Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:22 (2032907): wrapper (7.7.26015): starting
00:02:22 (2032907): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:22] Arguments: --nthreads 9
[2025-11-27 00:02:22] Threads: 9
[2025-11-27 00:02:22] Checking for CVMFS
[2025-11-27 00:02:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:24] 2.13.3.0 11836 29565 357296 153347 0 555 17847758 32935937 47585 16776704 0 131007928 99.527 149703884 35074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:24] CVMFS is ok
[2025-11-27 00:02:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:24] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:24] Checking for apptainer binary...
[2025-11-27 00:02:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:24] Running /usr/bin/apptainer --version
[2025-11-27 00:02:24] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:25] c6-2-11-1.aglt2.org
[2025-11-27 00:02:25] apptainer works
[2025-11-27 00:02:25] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:25] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:25] Starting ATLAS job with PandaID=6898120696
[2025-11-27 00:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:19:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:19:18] 2025-11-28 00:18:31,659 | INFO     | monitor loop #3142: job 0:6898120696 is in state 'finished'
[2025-11-27 19:19:18] 2025-11-28 00:18:31,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:19:18] 2025-11-28 00:18:32,879 | INFO     | time since job start (69293s) is within the limit (172800.0s)
[2025-11-27 19:19:18] 2025-11-28 00:18:34,164 | INFO     | monitor loop #3143: job 0:6898120696 is in state 'finished'
[2025-11-27 19:19:18] 2025-11-28 00:18:34,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:19:18] 2025-11-28 00:18:34,903 | INFO     | time since job start (69295s) is within the limit (172800.0s)
[2025-11-27 19:19:18] 2025-11-28 00:18:36,693 | INFO     | monitor loop #3144: job 0:6898120696 is in state 'finished'
[2025-11-27 19:19:18] 2025-11-28 00:18:36,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:19:18] 2025-11-28 00:18:36,909 | INFO     | time since job start (69297s) is within the limit (172800.0s)
[2025-11-27 19:19:18] 2025-11-28 00:18:38,780 [wrapper] supervise_pilot (15 min periods counter: 78)
[2025-11-27 19:19:18] 2025-11-28 00:18:39,199 | INFO     | monitor loop #3145: job 0:6898120696 is in state 'finished'
[2025-11-27 19:19:18] 2025-11-28 00:18:39,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:19:18] 2025-11-28 00:18:40,904 | INFO     | PID=2050815 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:19:18] 2025-11-28 00:18:40,905 | INFO     | .. there are 59 such processes running
[2025-11-27 19:19:18] 2025-11-28 00:18:41,724 | INFO     | monitor loop #3146: job 0:6898120696 is in state 'finished'
[2025-11-27 19:19:18] 2025-11-28 00:18:41,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:19:18] 2025-11-28 00:18:41,906 | INFO     | time since job start (69302s) is within the limit (172800.0s)
[2025-11-27 19:19:18] 2025-11-28 00:18:42,086 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:19:18] 2025-11-28 00:18:42,120 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2684.2879895833325
[2025-11-27 19:19:18] 2025-11-28 00:18:42,178 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6898120696/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:19:18] 2025-11-28 00:18:42,179 | INFO     | extracted standard info from prmon json
[2025-11-27 19:19:18] 2025-11-28 00:18:42,179 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:19:18] 2025-11-28 00:18:42,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:19:18] 2025-11-28 00:18:42,202 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:19:18] 2025-11-28 00:18:42,204 | INFO     | sum of square deviations: 450982032751.97046
[2025-11-27 19:19:18] 2025-11-28 00:18:42,297 | INFO     | sum of deviations: 3075255267729.8247
[2025-11-27 19:19:18] 2025-11-28 00:18:42,297 | INFO     | mean x: 1764254509.3000882
[2025-11-27 19:19:18] 2025-11-28 00:18:42,297 | INFO     | mean y: 3002616.703442189
[2025-11-27 19:19:18] 2025-11-28 00:18:42,297 | INFO     | intersect: -12027483254.837051
[2025-11-27 19:19:18] 2025-11-28 00:18:42,315 | INFO     | chi2: 16.064024809497827
[2025-11-27 19:19:18] 2025-11-28 00:18:42,317 | INFO     | sum of square deviations: 445038381215.4009
[2025-11-27 19:19:18] 2025-11-28 00:18:42,457 | INFO     | sum of deviations: 3477998231480.052
[2025-11-27 19:19:18] 2025-11-28 00:18:42,458 | INFO     | mean x: 1764254356.8102837
[2025-11-27 19:19:18] 2025-11-28 00:18:42,458 | INFO     | mean y: 3012947.8226950355
[2025-11-27 19:19:18] 2025-11-28 00:18:42,458 | INFO     | intersect: -13784727148.00794
[2025-11-27 19:19:18] 2025-11-28 00:18:42,459 | INFO     | chi2: 12.799493383560469
[2025-11-27 19:19:18] 2025-11-28 00:18:42,460 | INFO     | current chi2=12.799493383560469 (change=20.32200189336865 %)
[2025-11-27 19:19:18] 2025-11-28 00:18:42,460 | INFO     | right removable region: 1127
