Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:22 (3667409): wrapper (7.7.26015): starting
00:03:22 (3667409): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:03:22] Arguments: --nthreads 9
[2025-11-27 00:03:22] Threads: 9
[2025-11-27 00:03:22] Checking for CVMFS
[2025-11-27 00:03:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:24] 2.13.3.0 15551 29343 315604 153347 1 199 18589738 32935937 28379 16776704 0 57841779 99.570 67163613 39586 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:03:24] CVMFS is ok
[2025-11-27 00:03:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:24] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:24] Checking for apptainer binary...
[2025-11-27 00:03:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:24] Running /usr/bin/apptainer --version
[2025-11-27 00:03:24] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:24] c6-5-7-3.aglt2.org
[2025-11-27 00:03:24] apptainer works
[2025-11-27 00:03:24] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:03:24] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:03:25] Starting ATLAS job with PandaID=6898120645
[2025-11-27 00:03:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:45:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:45:21] 2025-11-27 15:52:27,665 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:45:21] 2025-11-27 15:52:27,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:45:21] 2025-11-27 15:52:27,673 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:45:21] 2025-11-27 15:52:27,674 | INFO     | sum of square deviations: 79393563491.08043
[2025-11-27 11:45:21] 2025-11-27 15:52:27,680 | INFO     | sum of deviations: 983102870244.8167
[2025-11-27 11:45:21] 2025-11-27 15:52:27,681 | INFO     | mean x: 1764239356.2629921
[2025-11-27 11:45:21] 2025-11-27 15:52:27,681 | INFO     | mean y: 3002849.749606299
[2025-11-27 11:45:21] 2025-11-27 15:52:27,681 | INFO     | intersect: -21842959198.998486
[2025-11-27 11:45:21] 2025-11-27 15:52:27,681 | INFO     | chi2: 11.181833678443896
[2025-11-27 11:45:21] 2025-11-27 15:52:27,682 | INFO     | sum of square deviations: 77533038320.5419
[2025-11-27 11:45:21] 2025-11-27 15:52:27,689 | INFO     | sum of deviations: 1227510438043.272
[2025-11-27 11:45:21] 2025-11-27 15:52:27,690 | INFO     | mean x: 1764239203.773016
[2025-11-27 11:45:21] 2025-11-27 15:52:27,690 | INFO     | mean y: 3022884.4984126985
[2025-11-27 11:45:21] 2025-11-27 15:52:27,690 | INFO     | intersect: -27928580013.39499
[2025-11-27 11:45:21] 2025-11-27 15:52:27,690 | INFO     | chi2: 7.444268165459972
[2025-11-27 11:45:21] 2025-11-27 15:52:27,690 | INFO     | current chi2=7.444268165459972 (change=33.42533631303356 %)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,691 | INFO     | sum of square deviations: 75701816024.87366
[2025-11-27 11:45:21] 2025-11-27 15:52:27,698 | INFO     | sum of deviations: 1337795209994.9668
[2025-11-27 11:45:21] 2025-11-27 15:52:27,698 | INFO     | mean x: 1764239051.2832
[2025-11-27 11:45:21] 2025-11-27 15:52:27,698 | INFO     | mean y: 3032063.616
[2025-11-27 11:45:21] 2025-11-27 15:52:27,699 | INFO     | intersect: -31174430724.294292
[2025-11-27 11:45:21] 2025-11-27 15:52:27,699 | INFO     | chi2: 6.508826541292537
[2025-11-27 11:45:21] 2025-11-27 15:52:27,699 | INFO     | current chi2=6.508826541292537 (change=12.565931309510198 %)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,700 | INFO     | right removable region: 624
[2025-11-27 11:45:21] 2025-11-27 15:52:27,700 | INFO     | sum of square deviations: 77532549100.54187
[2025-11-27 11:45:21] 2025-11-27 15:52:27,708 | INFO     | sum of deviations: 722476332853.302
