Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:51 (854521): wrapper (7.7.26015): starting
00:00:51 (854521): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:00:51] Arguments: --nthreads 9
[2025-11-27 00:00:51] Threads: 9
[2025-11-27 00:00:51] Checking for CVMFS
[2025-11-27 00:00:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:00:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:00:54] 2.13.3.0 11048 31043 398964 153347 2 404 31705016 32935936 34097 16776704 0 90788299 99.428 132268441 37196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:00:54] CVMFS is ok
[2025-11-27 00:00:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:00:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:00:54] Further information can be found at the LHC@home message board.
[2025-11-27 00:00:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:00:54] Checking for apptainer binary...
[2025-11-27 00:00:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:00:54] Running /usr/bin/apptainer --version
[2025-11-27 00:00:54] apptainer version 1.4.4-1.el9
[2025-11-27 00:00:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:00:55] c6-1-24-2.aglt2.org
[2025-11-27 00:00:55] apptainer works
[2025-11-27 00:00:55] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:00:55] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:00:55] Starting ATLAS job with PandaID=6898120831
[2025-11-27 00:00:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:27:05]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:27:05] 2025-11-28 17:26:09,232 | INFO     | time since job start (131040s) is within the limit (172800.0s)
[2025-11-28 12:27:05] 2025-11-28 17:26:09,403 | INFO     | monitor loop #6581: job 0:6898120831 is in state 'finished'
[2025-11-28 12:27:05] 2025-11-28 17:26:09,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,057 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 12:27:05] 2025-11-28 17:26:10,062 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3062.987053571429
[2025-11-28 12:27:05] 2025-11-28 17:26:10,074 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898120831/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,075 | INFO     | extracted standard info from prmon json
[2025-11-28 12:27:05] 2025-11-28 17:26:10,075 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:27:05] 2025-11-28 17:26:10,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:27:05] 2025-11-28 17:26:10,112 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:27:05] 2025-11-28 17:26:10,115 | INFO     | sum of square deviations: 3064978684996.817
[2025-11-28 12:27:05] 2025-11-28 17:26:10,224 | INFO     | sum of deviations: 13439903257687.564
[2025-11-28 12:27:05] 2025-11-28 17:26:10,226 | INFO     | mean x: 1764285321.8257222
[2025-11-28 12:27:05] 2025-11-28 17:26:10,226 | INFO     | mean y: 3136422.2474370925
[2025-11-28 12:27:05] 2025-11-28 17:26:10,226 | INFO     | intersect: -7733238437.508073
[2025-11-28 12:27:05] 2025-11-28 17:26:10,230 | INFO     | chi2: 14.085810669844536
[2025-11-28 12:27:05] 2025-11-28 17:26:10,233 | INFO     | sum of square deviations: 3043610910875.5396
[2025-11-28 12:27:05] 2025-11-28 17:26:10,576 | INFO     | sum of deviations: 14271888005081.625
[2025-11-28 12:27:05] 2025-11-28 17:26:10,577 | INFO     | mean x: 1764285169.3358245
[2025-11-28 12:27:05] 2025-11-28 17:26:10,577 | INFO     | mean y: 3142359.70294255
[2025-11-28 12:27:05] 2025-11-28 17:26:10,577 | INFO     | intersect: -8269820605.377258
[2025-11-28 12:27:05] 2025-11-28 17:26:10,579 | INFO     | chi2: 10.582966035654788
[2025-11-28 12:27:05] 2025-11-28 17:26:10,579 | INFO     | current chi2=10.582966035654788 (change=24.8678951910718 %)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,579 | INFO     | right removable region: 2140
[2025-11-28 12:27:05] 2025-11-28 17:26:10,582 | INFO     | sum of square deviations: 3043605248245.54
[2025-11-28 12:27:05] 2025-11-28 17:26:10,692 | INFO     | sum of deviations: 12512671544689.756
[2025-11-28 12:27:05] 2025-11-28 17:26:10,692 | INFO     | mean x: 1764285474.3358245
[2025-11-28 12:27:05] 2025-11-28 17:26:10,692 | INFO     | mean y: 3143037.673517048
[2025-11-28 12:27:05] 2025-11-28 17:26:10,692 | INFO     | intersect: -7250072425.848507
[2025-11-28 12:27:05] 2025-11-28 17:26:10,695 | INFO     | chi2: 10.027758506967755
[2025-11-28 12:27:05] 2025-11-28 17:26:10,695 | INFO     | current chi2=10.027758506967755 (change=28.809503819076742 %)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,700 | INFO     | sum of square deviations: 3022331525243.015
[2025-11-28 12:27:05] 2025-11-28 17:26:10,780 | INFO     | sum of deviations: 11752573964428.926
[2025-11-28 12:27:05] 2025-11-28 17:26:10,781 | INFO     | mean x: 1764285626.8455057
[2025-11-28 12:27:05] 2025-11-28 17:26:10,781 | INFO     | mean y: 3148485.727059925
[2025-11-28 12:27:05] 2025-11-28 17:26:10,781 | INFO     | intersect: -6857415006.629536
[2025-11-28 12:27:05] 2025-11-28 17:26:10,783 | INFO     | chi2: 7.412032029667708
[2025-11-28 12:27:05] 2025-11-28 17:26:10,783 | INFO     | current chi2=7.412032029667708 (change=26.084857104232395 %)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,786 | INFO     | sum of square deviations: 3001157933774.333
[2025-11-28 12:27:05] 2025-11-28 17:26:10,864 | INFO     | sum of deviations: 11360395030294.104