[2025-11-27 19:19:18] 2025-11-28 00:18:42,478 | INFO     | sum of square deviations: 445036791555.3995
[2025-11-27 19:19:18] 2025-11-28 00:18:42,617 | INFO     | sum of deviations: 2611532454611.348
[2025-11-27 19:19:18] 2025-11-28 00:18:42,618 | INFO     | mean x: 1764254661.8102837
[2025-11-27 19:19:18] 2025-11-28 00:18:42,618 | INFO     | mean y: 3014509.814716312
[2025-11-27 19:19:18] 2025-11-28 00:18:42,618 | INFO     | intersect: -10349856072.893906
[2025-11-27 19:19:18] 2025-11-28 00:18:42,619 | INFO     | chi2: 12.057671089678218
[2025-11-27 19:19:18] 2025-11-28 00:18:42,620 | INFO     | current chi2=12.057671089678218 (change=24.939912427493635 %)
[2025-11-27 19:19:18] 2025-11-28 00:18:42,620 | INFO     | left removable region: 10
[2025-11-27 19:19:18] 2025-11-28 00:18:42,637 | INFO     | sum of square deviations: 432143521738.1106
[2025-11-27 19:19:18] 2025-11-28 00:18:42,785 | INFO     | sum of deviations: 2689539353637.4844
[2025-11-27 19:19:18] 2025-11-28 00:18:42,785 | INFO     | mean x: 1764254631.333035
[2025-11-27 19:19:18] 2025-11-28 00:18:42,786 | INFO     | mean y: 3038234.4637421663
[2025-11-27 19:19:18] 2025-11-28 00:18:42,786 | INFO     | intersect: -10977184821.345465
[2025-11-27 19:19:18] 2025-11-28 00:18:42,787 | INFO     | chi2: 4.757039427943674
[2025-11-27 19:19:18] 2025-11-28 00:18:42,787 | INFO     | current memory leak: 6.22 B/s (using 1117 data points, chi2=4.76)
[2025-11-27 19:19:18] 2025-11-28 00:18:42,804 | INFO     | could have reported an average CPU frequency of 2665 MHz (41 samples)
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | ..............................
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . Timing measurements:
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . get job = 0 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . initial setup = 6 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . payload setup = 55 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . stage-in = 0 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . payload execution = 69127 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . stage-out = 12 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | . log creation = 4 s
[2025-11-27 19:19:18] 2025-11-28 00:18:42,805 | INFO     | ..............................
[2025-11-27 19:19:18] 2025-11-28 00:18:43,383 | INFO     | 
[2025-11-27 19:19:18] 2025-11-28 00:18:43,383 | INFO     | job summary report
[2025-11-27 19:19:18] 2025-11-28 00:18:43,383 | INFO     | --------------------------------------------------
[2025-11-27 19:19:18] 2025-11-28 00:18:43,383 | INFO     | PanDA job id: 6898120696
[2025-11-27 19:19:18] 2025-11-28 00:18:43,383 | INFO     | task id: 47556161
[2025-11-27 19:19:18] 2025-11-28 00:18:43,383 | INFO     | errors: (none)
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | pilot state: finished 
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | transexitcode: 0
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | exeerrorcode: 0
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | exeerrordiag: 
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | exitcode: 0
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | exitmsg: OK
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | cpuconsumptiontime: 258848 s
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | nevents: 1000
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | neventsw: 0
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | pid: 2087106
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | pgrp: 2087106
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | corecount: 9
[2025-11-27 19:19:18] 2025-11-28 00:18:43,384 | INFO     | event service: False
[2025-11-27 19:19:18] 2025-11-28 00:18:43,385 | INFO     | sizes: {0: 2284037, 2: 2284093, 3: 2284149, 4: 2284320, 5: 2284348, 15: 2284404, 27: 2284560, 37: 2284850, 38: 2284878, 69187: 2339730, 69188: 2339729, 69202: 2349
[2025-11-27 19:19:18] 2025-11-28 00:18:43,385 | INFO     | --------------------------------------------------
[2025-11-27 19:19:18] 2025-11-28 00:18:43,385 | INFO     | 
[2025-11-27 19:19:18] 2025-11-28 00:18:43,385 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 19:19:18] 2025-11-28 00:18:43,576 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,577 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:19:18] 2025-11-28 00:18:43,580 | INFO     | job 6898120696 has completed (purged errors)
[2025-11-27 19:19:18] 2025-11-28 00:18:43,580 | INFO     | overall cleanup function is called
[2025-11-27 19:19:18] 2025-11-28 00:18:44,619 | INFO     | --- collectZombieJob: --- 10, [2087106]
[2025-11-27 19:19:18] 2025-11-28 00:18:44,619 | INFO     | zombie collector waiting for pid 2087106
[2025-11-27 19:19:18] 2025-11-28 00:18:44,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:19:18] 2025-11-28 00:18:44,619 | INFO     | collected zombie processes
[2025-11-27 19:19:18] 2025-11-28 00:18:44,620 | INFO     | will attempt to kill all subprocesses of pid=2087106
