Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:01:56 (1020412): wrapper (7.7.26015): starting
23:01:56 (1020412): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:01:56] Arguments: --nthreads 8
[2025-11-26 23:01:56] Threads: 8
[2025-11-26 23:01:56] Checking for CVMFS
[2025-11-26 23:01:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:01:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:01:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:01:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:01:57] 2.10.1.0 4440 252805 171920 153345 2 81 10784367 18432000 3769 130560 2 281336368 99.988 10222100 6505 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-26 23:01:57] CVMFS is ok
[2025-11-26 23:01:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:01:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:01:57] Further information can be found at the LHC@home message board.
[2025-11-26 23:01:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:01:57] Checking for apptainer binary...
[2025-11-26 23:01:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:01:57] Running /usr/bin/apptainer --version
[2025-11-26 23:01:57] apptainer version 1.1.9-1.el8
[2025-11-26 23:01:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:01:57] c-16-31.aglt2.org
[2025-11-26 23:01:57] apptainer works
[2025-11-26 23:01:58] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:01:58] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:01:58] Starting ATLAS job with PandaID=6898120856
[2025-11-26 23:01:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:10:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:10:11] 2025-11-27 22:09:33,422 | INFO     | job 6898120856 has state=finished
[2025-11-27 17:10:11] 2025-11-27 22:09:33,422 | INFO     | preparing for final server update for job 6898120856 in state='finished'
[2025-11-27 17:10:11] 2025-11-27 22:09:33,423 | INFO     | this job has now completed (state=finished)
[2025-11-27 17:10:11] 2025-11-27 22:09:33,423 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 17:10:11] 2025-11-27 22:09:33,423 | INFO     | log transfer has been attempted: DONE
[2025-11-27 17:10:11] 2025-11-27 22:09:33,423 | INFO     | job 6898120856 has finished - writing final server update
[2025-11-27 17:10:11] 2025-11-27 22:09:33,424 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 17:10:11] 2025-11-27 22:09:33,425 | INFO     | executing command: lscpu
[2025-11-27 17:10:11] 2025-11-27 22:09:33,484 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:10:11] 2025-11-27 22:09:34,784 | INFO     | time since job start (65244s) is within the limit (172800.0s)
[2025-11-27 17:10:11] 2025-11-27 22:09:35,337 | INFO     | monitor loop #4638: job 0:6898120856 is in state 'finished'
[2025-11-27 17:10:11] 2025-11-27 22:09:35,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:10:11] 2025-11-27 22:09:36,188 | INFO     | PID=1027148 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 17:10:11] 2025-11-27 22:09:36,188 | INFO     | .. there are 5 such processes running
[2025-11-27 17:10:11] 2025-11-27 22:09:37,190 | INFO     | time since job start (65247s) is within the limit (172800.0s)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,522 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 17:10:11] 2025-11-27 22:09:37,543 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2949.857975
[2025-11-27 17:10:11] 2025-11-27 22:09:37,551 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898120856/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,552 | INFO     | extracted standard info from prmon json
[2025-11-27 17:10:11] 2025-11-27 22:09:37,552 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:10:11] 2025-11-27 22:09:37,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:10:11] 2025-11-27 22:09:37,580 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:10:11] 2025-11-27 22:09:37,582 | INFO     | sum of square deviations: 378802501265.20306
