Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:56:52 (24637): wrapper (7.7.26015): starting
04:56:52 (24637): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 04:56:52] Arguments: --nthreads 8
[2025-11-29 04:56:52] Threads: 8
[2025-11-29 04:56:52] Checking for CVMFS
[2025-11-29 04:56:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 04:56:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 04:56:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 04:56:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 04:56:55] 2.11.2.0 19320 82573 111076 153428 0 135 18016997 25165825 2504 130560 11 27266445 99.880 17604504 1613 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 04:56:55] CVMFS is ok
[2025-11-29 04:56:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 04:56:55] Checking for apptainer binary...
[2025-11-29 04:56:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 04:56:55] Running /usr/bin/apptainer --version
[2025-11-29 04:56:55] apptainer version 1.3.2-1.el7
[2025-11-29 04:56:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 04:57:11] cg-vwn360.simple-grid.lan
[2025-11-29 04:57:11] apptainer works
[2025-11-29 04:57:11] Set ATHENA_PROC_NUMBER=8
[2025-11-29 04:57:11] Set ATHENA_CORE_NUMBER=8
[2025-11-29 04:57:11] Starting ATLAS job with PandaID=6896922959
[2025-11-29 04:57:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 05:16:46]  *** The last 200 lines of the pilot log: ***
[2025-11-30 05:16:47] 2025-11-30 04:15:43,325 | INFO     | time since job start (87278s) is within the limit (172800.0s)
[2025-11-30 05:16:47] 2025-11-30 04:15:44,534 | INFO     | PID=28478 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 05:16:47] 2025-11-30 04:15:44,534 | INFO     | .. there are 9 such processes running
[2025-11-30 05:16:47] 2025-11-30 04:15:45,020 | INFO     | monitor loop #5865: job 0:6896922959 is in state 'finished'
[2025-11-30 05:16:47] 2025-11-30 04:15:45,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:16:47] 2025-11-30 04:15:45,534 | INFO     | time since job start (87280s) is within the limit (172800.0s)
[2025-11-30 05:16:47] 2025-11-30 04:15:47,525 | INFO     | monitor loop #5866: job 0:6896922959 is in state 'finished'
[2025-11-30 05:16:47] 2025-11-30 04:15:47,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:16:47] 2025-11-30 04:15:47,541 | INFO     | time since job start (87282s) is within the limit (172800.0s)
[2025-11-30 05:16:47] 2025-11-30 04:15:49,548 | INFO     | time since job start (87284s) is within the limit (172800.0s)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,030 | INFO     | monitor loop #5867: job 0:6896922959 is in state 'finished'
[2025-11-30 05:16:47] 2025-11-30 04:15:50,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,405 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 05:16:47] 2025-11-30 04:15:50,406 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-30 05:16:47] 2025-11-30 04:15:50,408 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6896922959/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,408 | INFO     | extracted standard info from prmon json
[2025-11-30 05:16:47] 2025-11-30 04:15:50,408 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 05:16:47] 2025-11-30 04:15:50,409 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 05:16:47] 2025-11-30 04:15:50,443 | INFO     | fitting pss+swap vs Time
[2025-11-30 05:16:47] 2025-11-30 04:15:50,445 | INFO     | sum of square deviations: 889734164920.9553
[2025-11-30 05:16:47] 2025-11-30 04:15:50,535 | INFO     | sum of deviations: 3001997548899.713