[2025-11-27 19:19:18] 2025-11-28 00:18:46,539 | INFO     | process IDs to be killed: [2087106] (in reverse order)
[2025-11-27 19:19:18] 2025-11-28 00:18:46,900 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:19:18] 2025-11-28 00:18:46,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:19:18] 2025-11-28 00:18:46,958 | INFO     | did not find any defunct processes belonging to 2087106
[2025-11-27 19:19:18] 2025-11-28 00:18:47,078 | INFO     | did not find any defunct processes belonging to 2087106
[2025-11-27 19:19:18] 2025-11-28 00:18:47,083 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:19:18] 2025-11-28 00:18:47,083 | INFO     | ready for new job
[2025-11-27 19:19:18] 2025-11-28 00:18:47,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:19:18] 2025-11-28 00:18:47,100 | INFO     | ***************************************
[2025-11-27 19:19:18] 2025-11-28 00:18:47,101 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:19:18] 2025-11-28 00:18:47,101 | INFO     | ***************************************
[2025-11-27 19:19:18] 2025-11-28 00:18:47,101 | INFO     | 
[2025-11-27 19:19:18] 2025-11-28 00:18:47,131 | INFO     | architecture information:
[2025-11-27 19:19:18] 2025-11-28 00:18:47,143 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:19:18] 2025-11-28 00:18:47,213 | INFO     | cat /etc/os-release:
[2025-11-27 19:19:18] NAME="CentOS Linux"
[2025-11-27 19:19:18] VERSION="7 (Core)"
[2025-11-27 19:19:18] ID="centos"
[2025-11-27 19:19:18] ID_LIKE="rhel fedora"
[2025-11-27 19:19:18] VERSION_ID="7"
[2025-11-27 19:19:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:19:18] ANSI_COLOR="0;31"
[2025-11-27 19:19:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:19:18] HOME_URL="https://www.centos.org/"
[2025-11-27 19:19:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:19:18] 
[2025-11-27 19:19:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:19:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:19:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:19:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:19:18] 
[2025-11-27 19:19:18] 2025-11-28 00:18:47,214 | INFO     | ***************************************
[2025-11-27 19:19:18] 2025-11-28 00:18:47,716 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 19:19:18] 2025-11-28 00:18:47,776 | INFO     | sufficient remaining disk space (87626350592 B)
[2025-11-27 19:19:18] 2025-11-28 00:18:47,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:19:18] 2025-11-28 00:18:47,778 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:19:18] 2025-11-28 00:18:47,778 | INFO     | update_server=False
[2025-11-27 19:19:18] 2025-11-28 00:18:47,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:19:18] 2025-11-28 00:18:47,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:19:18] 2025-11-28 00:18:47,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:19:18] 2025-11-28 00:18:47,781 | INFO     | aborting loop
[2025-11-27 19:19:18] 2025-11-28 00:18:48,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:19:18] 2025-11-28 00:18:48,507 | INFO     | all job control threads have been joined
[2025-11-27 19:19:18] 2025-11-28 00:18:48,770 | INFO     | all data control threads have been joined
[2025-11-27 19:19:18] 2025-11-28 00:18:48,785 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:48,795 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,059 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,083 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,084 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:19:18] 2025-11-28 00:18:49,297 | INFO     | all payload control threads have been joined
[2025-11-27 19:19:18] 2025-11-28 00:18:49,351 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,418 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,530 | INFO     | [job] control thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,587 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,776 | INFO     | [data] control thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,941 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:49,942 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:50,089 | INFO     | [job] validate thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:50,303 | INFO     | [payload] control thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:51,208 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:51,830 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:19:18] 2025-11-28 00:18:54,269 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:19:18] 2025-11-28 00:18:56,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980839225152)>', '<ExcThread(monitor, started 139980340971264)>']
[2025-11-27 19:19:18] 2025-11-28 00:19:01,210 | INFO     | all workflow threads have been joined
[2025-11-27 19:19:18] 2025-11-28 00:19:01,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:19:18] 2025-11-28 00:19:01,211 | INFO     | traces error code: 0