[2025-11-27 17:10:11] 2025-11-27 22:09:37,615 | INFO     | sum of deviations: 32781546723027.656
[2025-11-27 17:10:11] 2025-11-27 22:09:37,615 | INFO     | mean x: 1764248731.1253507
[2025-11-27 17:10:11] 2025-11-27 22:09:37,615 | INFO     | mean y: 4294788.218896165
[2025-11-27 17:10:11] 2025-11-27 22:09:37,615 | INFO     | intersect: -152673689167.16495
[2025-11-27 17:10:11] 2025-11-27 22:09:37,617 | INFO     | chi2: 69.47455173317071
[2025-11-27 17:10:11] 2025-11-27 22:09:37,618 | INFO     | sum of square deviations: 373512098755.1237
[2025-11-27 17:10:11] 2025-11-27 22:09:37,652 | INFO     | sum of deviations: 33330817144195.965
[2025-11-27 17:10:11] 2025-11-27 22:09:37,652 | INFO     | mean x: 1764248578.6259398
[2025-11-27 17:10:11] 2025-11-27 22:09:37,653 | INFO     | mean y: 4310617.761278195
[2025-11-27 17:10:11] 2025-11-27 22:09:37,653 | INFO     | intersect: -157430607734.4844
[2025-11-27 17:10:11] 2025-11-27 22:09:37,654 | INFO     | chi2: 71.36675830976907
[2025-11-27 17:10:11] 2025-11-27 22:09:37,654 | INFO     | current chi2=71.36675830976907 (change=-2.7235966686992215 %)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,655 | INFO     | right removable region: 1063
[2025-11-27 17:10:11] 2025-11-27 22:09:37,656 | INFO     | sum of square deviations: 373512017015.124
[2025-11-27 17:10:11] 2025-11-27 22:09:37,689 | INFO     | sum of deviations: 32266208131193.023
[2025-11-27 17:10:11] 2025-11-27 22:09:37,689 | INFO     | mean x: 1764248883.6259398
[2025-11-27 17:10:11] 2025-11-27 22:09:37,689 | INFO     | mean y: 4309633.5855263155
[2025-11-27 17:10:11] 2025-11-27 22:09:37,690 | INFO     | intersect: -152402089842.43054
[2025-11-27 17:10:11] 2025-11-27 22:09:37,691 | INFO     | chi2: 67.14566069699376
[2025-11-27 17:10:11] 2025-11-27 22:09:37,691 | INFO     | current chi2=67.14566069699376 (change=3.3521497844584482 %)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,691 | INFO     | left removable region: 10
[2025-11-27 17:10:11] 2025-11-27 22:09:37,693 | INFO     | sum of square deviations: 362046924640.94824
[2025-11-27 17:10:11] 2025-11-27 22:09:37,725 | INFO     | sum of deviations: 32564534013812.03
[2025-11-27 17:10:11] 2025-11-27 22:09:37,725 | INFO     | mean x: 1764248853.1272554
[2025-11-27 17:10:11] 2025-11-27 22:09:37,726 | INFO     | mean y: 4335606.768281101
[2025-11-27 17:10:11] 2025-11-27 22:09:37,726 | INFO     | intersect: -158682116000.21063
[2025-11-27 17:10:11] 2025-11-27 22:09:37,727 | INFO     | chi2: 69.15771654565593
[2025-11-27 17:10:11] 2025-11-27 22:09:37,727 | INFO     | current memory leak: 89.95 B/s (using 1053 data points, chi2=69.16)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,729 | INFO     | could have reported an average CPU frequency of 2908 MHz (39 samples)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,729 | INFO     | ..............................
[2025-11-27 17:10:11] 2025-11-27 22:09:37,729 | INFO     | . Timing measurements:
[2025-11-27 17:10:11] 2025-11-27 22:09:37,729 | INFO     | . get job = 0 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,729 | INFO     | . initial setup = 2 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,730 | INFO     | . payload setup = 6 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,730 | INFO     | . stage-in = 0 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,730 | INFO     | . payload execution = 65208 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,730 | INFO     | . stage-out = 3 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,730 | INFO     | . log creation = 0 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,730 | INFO     | ..............................