[2025-11-30 05:16:47] 2025-11-30 04:15:50,535 | INFO     | mean x: 1764432676.1062632
[2025-11-30 05:16:47] 2025-11-30 04:15:50,535 | INFO     | mean y: 2850661.829697396
[2025-11-30 05:16:47] 2025-11-30 04:15:50,535 | INFO     | intersect: -5950413557.646618
[2025-11-30 05:16:47] 2025-11-30 04:15:50,537 | INFO     | chi2: 21.356912020967282
[2025-11-30 05:16:47] 2025-11-30 04:15:50,539 | INFO     | sum of square deviations: 880375659594.8127
[2025-11-30 05:16:47] 2025-11-30 04:15:50,619 | INFO     | sum of deviations: 3485091996915.0225
[2025-11-30 05:16:47] 2025-11-30 04:15:50,619 | INFO     | mean x: 1764432523.6101694
[2025-11-30 05:16:47] 2025-11-30 04:15:50,619 | INFO     | mean y: 2858533.429378531
[2025-11-30 05:16:47] 2025-11-30 04:15:50,619 | INFO     | intersect: -6981898030.558899
[2025-11-30 05:16:47] 2025-11-30 04:15:50,621 | INFO     | chi2: 18.00499348905722
[2025-11-30 05:16:47] 2025-11-30 04:15:50,621 | INFO     | current chi2=18.00499348905722 (change=15.694771456750372 %)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,621 | INFO     | right removable region: 1415
[2025-11-30 05:16:47] 2025-11-30 04:15:50,623 | INFO     | sum of square deviations: 880374700674.813
[2025-11-30 05:16:47] 2025-11-30 04:15:50,697 | INFO     | sum of deviations: 2434990558026.867
[2025-11-30 05:16:47] 2025-11-30 04:15:50,698 | INFO     | mean x: 1764432828.6101694
[2025-11-30 05:16:47] 2025-11-30 04:15:50,698 | INFO     | mean y: 2859899.3983050846
[2025-11-30 05:16:47] 2025-11-30 04:15:50,698 | INFO     | intersect: -4877309049.851598
[2025-11-30 05:16:47] 2025-11-30 04:15:50,706 | INFO     | chi2: 17.14929699805024
[2025-11-30 05:16:47] 2025-11-30 04:15:50,706 | INFO     | current chi2=17.14929699805024 (change=19.701420405656915 %)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,706 | INFO     | left removable region: 10
[2025-11-30 05:16:47] 2025-11-30 04:15:50,708 | INFO     | sum of square deviations: 860016535773.1512
[2025-11-30 05:16:47] 2025-11-30 04:15:50,786 | INFO     | sum of deviations: 2504019434061.251
[2025-11-30 05:16:47] 2025-11-30 04:15:50,786 | INFO     | mean x: 1764432798.1188612
[2025-11-30 05:16:47] 2025-11-30 04:15:50,786 | INFO     | mean y: 2878384.1601423486
[2025-11-30 05:16:47] 2025-11-30 04:15:50,787 | INFO     | intersect: -5134434484.612527
[2025-11-30 05:16:47] 2025-11-30 04:15:50,788 | INFO     | chi2: 9.337876434212019
[2025-11-30 05:16:47] 2025-11-30 04:15:50,789 | INFO     | current memory leak: 2.91 B/s (using 1405 data points, chi2=9.34)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,790 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-30 05:16:47] 2025-11-30 04:15:50,790 | INFO     | ..............................
[2025-11-30 05:16:47] 2025-11-30 04:15:50,790 | INFO     | . Timing measurements:
[2025-11-30 05:16:47] 2025-11-30 04:15:50,790 | INFO     | . get job = 0 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,790 | INFO     | . initial setup = 5 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,791 | INFO     | . payload setup = 156 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,791 | INFO     | . stage-in = 0 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,791 | INFO     | . payload execution = 86836 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,791 | INFO     | . stage-out = 6 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,791 | INFO     | . log creation = 2 s
[2025-11-30 05:16:47] 2025-11-30 04:15:50,791 | INFO     | ..............................