[2025-11-27 19:19:18] 2025-11-28 00:19:01,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:19:18] 2025-11-28 00:19:16,985 | INFO     | PID=2050815 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:19:18] 2025-11-28 00:19:16,985 | INFO     | .. there are 59 such processes running
[2025-11-27 19:19:18] 2025-11-28 00:19:16,986 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:19:18] 2025-11-28 00:19:16,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:19:18] 2025-11-28 00:19:16,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:19:18] 2025-11-28 00:19:16,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:19:18] 2025-11-28 00:19:16,987 | INFO     | [monitor] control thread has ended
[2025-11-27 19:19:18] 2025-11-28 00:19:17,550 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:19:18] 2025-11-28 00:19:17,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:19:18] 2025-11-28 00:19:17,614 [wrapper] pilotpid: 2050815
[2025-11-27 19:19:18] 2025-11-28 00:19:17,645 [wrapper] Pilot exit status: 0
[2025-11-27 19:19:18] 2025-11-28 00:19:17,756 [wrapper] pandaids: 6898120696
[2025-11-27 19:19:18] 2025-11-28 00:19:18,121 [wrapper] cleanup supervisor_pilot 1279483 2050816
[2025-11-27 19:19:18] 2025-11-28 00:19:18,126 [wrapper] Test setup, not cleaning
[2025-11-27 19:19:18] 2025-11-28 00:19:18,145 [wrapper] apfmon messages muted
[2025-11-27 19:19:18] 2025-11-28 00:19:18,156 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:19:18] 2025-11-28 00:19:18,162 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:19:18]  *** Error codes and diagnostics ***
[2025-11-27 19:19:18]     "exeErrorCode": 0,
[2025-11-27 19:19:18]     "exeErrorDiag": "",
[2025-11-27 19:19:18]     "pilotErrorCode": 0,
[2025-11-27 19:19:18]     "pilotErrorDiag": "",
[2025-11-27 19:19:18]  *** Listing of results directory ***
[2025-11-27 19:19:18] total 1328780
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 19:19:18] -rwx------. 1 boincer umatlas     36292 Nov 25 22:46 runpilot2-wrapper.sh
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:19:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-27 19:19:18] -rw-r--r--. 2 boincer umatlas 410116838 Nov 27 00:02 EVNT.47483658._002444.pool.root.1
[2025-11-27 19:19:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 19:19:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-27 19:19:18] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:02 input.tar.gz
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:02 pandaJob.out
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 19:19:18] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas       531 Nov 27 19:00 boinc_task_state.xml
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas 927318106 Nov 27 19:17 HITS.47556161._004268.pool.root.1
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas      1059 Nov 27 19:17 memory_monitor_summary.json
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:18 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas   2264965 Nov 27 19:18 log.47556161._004268.job.log.tgz.1
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas      6877 Nov 27 19:18 init_data.xml
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas      8625 Nov 27 19:18 heartbeat.json
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas        28 Nov 27 19:19 wrapper_checkpoint.txt
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:19 boinc_mmap_file
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas       823 Nov 27 19:19 pilotlog.txt
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas        95 Nov 27 19:19 pilot_heartbeat.json
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas   7389983 Nov 27 19:19 log.47556161._004268.job.log.1
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas       353 Nov 27 19:19 output.list
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:19 runtime_log
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas   9676800 Nov 27 19:19 result.tar.gz
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas       661 Nov 27 19:19 ygELDmteLi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgsJKDmJpxhPo.diag
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 19:19 runtime_log.err
[2025-11-27 19:19:18] -rw-r--r--. 1 boincer umatlas     21883 Nov 27 19:19 stderr.txt
[2025-11-27 19:19:18] HITS file was successfully produced:
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas 927318106 Nov 27 19:17 shared/HITS.pool.root.1
[2025-11-27 19:19:18]  *** Contents of shared directory: ***
[2025-11-27 19:19:18] total 1316152
[2025-11-27 19:19:18] -rw-r--r--. 2 boincer umatlas 410116838 Nov 27 00:02 ATLAS.root_0
[2025-11-27 19:19:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-27 19:19:18] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 00:02 input.tar.gz
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas 927318106 Nov 27 19:17 HITS.pool.root.1
[2025-11-27 19:19:18] -rw-------. 1 boincer umatlas   9676800 Nov 27 19:19 result.tar.gz
19:19:20 (2032907): run_atlas exited; CPU time 261779.963493
19:19:20 (2032907): called boinc_finish(0)

</stderr_txt>
]]>

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