[2025-11-28 12:27:05] 2025-11-28 17:26:10,865 | INFO     | mean x: 1764285779.3524168
[2025-11-28 12:27:05] 2025-11-28 17:26:10,865 | INFO     | mean y: 3151309.087752229
[2025-11-28 12:27:05] 2025-11-28 17:26:10,865 | INFO     | intersect: -6675265436.067404
[2025-11-28 12:27:05] 2025-11-28 17:26:10,867 | INFO     | chi2: 6.744971072928599
[2025-11-28 12:27:05] 2025-11-28 17:26:10,867 | INFO     | current chi2=6.744971072928599 (change=8.999704184616357 %)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,867 | INFO     | left removable region: 30
[2025-11-28 12:27:05] 2025-11-28 17:26:10,870 | INFO     | sum of square deviations: 2913317317427.719
[2025-11-28 12:27:05] 2025-11-28 17:26:10,946 | INFO     | sum of deviations: 11675454771969.705
[2025-11-28 12:27:05] 2025-11-28 17:26:10,946 | INFO     | mean x: 1764286053.8744075
[2025-11-28 12:27:05] 2025-11-28 17:26:10,946 | INFO     | mean y: 3163514.9800947867
[2025-11-28 12:27:05] 2025-11-28 17:26:10,946 | INFO     | intersect: -7067416096.654887
[2025-11-28 12:27:05] 2025-11-28 17:26:10,949 | INFO     | chi2: 2.1792104248563233
[2025-11-28 12:27:05] 2025-11-28 17:26:10,949 | INFO     | current memory leak: 4.01 B/s (using 2110 data points, chi2=2.18)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,951 | INFO     | could have reported an average CPU frequency of 3025 MHz (74 samples)
[2025-11-28 12:27:05] 2025-11-28 17:26:10,951 | INFO     | ..............................
[2025-11-28 12:27:05] 2025-11-28 17:26:10,951 | INFO     | . Timing measurements:
[2025-11-28 12:27:05] 2025-11-28 17:26:10,951 | INFO     | . get job = 1 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,951 | INFO     | . initial setup = 5 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,951 | INFO     | . payload setup = 46 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,952 | INFO     | . stage-in = 0 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,952 | INFO     | . payload execution = 130892 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,952 | INFO     | . stage-out = 4 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,952 | INFO     | . log creation = 1 s
[2025-11-28 12:27:05] 2025-11-28 17:26:10,952 | INFO     | ..............................
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | 
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | job summary report
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | --------------------------------------------------
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | PanDA job id: 6898120831
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | task id: 47556161
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | errors: (none)
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:27:05] 2025-11-28 17:26:11,044 | INFO     | pilot state: finished 
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | transexitcode: 0
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | exeerrorcode: 0
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | exeerrordiag: 
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | exitcode: 0
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | exitmsg: OK
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | cpuconsumptiontime: 242791 s
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | nevents: 1000
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | neventsw: 0
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | pid: 912670
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | pgrp: 912670
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | corecount: 9
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | event service: False
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | sizes: {0: 2284092, 1: 2284120, 2: 2284319, 13: 2284319, 24: 2284375, 36: 2284403, 37: 2284821, 47: 2284849, 130943: 2367010, 130948: 2376004, 130950: 2376060, 130
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | --------------------------------------------------
[2025-11-28 12:27:05] 2025-11-28 17:26:11,045 | INFO     | 
[2025-11-28 12:27:05] 2025-11-28 17:26:11,046 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 12:27:05] 2025-11-28 17:26:11,067 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,069 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,069 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,073 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,073 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,073 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,073 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,074 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:27:05] 2025-11-28 17:26:11,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:27:05] 2025-11-28 17:26:11,075 | INFO     | job 6898120831 has completed (purged errors)
[2025-11-28 12:27:05] 2025-11-28 17:26:11,076 | INFO     | overall cleanup function is called
[2025-11-28 12:27:05] 2025-11-28 17:26:12,095 | INFO     | --- collectZombieJob: --- 10, [912670]
[2025-11-28 12:27:05] 2025-11-28 17:26:12,095 | INFO     | zombie collector waiting for pid 912670
[2025-11-28 12:27:05] 2025-11-28 17:26:12,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:27:05] 2025-11-28 17:26:12,096 | INFO     | collected zombie processes