[2025-11-30 05:16:47] 2025-11-30 04:15:51,227 | INFO     | 
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | job summary report
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | --------------------------------------------------
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | PanDA job id: 6896922959
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | task id: 47556161
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | errors: (none)
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | pilot state: finished 
[2025-11-30 05:16:47] 2025-11-30 04:15:51,228 | INFO     | transexitcode: 0
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | exeerrorcode: 0
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | exeerrordiag: 
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | exitcode: 0
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | exitmsg: OK
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | cpuconsumptiontime: 327896 s
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | nevents: 1000
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | neventsw: 0
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | pid: 2685
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | pgrp: 2685
[2025-11-30 05:16:47] 2025-11-30 04:15:51,229 | INFO     | corecount: 8
[2025-11-30 05:16:47] 2025-11-30 04:15:51,230 | INFO     | event service: False
[2025-11-30 05:16:47] 2025-11-30 04:15:51,230 | INFO     | sizes: {0: 2283980, 1: 2284064, 2: 2284235, 12: 2284263, 23: 2284291, 34: 2284319, 45: 2284475, 55: 2284503, 66: 2284531, 77: 2284559, 87: 2284615, 94: 2285185, 98
[2025-11-30 05:16:47] 2025-11-30 04:15:51,230 | INFO     | --------------------------------------------------
[2025-11-30 05:16:47] 2025-11-30 04:15:51,230 | INFO     | 
[2025-11-30 05:16:47] 2025-11-30 04:15:51,230 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-30 05:16:47] 2025-11-30 04:15:51,573 | INFO     | time since job start (87286s) is within the limit (172800.0s)
[2025-11-30 05:16:47] 2025-11-30 04:15:51,837 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,837 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 05:16:47] 2025-11-30 04:15:51,839 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,840 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 05:16:47] 2025-11-30 04:15:51,840 | INFO     | job 6896922959 has completed (purged errors)
[2025-11-30 05:16:47] 2025-11-30 04:15:51,840 | INFO     | overall cleanup function is called
[2025-11-30 05:16:47] 2025-11-30 04:15:52,861 | INFO     | --- collectZombieJob: --- 10, [2685]
[2025-11-30 05:16:47] 2025-11-30 04:15:52,862 | INFO     | zombie collector waiting for pid 2685
[2025-11-30 05:16:47] 2025-11-30 04:15:52,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 05:16:47] 2025-11-30 04:15:52,862 | INFO     | collected zombie processes
[2025-11-30 05:16:47] 2025-11-30 04:15:52,862 | INFO     | will attempt to kill all subprocesses of pid=2685
[2025-11-30 05:16:47] 2025-11-30 04:15:52,995 | INFO     | process IDs to be killed: [2685] (in reverse order)
[2025-11-30 05:16:47] 2025-11-30 04:15:53,762 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 05:16:47] 2025-11-30 04:15:53,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 05:16:47] 2025-11-30 04:15:53,765 | INFO     | did not find any defunct processes belonging to 2685
[2025-11-30 05:16:47] 2025-11-30 04:15:53,768 | INFO     | did not find any defunct processes belonging to 2685
[2025-11-30 05:16:47] 2025-11-30 04:15:53,834 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 05:16:47] 2025-11-30 04:15:53,834 | INFO     | ready for new job
[2025-11-30 05:16:47] 2025-11-30 04:15:53,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 05:16:47] 2025-11-30 04:15:53,839 | INFO     | ***************************************
[2025-11-30 05:16:47] 2025-11-30 04:15:53,840 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 05:16:47] 2025-11-30 04:15:53,840 | INFO     | ***************************************
[2025-11-30 05:16:47] 2025-11-30 04:15:53,840 | INFO     | 
[2025-11-30 05:16:47] 2025-11-30 04:15:53,840 | INFO     | pilot is running in a VM
[2025-11-30 05:16:47] 2025-11-30 04:15:53,840 | INFO     | architecture information:
[2025-11-30 05:16:47] 2025-11-30 04:15:53,856 | INFO     | executing command: cat /etc/os-release
[2025-11-30 05:16:47] 2025-11-30 04:15:54,085 | INFO     | cat /etc/os-release:
[2025-11-30 05:16:47] NAME="CentOS Linux"
[2025-11-30 05:16:47] VERSION="7 (Core)"
[2025-11-30 05:16:47] ID="centos"
[2025-11-30 05:16:47] ID_LIKE="rhel fedora"
[2025-11-30 05:16:47] VERSION_ID="7"
[2025-11-30 05:16:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 05:16:47] ANSI_COLOR="0;31"
[2025-11-30 05:16:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 05:16:47] HOME_URL="https://www.centos.org/"