[2025-11-27 11:45:21] 2025-11-27 15:52:27,708 | INFO     | mean x: 1764239508.773016
[2025-11-27 11:45:21] 2025-11-27 15:52:27,708 | INFO     | mean y: 3024202.5825396827
[2025-11-27 11:45:21] 2025-11-27 15:52:27,708 | INFO     | intersect: -16436797593.039698
[2025-11-27 11:45:21] 2025-11-27 15:52:27,709 | INFO     | chi2: 7.131807339444839
[2025-11-27 11:45:21] 2025-11-27 15:52:27,709 | INFO     | current chi2=7.131807339444839 (change=36.219697551096765 %)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,709 | INFO     | sum of square deviations: 75700876016.43863
[2025-11-27 11:45:21] 2025-11-27 15:52:27,716 | INFO     | sum of deviations: 535796512486.7169
[2025-11-27 11:45:21] 2025-11-27 15:52:27,716 | INFO     | mean x: 1764239661.2816
[2025-11-27 11:45:21] 2025-11-27 15:52:27,717 | INFO     | mean y: 3039735.7232
[2025-11-27 11:45:21] 2025-11-27 15:52:27,717 | INFO     | intersect: -12483915600.172247
[2025-11-27 11:45:21] 2025-11-27 15:52:27,717 | INFO     | chi2: 5.187293684103174
[2025-11-27 11:45:21] 2025-11-27 15:52:27,718 | INFO     | current chi2=5.187293684103174 (change=27.265369951693508 %)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,718 | INFO     | sum of square deviations: 73898730127.4773
[2025-11-27 11:45:21] 2025-11-27 15:52:27,725 | INFO     | sum of deviations: 471681062822.987
[2025-11-27 11:45:21] 2025-11-27 15:52:27,725 | INFO     | mean x: 1764239813.7709677
[2025-11-27 11:45:21] 2025-11-27 15:52:27,725 | INFO     | mean y: 3045159.6548387096
[2025-11-27 11:45:21] 2025-11-27 15:52:27,725 | INFO     | intersect: -11257750648.319439
[2025-11-27 11:45:21] 2025-11-27 15:52:27,726 | INFO     | chi2: 5.03653089641822
[2025-11-27 11:45:21] 2025-11-27 15:52:27,726 | INFO     | current chi2=5.03653089641822 (change=2.9063861980087453 %)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,726 | INFO     | left removable region: 30
[2025-11-27 11:45:21] 2025-11-27 15:52:27,727 | INFO     | sum of square deviations: 64986508922.695015
[2025-11-27 11:45:21] 2025-11-27 15:52:27,733 | INFO     | sum of deviations: 711222970545.572
[2025-11-27 11:45:21] 2025-11-27 15:52:27,733 | INFO     | mean x: 1764239935.7895622
[2025-11-27 11:45:21] 2025-11-27 15:52:27,733 | INFO     | mean y: 3087431.1245791246
[2025-11-27 11:45:21] 2025-11-27 15:52:27,733 | INFO     | intersect: -19305042651.38218
[2025-11-27 11:45:21] 2025-11-27 15:52:27,734 | INFO     | chi2: 0.11460683654107712
[2025-11-27 11:45:21] 2025-11-27 15:52:27,734 | INFO     | current memory leak: 10.94 B/s (using 594 data points, chi2=0.11)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,735 | INFO     | could have reported an average CPU frequency of 3035 MHz (25 samples)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,735 | INFO     | ..............................
[2025-11-27 11:45:21] 2025-11-27 15:52:27,735 | INFO     | . Timing measurements:
[2025-11-27 11:45:21] 2025-11-27 15:52:27,735 | INFO     | . get job = 0 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,735 | INFO     | . initial setup = 4 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,736 | INFO     | . payload setup = 44 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,736 | INFO     | . stage-in = 0 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,736 | INFO     | . payload execution = 38749 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,736 | INFO     | . stage-out = 3 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,736 | INFO     | . log creation = 0 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,736 | INFO     | ..............................