[2025-11-28 12:27:05] 2025-11-28 17:26:12,096 | INFO     | will attempt to kill all subprocesses of pid=912670
[2025-11-28 12:27:05] 2025-11-28 17:26:12,669 | INFO     | process IDs to be killed: [912670] (in reverse order)
[2025-11-28 12:27:05] 2025-11-28 17:26:12,884 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:27:05] 2025-11-28 17:26:12,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:27:05] 2025-11-28 17:26:12,976 | INFO     | did not find any defunct processes belonging to 912670
[2025-11-28 12:27:05] 2025-11-28 17:26:13,074 | INFO     | did not find any defunct processes belonging to 912670
[2025-11-28 12:27:05] 2025-11-28 17:26:13,077 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:27:05] 2025-11-28 17:26:13,077 | INFO     | ready for new job
[2025-11-28 12:27:05] 2025-11-28 17:26:13,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:27:05] 2025-11-28 17:26:13,086 | INFO     | ***************************************
[2025-11-28 12:27:05] 2025-11-28 17:26:13,086 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:27:05] 2025-11-28 17:26:13,086 | INFO     | ***************************************
[2025-11-28 12:27:05] 2025-11-28 17:26:13,086 | INFO     | 
[2025-11-28 12:27:05] 2025-11-28 17:26:13,089 | INFO     | architecture information:
[2025-11-28 12:27:05] 2025-11-28 17:26:13,090 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:27:05] 2025-11-28 17:26:13,106 | INFO     | cat /etc/os-release:
[2025-11-28 12:27:05] NAME="CentOS Linux"
[2025-11-28 12:27:05] VERSION="7 (Core)"
[2025-11-28 12:27:05] ID="centos"
[2025-11-28 12:27:05] ID_LIKE="rhel fedora"
[2025-11-28 12:27:05] VERSION_ID="7"
[2025-11-28 12:27:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:27:05] ANSI_COLOR="0;31"
[2025-11-28 12:27:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:27:05] HOME_URL="https://www.centos.org/"
[2025-11-28 12:27:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:27:05] 
[2025-11-28 12:27:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:27:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:27:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:27:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:27:05] 
[2025-11-28 12:27:05] 2025-11-28 17:26:13,106 | INFO     | ***************************************
[2025-11-28 12:27:05] 2025-11-28 17:26:13,625 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 12:27:05] 2025-11-28 17:26:13,682 | INFO     | sufficient remaining disk space (68876763136 B)
[2025-11-28 12:27:05] 2025-11-28 17:26:13,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:27:05] 2025-11-28 17:26:13,682 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:27:05] 2025-11-28 17:26:13,682 | INFO     | update_server=False
[2025-11-28 12:27:05] 2025-11-28 17:26:13,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:27:05] 2025-11-28 17:26:13,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:27:05] 2025-11-28 17:26:13,683 | INFO     | aborting loop
[2025-11-28 12:27:05] 2025-11-28 17:26:13,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:27:05] 2025-11-28 17:26:14,036 | INFO     | all data control threads have been joined
[2025-11-28 12:27:05] 2025-11-28 17:26:14,688 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:14,689 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:14,737 | INFO     | all payload control threads have been joined
[2025-11-28 12:27:05] 2025-11-28 17:26:14,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:27:05] 2025-11-28 17:26:15,009 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,045 | INFO     | [data] control thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,093 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,218 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,331 | INFO     | all job control threads have been joined
[2025-11-28 12:27:05] 2025-11-28 17:26:15,494 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,742 | INFO     | [payload] control thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,773 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:15,960 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:16,049 | INFO     | [job] validate thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:16,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:27:05] 2025-11-28 17:26:16,337 | INFO     | [job] control thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:16,852 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:17,071 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:17,960 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:27:05] 2025-11-28 17:26:23,527 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:27:05] 2025-11-28 17:26:24,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840088430400)>', '<ExcThread(monitor, started 139839194244864)>']
[2025-11-28 12:27:05] 2025-11-28 17:26:29,398 | INFO     | all workflow threads have been joined
[2025-11-28 12:27:05] 2025-11-28 17:26:29,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:27:05] 2025-11-28 17:26:29,399 | INFO     | traces error code: 0
[2025-11-28 12:27:05] 2025-11-28 17:26:29,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:27:05] 2025-11-28 17:26:43,020 | INFO     | PID=868429 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 12:27:05] 2025-11-28 17:26:43,020 | INFO     | .. there are 47 such processes running