[2025-11-27 17:10:11] 2025-11-27 22:09:37,877 | INFO     | 
[2025-11-27 17:10:11] 2025-11-27 22:09:37,877 | INFO     | job summary report
[2025-11-27 17:10:11] 2025-11-27 22:09:37,877 | INFO     | --------------------------------------------------
[2025-11-27 17:10:11] 2025-11-27 22:09:37,877 | INFO     | PanDA job id: 6898120856
[2025-11-27 17:10:11] 2025-11-27 22:09:37,877 | INFO     | task id: 47556161
[2025-11-27 17:10:11] 2025-11-27 22:09:37,878 | INFO     | errors: (none)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,878 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:10:11] 2025-11-27 22:09:37,878 | INFO     | pilot state: finished 
[2025-11-27 17:10:11] 2025-11-27 22:09:37,878 | INFO     | transexitcode: 0
[2025-11-27 17:10:11] 2025-11-27 22:09:37,878 | INFO     | exeerrorcode: 0
[2025-11-27 17:10:11] 2025-11-27 22:09:37,878 | INFO     | exeerrordiag: 
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | exitcode: 0
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | exitmsg: OK
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | cpuconsumptiontime: 485143 s
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | nevents: 1000
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | neventsw: 0
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | pid: 1042754
[2025-11-27 17:10:11] 2025-11-27 22:09:37,879 | INFO     | pgrp: 1042754
[2025-11-27 17:10:11] 2025-11-27 22:09:37,880 | INFO     | corecount: 8
[2025-11-27 17:10:11] 2025-11-27 22:09:37,880 | INFO     | event service: False
[2025-11-27 17:10:11] 2025-11-27 22:09:37,880 | INFO     | sizes: {0: 2284087, 1: 2284286, 5: 2284548, 12: 2284604, 65218: 2339400, 65219: 2339427, 65223: 2348605, 65226: 2348661, 65232: 2348907}
[2025-11-27 17:10:11] 2025-11-27 22:09:37,880 | INFO     | --------------------------------------------------
[2025-11-27 17:10:11] 2025-11-27 22:09:37,880 | INFO     | 
[2025-11-27 17:10:11] 2025-11-27 22:09:37,880 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 17:10:11] 2025-11-27 22:09:37,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,904 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,904 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,904 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,904 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,904 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,905 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,905 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:10:11] 2025-11-27 22:09:37,905 | INFO     | job 6898120856 has completed (purged errors)
[2025-11-27 17:10:11] 2025-11-27 22:09:37,906 | INFO     | overall cleanup function is called
[2025-11-27 17:10:11] 2025-11-27 22:09:38,924 | INFO     | --- collectZombieJob: --- 10, [1042754]
[2025-11-27 17:10:11] 2025-11-27 22:09:38,924 | INFO     | zombie collector waiting for pid 1042754
[2025-11-27 17:10:11] 2025-11-27 22:09:38,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:10:11] 2025-11-27 22:09:38,925 | INFO     | collected zombie processes
[2025-11-27 17:10:11] 2025-11-27 22:09:38,925 | INFO     | will attempt to kill all subprocesses of pid=1042754
[2025-11-27 17:10:11] 2025-11-27 22:09:39,250 | INFO     | process IDs to be killed: [1042754] (in reverse order)
[2025-11-27 17:10:11] 2025-11-27 22:09:39,352 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:10:11] 2025-11-27 22:09:39,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:10:11] 2025-11-27 22:09:39,370 | INFO     | did not find any defunct processes belonging to 1042754
[2025-11-27 17:10:11] 2025-11-27 22:09:39,386 | INFO     | did not find any defunct processes belonging to 1042754
[2025-11-27 17:10:11] 2025-11-27 22:09:39,388 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:10:11] 2025-11-27 22:09:39,388 | INFO     | ready for new job
[2025-11-27 17:10:11] 2025-11-27 22:09:39,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:10:11] 2025-11-27 22:09:39,395 | INFO     | ***************************************
[2025-11-27 17:10:11] 2025-11-27 22:09:39,395 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:10:11] 2025-11-27 22:09:39,395 | INFO     | ***************************************
[2025-11-27 17:10:11] 2025-11-27 22:09:39,396 | INFO     | 
[2025-11-27 17:10:11] 2025-11-27 22:09:39,410 | INFO     | architecture information:
[2025-11-27 17:10:11] 2025-11-27 22:09:39,413 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:10:11] 2025-11-27 22:09:39,426 | INFO     | cat /etc/os-release:
[2025-11-27 17:10:11] NAME="CentOS Linux"
[2025-11-27 17:10:11] VERSION="7 (Core)"
[2025-11-27 17:10:11] ID="centos"
[2025-11-27 17:10:11] ID_LIKE="rhel fedora"
[2025-11-27 17:10:11] VERSION_ID="7"