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | 
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | job summary report
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | --------------------------------------------------
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | PanDA job id: 6898120645
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | task id: 47556173
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | errors: (none)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | pilot state: finished 
[2025-11-27 11:45:21] 2025-11-27 15:52:27,819 | INFO     | transexitcode: 0
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | exeerrorcode: 0
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | exeerrordiag: 
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | exitcode: 0
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | exitmsg: OK
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | cpuconsumptiontime: 245009 s
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | nevents: 1000
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | neventsw: 0
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | pid: 3711804
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | pgrp: 3711804
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | corecount: 9
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | event service: False
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 13: 2284320, 23: 2284376, 34: 2284822, 38797: 2326695, 38801: 2335689, 38803: 2335745, 38814: 2336055}
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | --------------------------------------------------
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | 
[2025-11-27 11:45:21] 2025-11-27 15:52:27,820 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 11:45:21] 2025-11-27 15:52:27,847 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,849 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:45:21] 2025-11-27 15:52:27,849 | INFO     | job 6898120645 has completed (purged errors)
[2025-11-27 11:45:21] 2025-11-27 15:52:27,849 | INFO     | overall cleanup function is called
[2025-11-27 11:45:21] 2025-11-27 15:52:28,866 | INFO     | --- collectZombieJob: --- 10, [3711804]
[2025-11-27 11:45:21] 2025-11-27 15:52:28,866 | INFO     | zombie collector waiting for pid 3711804
[2025-11-27 11:45:21] 2025-11-27 15:52:28,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:45:21] 2025-11-27 15:52:28,867 | INFO     | collected zombie processes
[2025-11-27 11:45:21] 2025-11-27 15:52:28,867 | INFO     | will attempt to kill all subprocesses of pid=3711804
[2025-11-27 11:45:21] 2025-11-27 15:52:29,235 | INFO     | process IDs to be killed: [3711804] (in reverse order)
[2025-11-27 11:45:21] 2025-11-27 15:52:29,373 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:45:21] 2025-11-27 15:52:29,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:45:21] 2025-11-27 15:52:29,389 | INFO     | did not find any defunct processes belonging to 3711804
[2025-11-27 11:45:21] 2025-11-27 15:52:29,405 | INFO     | did not find any defunct processes belonging to 3711804
[2025-11-27 11:45:21] 2025-11-27 15:52:29,407 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:45:21] 2025-11-27 15:52:29,407 | INFO     | ready for new job
[2025-11-27 11:45:21] 2025-11-27 15:52:29,407 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:45:21] 2025-11-27 15:52:29,410 | INFO     | ***************************************
[2025-11-27 11:45:21] 2025-11-27 15:52:29,411 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:45:21] 2025-11-27 15:52:29,411 | INFO     | ***************************************
[2025-11-27 11:45:21] 2025-11-27 15:52:29,411 | INFO     | 
[2025-11-27 11:45:21] 2025-11-27 15:52:29,414 | INFO     | architecture information:
[2025-11-27 11:45:21] 2025-11-27 15:52:29,414 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:45:21] 2025-11-27 15:52:29,436 | INFO     | cat /etc/os-release:
[2025-11-27 11:45:21] NAME="CentOS Linux"
[2025-11-27 11:45:21] VERSION="7 (Core)"
[2025-11-27 11:45:21] ID="centos"
[2025-11-27 11:45:21] ID_LIKE="rhel fedora"
[2025-11-27 11:45:21] VERSION_ID="7"
[2025-11-27 11:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:45:21] ANSI_COLOR="0;31"
[2025-11-27 11:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:45:21] HOME_URL="https://www.centos.org/"
[2025-11-27 11:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:45:21] 
[2025-11-27 11:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:45:21] 
[2025-11-27 11:45:21] 2025-11-27 15:52:29,437 | INFO     | ***************************************
[2025-11-27 11:45:21] 2025-11-27 15:52:29,949 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 11:45:21] 2025-11-27 15:52:30,039 | INFO     | sufficient remaining disk space (70750568448 B)
[2025-11-27 11:45:21] 2025-11-27 15:52:30,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:45:21] 2025-11-27 15:52:30,040 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:45:21] 2025-11-27 15:52:30,040 | INFO     | update_server=False
[2025-11-27 11:45:21] 2025-11-27 15:52:30,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:45:21] 2025-11-27 15:52:30,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:45:21] 2025-11-27 15:52:30,049 | INFO     | aborting loop
[2025-11-27 11:45:21] 2025-11-27 15:52:30,220 | INFO     | all data control threads have been joined
[2025-11-27 11:45:21] 2025-11-27 15:52:30,501 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:45:21] 2025-11-27 15:52:31,046 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,055 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,136 | INFO     | all payload control threads have been joined
[2025-11-27 11:45:21] 2025-11-27 15:52:31,207 | INFO     | all job control threads have been joined