[2025-11-30 05:16:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 05:16:47] 
[2025-11-30 05:16:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 05:16:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 05:16:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 05:16:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 05:16:47] 
[2025-11-30 05:16:47] 2025-11-30 04:15:54,085 | INFO     | ***************************************
[2025-11-30 05:16:47] 2025-11-30 04:15:54,589 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-30 05:16:47] 2025-11-30 04:15:54,831 | INFO     | sufficient remaining disk space (487788118016 B)
[2025-11-30 05:16:47] 2025-11-30 04:15:54,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 05:16:47] 2025-11-30 04:15:54,832 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 05:16:47] 2025-11-30 04:15:54,832 | INFO     | update_server=False
[2025-11-30 05:16:47] 2025-11-30 04:15:54,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 05:16:47] 2025-11-30 04:15:54,989 | INFO     | all data control threads have been joined
[2025-11-30 05:16:47] 2025-11-30 04:15:55,045 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 05:16:47] 2025-11-30 04:15:55,046 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 05:16:47] 2025-11-30 04:15:55,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:16:47] 2025-11-30 04:15:55,046 | INFO     | will abort loop
[2025-11-30 05:16:47] 2025-11-30 04:15:55,070 | INFO     | all payload control threads have been joined
[2025-11-30 05:16:47] 2025-11-30 04:15:55,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 05:16:47] 2025-11-30 04:15:55,836 | INFO     | all job control threads have been joined
[2025-11-30 05:16:47] 2025-11-30 04:15:55,837 | INFO     | [job] retrieve thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:55,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:16:47] 2025-11-30 04:15:55,975 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:55,988 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:55,995 | INFO     | [data] control thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,051 | INFO     | [job] job monitor thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,076 | INFO     | [payload] control thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,208 | INFO     | [payload] validate_post thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,495 | INFO     | [job] validate thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,785 | INFO     | [data] copytool_in thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,843 | INFO     | [job] control thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:56,933 | INFO     | [job] queue monitor thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:57,160 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:57,380 | INFO     | [data] copytool_out thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:57,428 | INFO     | [payload] failed_post thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:15:57,546 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 05:16:47] 2025-11-30 04:16:01,555 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:16:04,963 | INFO     | job.realtimelogging is not enabled
[2025-11-30 05:16:47] 2025-11-30 04:16:05,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 05:16:47] 2025-11-30 04:16:24,825 | INFO     | PID=28478 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 05:16:47] 2025-11-30 04:16:24,825 | INFO     | .. there are 9 such processes running
[2025-11-30 05:16:47] 2025-11-30 04:16:24,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 05:16:47] 2025-11-30 04:16:24,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 05:16:47] 2025-11-30 04:16:24,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 05:16:47] 2025-11-30 04:16:36,854 | INFO     | [monitor] cgroup control has ended
[2025-11-30 05:16:47] 2025-11-30 04:16:37,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372927059776)>', '<ExcThread(monitor, started 140372206413568)>']
[2025-11-30 05:16:47] 2025-11-30 04:16:37,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 05:16:47] 2025-11-30 04:16:37,903 | INFO     | [monitor] control thread has ended
[2025-11-30 05:16:47] 2025-11-30 04:16:42,600 | INFO     | all workflow threads have been joined
[2025-11-30 05:16:47] 2025-11-30 04:16:42,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 05:16:47] 2025-11-30 04:16:42,601 | INFO     | traces error code: 0
[2025-11-30 05:16:47] 2025-11-30 04:16:42,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 05:16:47] 2025-11-30 04:16:42,887 [wrapper] ==== pilot stdout END ====
[2025-11-30 05:16:47] 2025-11-30 04:16:42,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 05:16:47] 2025-11-30 04:16:43,072 [wrapper] pilotpid: 28478
