] Running /usr/bin/apptainer --version
[2025-11-27 00:00:57] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:57] c8-7-3.aglt2.org
[2025-11-27 00:00:57] apptainer works
[2025-11-27 00:00:57] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:00:57] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:00:57] Starting ATLAS job with PandaID=6898120879
[2025-11-27 00:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:16:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:16:09] 2025-11-27 16:15:14,902 | INFO     | PID=1801017 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:16:09] 2025-11-27 16:15:14,902 | INFO     | .. there are 131 such processes running
[2025-11-27 11:16:09] 2025-11-27 16:15:15,903 | INFO     | time since job start (40351s) is within the limit (172800.0s)
[2025-11-27 11:16:09] 2025-11-27 16:15:16,528 | INFO     | monitor loop #2122: job 0:6898120879 is in state 'finished'
[2025-11-27 11:16:09] 2025-11-27 16:15:16,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:16:09] 2025-11-27 16:15:17,910 | INFO     | time since job start (40353s) is within the limit (172800.0s)
[2025-11-27 11:16:09] 2025-11-27 16:15:19,066 | INFO     | monitor loop #2123: job 0:6898120879 is in state 'finished'
[2025-11-27 11:16:09] 2025-11-27 16:15:19,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:16:09] 2025-11-27 16:15:19,923 | INFO     | time since job start (40355s) is within the limit (172800.0s)
[2025-11-27 11:16:09] 2025-11-27 16:15:21,577 | INFO     | monitor loop #2124: job 0:6898120879 is in state 'finished'
[2025-11-27 11:16:09] 2025-11-27 16:15:21,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:16:09] 2025-11-27 16:15:21,929 | INFO     | time since job start (40357s) is within the limit (172800.0s)
[2025-11-27 11:16:09] 2025-11-27 16:15:23,957 | INFO     | time since job start (40359s) is within the limit (172800.0s)
[2025-11-27 11:16:09] 2025-11-27 16:15:24,087 | INFO     | monitor loop #2125: job 0:6898120879 is in state 'finished'
[2025-11-27 11:16:09] 2025-11-27 16:15:24,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,539 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:16:09] 2025-11-27 16:15:25,543 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1264687500006
[2025-11-27 11:16:09] 2025-11-27 16:15:25,567 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6898120879/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,567 | INFO     | extracted standard info from prmon json
[2025-11-27 11:16:09] 2025-11-27 16:15:25,567 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:16:09] 2025-11-27 16:15:25,567 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:16:09] 2025-11-27 16:15:25,586 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:16:09] 2025-11-27 16:15:25,587 | INFO     | sum of square deviations: 87537296664.3277
[2025-11-27 11:16:09] 2025-11-27 16:15:25,593 | INFO     | sum of deviations: -1070633722701.1304
[2025-11-27 11:16:09] 2025-11-27 16:15:25,593 | INFO     | mean x: 1764240050.5929878
[2025-11-27 11:16:09] 2025-11-27 16:15:25,593 | INFO     | mean y: 2681975.362804878
[2025-11-27 11:16:09] 2025-11-27 16:15:25,593 | INFO     | intersect: 21580397590.089207
[2025-11-27 11:16:09] 2025-11-27 16:15:25,593 | INFO     | chi2: 53.603976209546836
[2025-11-27 11:16:09] 2025-11-27 16:15:25,594 | INFO     | sum of square deviations: 85551133913.30879
[2025-11-27 11:16:09] 2025-11-27 16:15:25,599 | INFO     | sum of deviations: -855890159754.4103
[2025-11-27 11:16:09] 2025-11-27 16:15:25,599 | INFO     | mean x: 1764239898.1013825
[2025-11-27 11:16:09] 2025-11-27 16:15:25,599 | INFO     | mean y: 2698454.5668202764
[2025-11-27 11:16:09] 2025-11-27 16:15:25,599 | INFO     | intersect: 17652909493.981155
[2025-11-27 11:16:09] 2025-11-27 16:15:25,600 | INFO     | chi2: 49.09601026159044
[2025-11-27 11:16:09] 2025-11-27 16:15:25,600 | INFO     | current chi2=49.09601026159044 (change=8.409760369891229 %)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,600 | INFO     | right removable region: 650
[2025-11-27 11:16:09] 2025-11-27 16:15:25,600 | INFO     | sum of square deviations: 85550696543.30876
[2025-11-27 11:16:09] 2025-11-27 16:15:25,605 | INFO     | sum of deviations: -1320189762623.1938
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | mean x: 1764240203.1013825
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | mean y: 2701127.5483870967
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | intersect: 27227866427.793736
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | chi2: 49.63037112109139
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | current chi2=49.63037112109139 (change=7.412892418506346 %)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | left removable region: 10