[2025-11-27 11:45:21] 2025-11-27 15:52:31,226 | INFO     | [data] control thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,346 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,399 | INFO     | [job] validate thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,434 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:31,733 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,144 | INFO     | [payload] control thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,213 | INFO     | [job] control thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,331 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,426 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,429 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:45:21] 2025-11-27 15:52:32,517 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:32,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:45:21] 2025-11-27 15:52:33,863 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:36,520 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:45:21] 2025-11-27 15:52:37,818 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:45:21] 2025-11-27 15:52:38,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148798461760)>', '<ExcThread(monitor, started 140148306065152)>']
[2025-11-27 11:45:21] 2025-11-27 15:52:43,698 | INFO     | all workflow threads have been joined
[2025-11-27 11:45:21] 2025-11-27 15:52:43,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:45:21] 2025-11-27 15:52:43,699 | INFO     | traces error code: 0
[2025-11-27 11:45:21] 2025-11-27 15:52:43,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:45:21] 2025-11-27 15:53:01,045 | INFO     | PID=3679311 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:45:21] 2025-11-27 15:53:01,075 | INFO     | .. there are 39 such processes running
[2025-11-27 11:45:21] 2025-11-27 15:53:01,076 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:45:21] 2025-11-27 15:53:01,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:45:21] 2025-11-27 15:53:01,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:45:21] 2025-11-27 15:53:01,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:45:21] 2025-11-27 15:53:01,076 | INFO     | [monitor] control thread has ended
[2025-11-27 11:45:21] 2025-11-27 15:53:01,271 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:45:21] 2025-11-27 15:53:01,274 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:45:21] 2025-11-27 15:53:01,277 [wrapper] pilotpid: 3679311
[2025-11-27 11:45:21] 2025-11-27 15:53:01,281 [wrapper] Pilot exit status: 0
[2025-11-27 11:45:21] 2025-11-27 15:53:01,301 [wrapper] pandaids: 6898120645
[2025-11-27 11:45:21] 2025-11-27 15:53:01,415 [wrapper] cleanup supervisor_pilot 1912761 3679312
[2025-11-27 11:45:21] 2025-11-27 15:53:01,431 [wrapper] Test setup, not cleaning
[2025-11-27 11:45:21] 2025-11-27 15:53:01,450 [wrapper] apfmon messages muted
[2025-11-27 11:45:21] 2025-11-27 15:53:01,470 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:45:21] 2025-11-27 15:53:01,473 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:45:21]  *** Error codes and diagnostics ***
[2025-11-27 11:45:21]     "exeErrorCode": 0,
[2025-11-27 11:45:21]     "exeErrorDiag": "",
[2025-11-27 11:45:21]     "pilotErrorCode": 0,
[2025-11-27 11:45:21]     "pilotErrorDiag": "",
[2025-11-27 11:45:21]  *** Listing of results directory ***
[2025-11-27 11:45:21] total 1318196
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:40 queuedata.json
[2025-11-27 11:45:21] -rwx------. 1 boincer umatlas     36292 Nov 25 22:40 runpilot2-wrapper.sh
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:45:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 11:45:21] -rw-r--r--. 2 boincer umatlas 410468502 Nov 27 00:03 EVNT.47483658._003165.pool.root.1
[2025-11-27 11:45:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 11:45:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 11:45:21] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:03 input.tar.gz
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:03 pandaJob.out
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 11:45:21] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:38 boinc_task_state.xml
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas 921191709 Nov 27 10:51 HITS.47556173._001218.pool.root.1
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas        95 Nov 27 10:52 pilot_heartbeat.json
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas      1058 Nov 27 10:52 memory_monitor_summary.json
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas   2009594 Nov 27 10:52 log.47556173._001218.job.log.tgz.1
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas      7949 Nov 27 10:52 heartbeat.json
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas       823 Nov 27 10:53 pilotlog.txt
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas   5118920 Nov 27 10:53 log.47556173._001218.job.log.1
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas       353 Nov 27 10:53 output.list
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:53 runtime_log
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas   7147520 Nov 27 10:53 result.tar.gz
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas       660 Nov 27 10:53 YqZLDmxZLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlqMKDm6AmA5n.diag
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 10:53 runtime_log.err
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 11:45 init_data.xml
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:45 boinc_mmap_file
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:45 wrapper_checkpoint.txt
[2025-11-27 11:45:21] -rw-r--r--. 1 boincer umatlas     21132 Nov 27 11:45 stderr.txt
[2025-11-27 11:45:21] HITS file was successfully produced:
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas 921191709 Nov 27 10:51 shared/HITS.pool.root.1
[2025-11-27 11:45:21]  *** Contents of shared directory: ***
[2025-11-27 11:45:21] total 1308040
[2025-11-27 11:45:21] -rw-r--r--. 2 boincer umatlas 410468502 Nov 27 00:03 ATLAS.root_0
[2025-11-27 11:45:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 11:45:21] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:03 input.tar.gz
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas 921191709 Nov 27 10:51 HITS.pool.root.1
[2025-11-27 11:45:21] -rw-------. 1 boincer umatlas   7147520 Nov 27 10:53 result.tar.gz
11:45:23 (3667409): run_atlas exited; CPU time 246162.604163
11:45:23 (3667409): called boinc_finish(0)

</stderr_txt>
]]>

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