[2025-11-30 05:16:47] 2025-11-30 04:16:43,152 [wrapper] Pilot exit status: 0
[2025-11-30 05:16:47] 2025-11-30 04:16:43,442 [wrapper] pandaids: 6896922959
[2025-11-30 05:16:47] 2025-11-30 04:16:44,199 [wrapper] cleanup supervisor_pilot 11404 28479
[2025-11-30 05:16:47] 2025-11-30 04:16:44,289 [wrapper] Test setup, not cleaning
[2025-11-30 05:16:47] 2025-11-30 04:16:44,371 [wrapper] apfmon messages muted
[2025-11-30 05:16:47] 2025-11-30 04:16:44,426 [wrapper] ==== wrapper stdout END ====
[2025-11-30 05:16:47] 2025-11-30 04:16:44,479 [wrapper] ==== wrapper stderr END ====
[2025-11-30 05:16:47]  *** Error codes and diagnostics ***
[2025-11-30 05:16:47]     "exeErrorCode": 0,
[2025-11-30 05:16:47]     "exeErrorDiag": "",
[2025-11-30 05:16:47]     "pilotErrorCode": 0,
[2025-11-30 05:16:47]     "pilotErrorDiag": "",
[2025-11-30 05:16:47]  *** Listing of results directory ***
[2025-11-30 05:16:47] total 1361188
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc      5112 Nov 25 12:16 queuedata.json
[2025-11-30 05:16:47] -rwx------. 1 boinc boinc     36292 Nov 25 12:16 runpilot2-wrapper.sh
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc       100 Nov 29 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 05:16:47] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 04:56 run_atlas
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc       105 Nov 29 04:56 job.xml
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc      6391 Nov 29 04:56 init_data.xml
[2025-11-30 05:16:47] -rw-r--r--. 2 boinc boinc 413930896 Nov 29 04:56 EVNT.47483658._002146.pool.root.1
[2025-11-30 05:16:47] -rw-r--r--. 2 boinc boinc     15847 Nov 29 04:56 start_atlas.sh
[2025-11-30 05:16:47] drwxrwx--x. 2 boinc boinc        68 Nov 29 04:56 shared
[2025-11-30 05:16:47] -rw-r--r--. 2 boinc boinc    590097 Nov 29 04:56 input.tar.gz
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc         0 Nov 29 04:56 boinc_lockfile
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc      2781 Nov 29 04:57 pandaJob.out
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc    991834 Nov 29 05:01 agis_schedconf.cvmfs.json
[2025-11-30 05:16:47] drwx------. 5 boinc boinc      4096 Nov 29 05:01 pilot3
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc       533 Nov 30 04:49 boinc_task_state.xml
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc 947818719 Nov 30 05:12 HITS.47556161._001291.pool.root.1
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc      1029 Nov 30 05:14 memory_monitor_summary.json
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc   1516240 Nov 30 05:14 agis_ddmendpoints.agis.ALL.json
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc   2493015 Nov 30 05:14 log.47556161._001291.job.log.tgz.1
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc      7950 Nov 30 05:15 heartbeat.json
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc        95 Nov 30 05:16 pilot_heartbeat.json
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc      8192 Nov 30 05:16 boinc_mmap_file
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc        29 Nov 30 05:16 wrapper_checkpoint.txt
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc      5142 Nov 30 05:16 pilotlog.txt
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc  11605253 Nov 30 05:16 log.47556161._001291.job.log.1
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc       353 Nov 30 05:16 output.list
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc       620 Nov 30 05:16 runtime_log
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc  14120960 Nov 30 05:16 result.tar.gz
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc      8817 Nov 30 05:16 runtime_log.err
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc       662 Nov 30 05:16 MJ3KDmWD6h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrRJKDmvEbSon.diag
[2025-11-30 05:16:47] -rw-r--r--. 1 boinc boinc     21436 Nov 30 05:16 stderr.txt
[2025-11-30 05:16:47] HITS file was successfully produced:
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc 947818719 Nov 30 05:12 shared/HITS.pool.root.1
[2025-11-30 05:16:47]  *** Contents of shared directory: ***
[2025-11-30 05:16:47] total 1344228
[2025-11-30 05:16:47] -rw-r--r--. 2 boinc boinc 413930896 Nov 29 04:56 ATLAS.root_0
[2025-11-30 05:16:47] -rw-r--r--. 2 boinc boinc     15847 Nov 29 04:56 start_atlas.sh
[2025-11-30 05:16:47] -rw-r--r--. 2 boinc boinc    590097 Nov 29 04:56 input.tar.gz
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc 947818719 Nov 30 05:12 HITS.pool.root.1
[2025-11-30 05:16:47] -rw-------. 1 boinc boinc  14120960 Nov 30 05:16 result.tar.gz
05:16:48 (24637): run_atlas exited; CPU time 328544.328306
05:16:48 (24637): called boinc_finish(0)

</stderr_txt>
]]>

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