[2025-11-27 11:16:09] 2025-11-27 16:15:25,606 | INFO     | sum of square deviations: 81286957996.73581
[2025-11-27 11:16:09] 2025-11-27 16:15:25,611 | INFO     | sum of deviations: -1276207337002.1343
[2025-11-27 11:16:09] 2025-11-27 16:15:25,611 | INFO     | mean x: 1764240172.6203125
[2025-11-27 11:16:09] 2025-11-27 16:15:25,611 | INFO     | mean y: 2738120.871875
[2025-11-27 11:16:09] 2025-11-27 16:15:25,611 | INFO     | intersect: 27701354332.12643
[2025-11-27 11:16:09] 2025-11-27 16:15:25,612 | INFO     | chi2: 41.41588074087993
[2025-11-27 11:16:09] 2025-11-27 16:15:25,612 | INFO     | current memory leak: -15.70 B/s (using 640 data points, chi2=41.42)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | could have reported an average CPU frequency of 3800 MHz (25 samples)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | ..............................
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . Timing measurements:
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . get job = 0 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . initial setup = 9 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . payload setup = 89 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . stage-in = 0 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . payload execution = 40029 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . stage-out = 8 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | . log creation = 2 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,613 | INFO     | ..............................
[2025-11-27 11:16:09] 2025-11-27 16:15:25,965 | INFO     | time since job start (40361s) is within the limit (172800.0s)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | 
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | job summary report
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | --------------------------------------------------
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | PanDA job id: 6898120879
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | task id: 47556161
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | errors: (none)
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | pilot state: finished 
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | transexitcode: 0
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | exeerrorcode: 0
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | exeerrordiag: 
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | exitcode: 0
[2025-11-27 11:16:09] 2025-11-27 16:15:25,966 | INFO     | exitmsg: OK
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | cpuconsumptiontime: 136673 s
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | nevents: 1000
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | neventsw: 0
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | pid: 1904073
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | pgrp: 1904073
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | corecount: 8
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | event service: False
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284321, 13: 2284321, 23: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 68: 2284907, 77: 2284935, 40120: 2328369,
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | --------------------------------------------------
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | 
[2025-11-27 11:16:09] 2025-11-27 16:15:25,967 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-11-27 11:16:09] 2025-11-27 16:15:26,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,223 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,223 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | job 6898120879 has completed (purged errors)
[2025-11-27 11:16:09] 2025-11-27 16:15:26,226 | INFO     | overall cleanup function is called
[2025-11-27 11:16:09] 2025-11-27 16:15:27,250 | INFO     | --- collectZombieJob: --- 10, [1904073]
[2025-11-27 11:16:09] 2025-11-27 16:15:27,250 | INFO     | zombie collector waiting for pid 1904073
[2025-11-27 11:16:09] 2025-11-27 16:15:27,250 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:16:09] 2025-11-27 16:15:27,250 | INFO     | collected zombie processes
[2025-11-27 11:16:09] 2025-11-27 16:15:27,250 | INFO     | will attempt to kill all subprocesses of pid=1904073
[2025-11-27 11:16:09] 2025-11-27 16:15:30,037 | INFO     | process IDs to be killed: [1904073] (in reverse order)
[2025-11-27 11:16:09] 2025-11-27 16:15:30,549 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:16:09] 2025-11-27 16:15:30,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:16:09] 2025-11-27 16:15:30,624 | INFO     | did not find any defunct processes belonging to 1904073
[2025-11-27 11:16:09] 2025-11-27 16:15:30,777 | INFO     | did not find any defunct processes belonging to 1904073