[2025-11-27 17:10:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:10:11] ANSI_COLOR="0;31"
[2025-11-27 17:10:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:10:11] HOME_URL="https://www.centos.org/"
[2025-11-27 17:10:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:10:11] 
[2025-11-27 17:10:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:10:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:10:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:10:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:10:11] 
[2025-11-27 17:10:11] 2025-11-27 22:09:39,426 | INFO     | ***************************************
[2025-11-27 17:10:11] 2025-11-27 22:09:39,929 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 17:10:11] 2025-11-27 22:09:39,945 | INFO     | sufficient remaining disk space (99002351616 B)
[2025-11-27 17:10:11] 2025-11-27 22:09:39,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:10:11] 2025-11-27 22:09:39,946 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:10:11] 2025-11-27 22:09:39,946 | INFO     | update_server=False
[2025-11-27 17:10:11] 2025-11-27 22:09:39,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:10:11] 2025-11-27 22:09:40,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:10:11] 2025-11-27 22:09:40,348 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 17:10:11] 2025-11-27 22:09:40,348 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 17:10:11] 2025-11-27 22:09:40,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:10:11] 2025-11-27 22:09:40,349 | INFO     | will abort loop
[2025-11-27 17:10:11] 2025-11-27 22:09:40,574 | INFO     | all job control threads have been joined
[2025-11-27 17:10:11] 2025-11-27 22:09:40,945 | INFO     | all data control threads have been joined
[2025-11-27 17:10:11] 2025-11-27 22:09:40,951 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:40,961 | INFO     | all payload control threads have been joined
[2025-11-27 17:10:11] 2025-11-27 22:09:41,008 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:41,354 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:41,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:41,579 | INFO     | [job] control thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:41,950 | INFO     | [data] control thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:41,966 | INFO     | [payload] control thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,034 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,136 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,175 | INFO     | [job] validate thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,182 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,184 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,267 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,269 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:42,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:10:11] 2025-11-27 22:09:42,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:10:11] 2025-11-27 22:09:43,891 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:09:46,706 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:10:11] 2025-11-27 22:10:00,406 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:10:11] 2025-11-27 22:10:00,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140634155263808)>', '<ExcThread(monitor, started 140633704478464)>']
[2025-11-27 17:10:11] 2025-11-27 22:10:05,738 | INFO     | all workflow threads have been joined
[2025-11-27 17:10:11] 2025-11-27 22:10:05,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:10:11] 2025-11-27 22:10:05,738 | INFO     | traces error code: 0
[2025-11-27 17:10:11] 2025-11-27 22:10:05,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:10:11] 2025-11-27 22:10:10,607 | INFO     | PID=1027148 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:10:11] 2025-11-27 22:10:10,607 | INFO     | .. there are 5 such processes running
[2025-11-27 17:10:11] 2025-11-27 22:10:10,607 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:10:11] 2025-11-27 22:10:10,608 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:10:11] 2025-11-27 22:10:10,608 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:10:11] 2025-11-27 22:10:10,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:10:11] 2025-11-27 22:10:10,608 | INFO     | [monitor] control thread has ended
[2025-11-27 17:10:11] 2025-11-27 22:10:10,740 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:10:11] 2025-11-27 22:10:10,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:10:11] 2025-11-27 22:10:10,745 [wrapper] pilotpid: 1027148
[2025-11-27 17:10:11] 2025-11-27 22:10:10,747 [wrapper] Pilot exit status: 0
[2025-11-27 17:10:11] 2025-11-27 22:10:10,757 [wrapper] pandaids: 6898120856