[2025-11-28 12:27:05] 2025-11-28 17:26:43,020 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:27:05] 2025-11-28 17:26:43,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:27:05] 2025-11-28 17:26:43,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:27:05] 2025-11-28 17:26:43,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:27:05] 2025-11-28 17:26:43,021 | INFO     | [monitor] control thread has ended
[2025-11-28 12:27:05] 2025-11-28 17:26:43,163 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:27:05] 2025-11-28 17:26:43,167 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:27:05] 2025-11-28 17:26:43,169 [wrapper] pilotpid: 868429
[2025-11-28 12:27:05] 2025-11-28 17:26:43,171 [wrapper] Pilot exit status: 0
[2025-11-28 12:27:05] 2025-11-28 17:26:43,216 [wrapper] pandaids: 6898120831
[2025-11-28 12:27:05] 2025-11-28 17:26:43,339 [wrapper] cleanup supervisor_pilot 1549106 868430
[2025-11-28 12:27:05] 2025-11-28 17:26:43,342 [wrapper] Test setup, not cleaning
[2025-11-28 12:27:05] 2025-11-28 17:26:43,345 [wrapper] apfmon messages muted
[2025-11-28 12:27:05] 2025-11-28 17:26:43,348 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:27:05] 2025-11-28 17:26:43,355 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:27:05]  *** Error codes and diagnostics ***
[2025-11-28 12:27:05]     "exeErrorCode": 0,
[2025-11-28 12:27:05]     "exeErrorDiag": "",
[2025-11-28 12:27:05]     "pilotErrorCode": 0,
[2025-11-28 12:27:05]     "pilotErrorDiag": "",
[2025-11-28 12:27:05]  *** Listing of results directory ***
[2025-11-28 12:27:05] total 1338076
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:40 queuedata.json
[2025-11-28 12:27:05] -rwx------. 1 boincer umatlas     36292 Nov 25 22:44 runpilot2-wrapper.sh
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:27:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:00 run_atlas
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:00 job.xml
[2025-11-28 12:27:05] -rw-r--r--. 2 boincer umatlas 410142561 Nov 27 00:00 EVNT.47483658._002445.pool.root.1
[2025-11-28 12:27:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:00 shared
[2025-11-28 12:27:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 00:00 input.tar.gz
[2025-11-28 12:27:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:00 boinc_lockfile
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 00:00 pandaJob.out
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas        57 Nov 27 00:00 setup.sh.local
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-28 12:27:05] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas       533 Nov 28 12:10 boinc_task_state.xml
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas      6845 Nov 28 12:22 init_data.xml
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas 920514802 Nov 28 12:25 HITS.47556161._004276.pool.root.1
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas      1059 Nov 28 12:25 memory_monitor_summary.json
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas   1516240 Nov 28 12:25 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas   2974417 Nov 28 12:25 log.47556161._004276.job.log.tgz.1
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas        95 Nov 28 12:25 pilot_heartbeat.json
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas      8636 Nov 28 12:26 heartbeat.json
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas       822 Nov 28 12:26 pilotlog.txt
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas  14829987 Nov 28 12:26 log.47556161._004276.job.log.1
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas       353 Nov 28 12:26 output.list
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas       620 Nov 28 12:26 runtime_log
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas  17827840 Nov 28 12:26 result.tar.gz
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas       664 Nov 28 12:26 wzWLDmjdLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9qMKDmQwFtYm.diag
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas      9349 Nov 28 12:26 runtime_log.err
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas        29 Nov 28 12:27 wrapper_checkpoint.txt
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 12:27 boinc_mmap_file
[2025-11-28 12:27:05] -rw-r--r--. 1 boincer umatlas     21376 Nov 28 12:27 stderr.txt
[2025-11-28 12:27:05] HITS file was successfully produced:
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas 920514802 Nov 28 12:25 shared/HITS.pool.root.1
[2025-11-28 12:27:05]  *** Contents of shared directory: ***
[2025-11-28 12:27:05] total 1317488
[2025-11-28 12:27:05] -rw-r--r--. 2 boincer umatlas 410142561 Nov 27 00:00 ATLAS.root_0
[2025-11-28 12:27:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 00:00 input.tar.gz
[2025-11-28 12:27:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:00 start_atlas.sh
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas 920514802 Nov 28 12:25 HITS.pool.root.1
[2025-11-28 12:27:05] -rw-------. 1 boincer umatlas  17827840 Nov 28 12:26 result.tar.gz
12:27:07 (854521): run_atlas exited; CPU time 246286.127706
12:27:07 (854521): called boinc_finish(0)

</stderr_txt>
]]>

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