[2025-11-27 11:16:09] 2025-11-27 16:15:30,884 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:16:09] 2025-11-27 16:15:30,885 | INFO     | ready for new job
[2025-11-27 11:16:09] 2025-11-27 16:15:30,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:16:09] 2025-11-27 16:15:30,887 | INFO     | ***************************************
[2025-11-27 11:16:09] 2025-11-27 16:15:30,887 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:16:09] 2025-11-27 16:15:30,887 | INFO     | ***************************************
[2025-11-27 11:16:09] 2025-11-27 16:15:30,887 | INFO     | 
[2025-11-27 11:16:09] 2025-11-27 16:15:30,892 | INFO     | architecture information:
[2025-11-27 11:16:09] 2025-11-27 16:15:30,892 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:16:09] 2025-11-27 16:15:32,470 | INFO     | cat /etc/os-release:
[2025-11-27 11:16:09] NAME="CentOS Linux"
[2025-11-27 11:16:09] VERSION="7 (Core)"
[2025-11-27 11:16:09] ID="centos"
[2025-11-27 11:16:09] ID_LIKE="rhel fedora"
[2025-11-27 11:16:09] VERSION_ID="7"
[2025-11-27 11:16:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:16:09] ANSI_COLOR="0;31"
[2025-11-27 11:16:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:16:09] HOME_URL="https://www.centos.org/"
[2025-11-27 11:16:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:16:09] 
[2025-11-27 11:16:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:16:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:16:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:16:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:16:09] 
[2025-11-27 11:16:09] 2025-11-27 16:15:32,471 | INFO     | ***************************************
[2025-11-27 11:16:09] 2025-11-27 16:15:33,014 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-11-27 11:16:09] 2025-11-27 16:15:35,257 | INFO     | sufficient remaining disk space (154637697024 B)
[2025-11-27 11:16:09] 2025-11-27 16:15:35,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:16:09] 2025-11-27 16:15:35,257 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:16:09] 2025-11-27 16:15:35,257 | INFO     | update_server=False
[2025-11-27 11:16:09] 2025-11-27 16:15:35,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:16:09] 2025-11-27 16:15:35,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:16:09] 2025-11-27 16:15:35,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:16:09] 2025-11-27 16:15:35,263 | INFO     | aborting loop
[2025-11-27 11:16:09] 2025-11-27 16:15:35,263 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:16:09] 2025-11-27 16:15:35,319 | INFO     | all data control threads have been joined
[2025-11-27 11:16:09] 2025-11-27 16:15:35,485 | INFO     | all job control threads have been joined
[2025-11-27 11:16:09] 2025-11-27 16:15:35,781 | INFO     | all payload control threads have been joined
[2025-11-27 11:16:09] 2025-11-27 16:15:36,263 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,263 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,269 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,327 | INFO     | [data] control thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,406 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,406 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,491 | INFO     | [job] control thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,691 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,715 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,724 | INFO     | [job] validate thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:36,798 | INFO     | [payload] control thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:37,062 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:37,111 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:37,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:16:09] 2025-11-27 16:15:37,274 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:37,728 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:41,206 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:16:09] 2025-11-27 16:15:56,373 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:16:09] 2025-11-27 16:15:57,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286496151360)>', '<ExcThread(monitor, started 140285627586304)>']
[2025-11-27 11:16:09] 2025-11-27 16:16:02,261 | INFO     | all workflow threads have been joined
[2025-11-27 11:16:09] 2025-11-27 16:16:02,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:16:09] 2025-11-27 16:16:02,265 | INFO     | traces error code: 0
[2025-11-27 11:16:09] 2025-11-27 16:16:02,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:16:09] 2025-11-27 16:16:04,453 | INFO     | PID=1801017 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:16:09] 2025-11-27 16:16:04,455 | INFO     | .. there are 131 such processes running