[2025-11-27 17:10:11] 2025-11-27 22:10:10,817 [wrapper] cleanup supervisor_pilot 2779743 1027149
[2025-11-27 17:10:11] 2025-11-27 22:10:10,820 [wrapper] Test setup, not cleaning
[2025-11-27 17:10:11] 2025-11-27 22:10:10,822 [wrapper] apfmon messages muted
[2025-11-27 17:10:11] 2025-11-27 22:10:10,825 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:10:11] 2025-11-27 22:10:10,828 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:10:11]  *** Error codes and diagnostics ***
[2025-11-27 17:10:11]     "exeErrorCode": 0,
[2025-11-27 17:10:11]     "exeErrorDiag": "",
[2025-11-27 17:10:11]     "pilotErrorCode": 0,
[2025-11-27 17:10:11]     "pilotErrorDiag": "",
[2025-11-27 17:10:11]  *** Listing of results directory ***
[2025-11-27 17:10:11] total 1328964
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 17:10:11] -rwx------ 1 boincer umatlas     36292 Nov 25 22:47 runpilot2-wrapper.sh
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas       100 Nov 26 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:10:11] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 23:01 run_atlas
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas       105 Nov 26 23:01 job.xml
[2025-11-27 17:10:11] -rw-r--r-- 2 boincer umatlas 408573223 Nov 26 23:01 EVNT.47483658._002448.pool.root.1
[2025-11-27 17:10:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 23:01 start_atlas.sh
[2025-11-27 17:10:11] drwxrwx--x 2 boincer umatlas      4096 Nov 26 23:01 shared
[2025-11-27 17:10:11] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 23:01 input.tar.gz
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas         0 Nov 26 23:01 boinc_lockfile
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas      2782 Nov 26 23:01 pandaJob.out
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas        57 Nov 26 23:01 setup.sh.local
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas    991546 Nov 26 23:02 agis_schedconf.cvmfs.json
[2025-11-27 17:10:11] drwx------ 5 boincer umatlas      4096 Nov 26 23:02 pilot3
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas       533 Nov 27 16:58 boinc_task_state.xml
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas      6014 Nov 27 17:04 init_data.xml
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas 925837275 Nov 27 17:08 HITS.47556161._004301.pool.root.1
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas        95 Nov 27 17:09 pilot_heartbeat.json
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas      1065 Nov 27 17:09 memory_monitor_summary.json
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas   1516240 Nov 27 17:09 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas   2251633 Nov 27 17:09 log.47556161._004301.job.log.tgz.1
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas      8646 Nov 27 17:09 heartbeat.json
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 17:10 boinc_mmap_file
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas        29 Nov 27 17:10 wrapper_checkpoint.txt
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas       822 Nov 27 17:10 pilotlog.txt
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas   9015025 Nov 27 17:10 log.47556161._004301.job.log.1
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas       353 Nov 27 17:10 output.list
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas       620 Nov 27 17:10 runtime_log
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas  11284480 Nov 27 17:10 result.tar.gz
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas       666 Nov 27 17:10 x2xNDmrfLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHrMKDmCoEEOn.diag
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 17:10 runtime_log.err
[2025-11-27 17:10:11] -rw-r--r-- 1 boincer umatlas     21782 Nov 27 17:10 stderr.txt
[2025-11-27 17:10:11] HITS file was successfully produced:
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas 925837275 Nov 27 17:08 shared/HITS.pool.root.1
[2025-11-27 17:10:11]  *** Contents of shared directory: ***
[2025-11-27 17:10:11] total 1314764
[2025-11-27 17:10:11] -rw-r--r-- 2 boincer umatlas 408573223 Nov 26 23:01 ATLAS.root_0
[2025-11-27 17:10:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 23:01 start_atlas.sh
[2025-11-27 17:10:11] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 23:01 input.tar.gz
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas 925837275 Nov 27 17:08 HITS.pool.root.1
[2025-11-27 17:10:11] -rw------- 1 boincer umatlas  11284480 Nov 27 17:10 result.tar.gz
17:10:13 (1020412): run_atlas exited; CPU time 484981.193498
17:10:13 (1020412): called boinc_finish(0)

</stderr_txt>
]]>

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