[2025-11-27 11:16:09] 2025-11-27 16:16:04,459 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:16:09] 2025-11-27 16:16:04,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:16:09] 2025-11-27 16:16:04,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:16:09] 2025-11-27 16:16:04,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:16:09] 2025-11-27 16:16:04,459 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 11:16:09] 2025-11-27 16:16:04,459 | INFO     | [monitor] control thread has ended
[2025-11-27 11:16:09] 2025-11-27 16:16:05,008 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:16:09] 2025-11-27 16:16:05,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:16:09] 2025-11-27 16:16:05,127 [wrapper] pilotpid: 1801017
[2025-11-27 11:16:09] 2025-11-27 16:16:05,178 [wrapper] Pilot exit status: 0
[2025-11-27 11:16:09] 2025-11-27 16:16:05,420 [wrapper] pandaids: 6898120879
[2025-11-27 11:16:09] 2025-11-27 16:16:06,600 [wrapper] cleanup supervisor_pilot 1671020 1801018
[2025-11-27 11:16:09] 2025-11-27 16:16:06,640 [wrapper] Test setup, not cleaning
[2025-11-27 11:16:09] 2025-11-27 16:16:06,692 [wrapper] apfmon messages muted
[2025-11-27 11:16:09] 2025-11-27 16:16:06,733 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:16:09] 2025-11-27 16:16:06,777 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:16:09]  *** Error codes and diagnostics ***
[2025-11-27 11:16:09]     "exeErrorCode": 0,
[2025-11-27 11:16:09]     "exeErrorDiag": "",
[2025-11-27 11:16:09]     "pilotErrorCode": 0,
[2025-11-27 11:16:09]     "pilotErrorDiag": "",
[2025-11-27 11:16:09]  *** Listing of results directory ***
[2025-11-27 11:16:09] total 1314944
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 11:16:09] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:16:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-27 11:16:09] -rw-r--r--. 2 boincer umatlas 408912877 Nov 27 00:00 EVNT.47483658._002450.pool.root.1
[2025-11-27 11:16:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 11:16:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-27 11:16:09] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:00 input.tar.gz
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:00 pandaJob.out
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 11:16:09] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:19 boinc_task_state.xml
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 11:11 init_data.xml
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas 920557463 Nov 27 11:11 HITS.47556161._004324.pool.root.1
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas      1054 Nov 27 11:13 memory_monitor_summary.json
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas   1840895 Nov 27 11:14 log.47556161._004324.job.log.tgz.1
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas      8584 Nov 27 11:15 heartbeat.json
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas        95 Nov 27 11:16 pilot_heartbeat.json
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas       894 Nov 27 11:16 pilotlog.txt
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas   4714827 Nov 27 11:16 log.47556161._004324.job.log.1
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:16 boinc_mmap_file
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas       353 Nov 27 11:16 output.list
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:16 wrapper_checkpoint.txt
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:16 runtime_log
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas   6574080 Nov 27 11:16 result.tar.gz
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas       658 Nov 27 11:16 YlFKDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQsMKDmlzsTPo.diag
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas      9351 Nov 27 11:16 runtime_log.err
[2025-11-27 11:16:09] -rw-r--r--. 1 boincer umatlas     21853 Nov 27 11:16 stderr.txt
[2025-11-27 11:16:09] HITS file was successfully produced:
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas 920557463 Nov 27 11:11 shared/HITS.pool.root.1
[2025-11-27 11:16:09]  *** Contents of shared directory: ***
[2025-11-27 11:16:09] total 1305340
[2025-11-27 11:16:09] -rw-r--r--. 2 boincer umatlas 408912877 Nov 27 00:00 ATLAS.root_0
[2025-11-27 11:16:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-27 11:16:09] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:00 input.tar.gz
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas 920557463 Nov 27 11:11 HITS.pool.root.1
[2025-11-27 11:16:09] -rw-------. 1 boincer umatlas   6574080 Nov 27 11:16 result.tar.gz
11:16:11 (1776383): run_atlas exited; CPU time 137988.154793
11:16:11 (1776383): called boinc_finish(0)

</stderr_txt>
]]>

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